LOC110522983 (LOC106613725)


Basic Information

Item Value
gene id LOC110522983
gene name LOC106613725
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61304113 ~ 61511078 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978016.1
cccctttctcccttcGCTGATTTGAATAGCGGGACTCTGCAGAGAGAATCTGCGCTCTTTTGTTCAGTAGCACTTGGCTGCCAGGGAGGTGAGAATCGTTGTAGCTCTCCTCATCACGTTtcgtctgtctctcttctctttgcGCAATAGGACGGACACCAGATACCCCGTTATTGTGTTTTGGACCTCTCCAAAACGCGATTCGTTCTTTTTTCCAACTCTTTATACGGTTTTGGTGCGCTCGATGGCTCGCACTGCTGACTGTGGCTCGTGACTAACAGAACACCTGCACGGAATCAGACCAACGTTAGACAATCGCTCTACATTCCTGAGGACTTGACAGAGACATCAGAGCGGCTCACGGTCACCTCCTCCTAAAAGgtccagGATGCTGGGTGCGGTGGTCCCTGTCTGTGGACTGCAGGCTCTCCTGACggccctcctgctctctctgggCTATGgcTTGGTGTGGTCAGACCCGGTGGTGAACATGAGGAAGGTGACCCACCAGAGGGTGAGGGAGCAGCTGGCCAACACCGTCCTGCTGCCCTGTGTCTTCACCCTGCGCCCCACCCCTACCCACGAGCCCCCCCGCATCAAGTGGACCAAGGtgtggggacagaggggtgacGATGGTCGGCAGAGGGAACAGTCCATCCTGGTCGCCAAGTACAACGTAGTCAAGGTTAAGAAGGCATTCCAGGGGCGTGTCACCCTGCCCGGTTACCAGGACAACCGTTACAACGCCAGCCTGGCGCTCAGCGGTCTGCGCTCCAGTGACTCGGGCATGTACCGCTGTGAGGTGGTAGTGGGCATCAACGACGAACAGGACACCGTGCCCCTGGAGGTTACAGGTGTGTTGTTCCACTACCGTGCCCCCCACGACCGCTACGCCCTGTCCTTCCCCGACGCCCAGCGGGTGTGTCTGGAGAACTCGGCTGTCATCGCCACGCCTGCTCAGCTCCAGGCCACCTTTGCCGACGGGTATGACAACTGTGATGCCGGCTGGCTCTCTGACCAGAGCGTGAGgTACCCTATCCAGTCTCCCAGGCCTGGTTGCTATGGCGACAGGCAGGACTCACCTGGAGTGCGCAACTACGGCAATCGGGCCCCTGACGAGCTGTTTGATGTCTACTGCTTTTCCAAGCAACTGCAAGGTGAGGTGTTCCACTTGTCTGTACCAGAGAAGCTGAGCCTGGCCACAGCCTCTACCCACTGCCACGCTCTAAATGCTCAGCTGGCCACGGCAGGGCAGCTCTACCTAGCTTGGCAGGCCGGCCTGGACCAGTGTGACCCAGGTTGGCTGGCTGACGGCAGCGTGCGCTACCCTATAAACCTTCCCCGGCGCAACTGTGGCGGGGATGATCCGGGGGTGCGCACTGTCTACCACAACCCCAACCGCACCGGTTTCCCAGTAACCACCACCCGCTTCGACGCCTACTGCTACCGAGAACGTGATGCAGGAGTCCAGGCAGCTCAGCCAGGGTTCCTCCAATACAGAGAGCCAGAGAACAACTCATCAGACACTGAGCCCCAGCGCTCTGACCCCTTCCCCAAACCCTCCACCTGGACTGGCATCGTGGACCTGGACAAGGAGGGAATCAGCTCCATCGCTAGAGGCAACGAGTCCTCTGAGATCTCAGAGGAGCACGTGGTAATCCACCTCCAGCCAGGGGAGGGTACCCAGCGCTGGGGAGAGGAGAACCAGGAGACCCAGGACCGATCCAAAACTGGAGCCCCTCAGGACGCCTCCTCCAGCCCTAAGACCAAGACCAGTACCCTGAGTCTGTCTGCCCTGGAGAGTCTGGAGACCCACGGAGGTTCTGcccaggaggaggtggagggtgaggGGGAAGTGGAGGGGCGTTTCGGGTCGTCCGACTCCCCTCTTTCCTCCCAGACCTCTCCAACGCTCCAGGCTCAGACTGCCAATAGCGTTCTCCACAGCTTCGTCAACAACCTGATGAATCCCTTCAAGTATTGGACAGGCTCTGTGGAGACCGACACAGAGGCCCCTCCCCCAGCCACACCTGCCTCACTGCCCGAGGGGACATTATCTGTGGCAGACCAGGAACCCCCAGGGTCGGCTAAGGTCAACCCCACCGAAGGGAGGCCCAATCTTGGCAGCAAAGGAAGCACTGACAGCGGCGTCATGGAGCATCGGAGTGGAGGCTCCTCGCTCAAGACATCCACCGGTGGGCTCACCAGCTCAGAGGAGGGTCTAACTGAGCAGGAGAAAGAGGTGGTCCCATTTGGCCCTGTGATCCTGTACACACAGCCAGGGAGGGATCCAAGCACATCCCTAACCAACCCTTCAGCCTCCTCATCTAATGGATTCACAGAACTGGGGCCCGGTGGTAGTAGCAAGACTGTGGAGGCTTTGAATGTATCAGGAGGCCCCCACCATGGCACCAGGTATGAGCTGGCTTCATCCCCAGGGGCCCCGGCACAAGCCACAGGCAGCCAGCTGAGATGGGCCCTCAAGGCCATGAAGGGTTCTAAGCTTGTGCCGGAGGGACACATGGCGTACGTGGGGAAGGATTCCACCTGGGAGCCAATGGAGGCCAAAGCAGGGCCCCTGGAGGTCATGACCCTGCCAACCAGCCCAGAGAACTACTCTGGCGAGGGGAGGGACCAGGATGAGGACCACAGCATCCCCCATGACGTcctagaaagagaggagggggataaagagacagagacggagggaAGCGGGAGAGGAGTGAACGACTTACCAAGAGGCTTTGGATCTAACGGTAACAGCAATCCAGCCAGCGGTGCCAGCAGCAGCACAAAGCCTCCTGTGTCTGGACTGAAACCCACCCAGACCCAAACCCAGAGCCAGACAGTAGCAGAACACACCACTATCTCCCAGTGGCAGCTGGTGGACCAGCCCACCACCTCACCTGcagctgctgcttctgctgcaGGCTCCAGCCAGGGCCCAGGGGGAACCGTTGAGGAGGCCAGGGGAGAGATTGTCTATGTCCGACGCCCCACTGAGAAACTGCTTCCAGCCACCTCCAGTAAGAAagatggcttctcccctgtgatCAGGAAGCAGAACCTGAACACAACCAGAGTGACTGAGAGACAACGCAGCCTAGATGAGGCCACCACACCTGGGGTTACCTCCAGACCTGCAGCCCCTATGGAGCCCCTGACCACCATCAAAACCTCCACAGCAGACACCCAGAGAACAGATTCCACCAGGGAGCCTCCTATCTCCATCATATGGGTtccggtggagagagagaagacaatcAGTACCACACCTCTGACCAGAGATGGACCACAAACGGCCACAGCTTCCACTCAGTTGACCACGCCATTGTCCATTCTGAAGAGCAGCGATCGTGAGGCCGAGTCCAGGTTGGCCGTTTCAGAGTCATTCGTGGTTGGAAAAGGGTGGAAGCCTTTGGGAGGGAGGAACCCCAAATCTAAGGAGGACAAAACCCTTGTGAtcacagagaagacagagaagaacccttttggtgtCATTGTGCCCACCTGGGGCTATGACCTCAACCCTTCAGCTGAAGACAACCCGTGCCAGACCAACCCCTGTCTGCATGGAGGCAGCTGCCTGCCGGAGGGCGACGGCTACAGCTGCTACTGCCCCCAGGGCTACTCTGGAGAGAGCTGTGAGATCGACATCGACGACTGCCAGTCCAACCCGTGTCAGAACGGAGGCACCTGCATCGATGAGATCAACTCCTTCGTGTGCCTGTGTCTGCCCAGCTACGGTGGAGCCACGTGTGAGAAAGACACAGAGGGCTGTGAACACACATGGAGGAAGTTCCATGGCCACTGCTACAGGTACTTCAGCCGCAGACACACCTGGGAGGATGCAGAGAAGGACTGCAGGGAGCACAGCGGACACCTGGCCAGCATACACACACTCCAGGAGCAGGACTTCATCAACGGTCTGAGTCATGACAACACCTGGATTGGACTGAacgacagaacagtggaagaggaTTTCCAGTGGACTGACAACATGGAcctgCAATATGAGAACTGGCGGGAGAACCAGCCGGACAACTTCTTTGCGGGTGGAGAGGACTGTGTGGTGATGATCGCCCACGAGAACGGCAAGTGGAACGACGTGCCCTGCAACTACAACCTGCCCTACGTCTGCAAGAAGGGAAcagTGCTGTGTGTCAACCCTCCCACCGTGAAGAACGCCTTTCTGATTGGTCGTAAGCGGTCCCACTATGACATCCACTCAGTGGTGCGTTACCAGTGTGCCGACGGGTTTCTCCAACGCCACGTCCCCACGGCCAAGTGTCGTGCCAACGGCAAATGGGAGCGGCCGAAAATCATCTGCACTATGACCCGGGGAGCACAGCGCTACAGGCGGCACCATGACCATCACAACGGCCGACGGGAGCGCAGAAAGCACAAGAAGCACGGCCATGGACACGGAGAGGGGGGGCACCATGGAGGGGATCAGGGCCACAGGCATGGGCACGGGCAGGGGAACGCTCATGCCCACATCTGAACCAAAAACGTCCACTGCCCGAACCTCGCCTCGCTGCCCagtctccctcctctacccctctctaccccctctcctgcCCTGTTCCTGACCCCACAACCTGGCTCCTAGAGCCAGCCTGTATCATACTCAACTCTGAGGCCTGACAGCCGACTGCTAGGCATCACTGAGACAATAACAATCTCTTTGTACTCTTCTTTAATTTCACTGCTTTTCTTTtctgcctccctcccccctccctccctctccctcccccctccctccctccccctccctccctctacctcccccctccctccccccctctctccctcccccccccccccccccctccctccctccctccctacttttATCAAGTCAACGAGGACCCAGGATATGGGGCTTTGCTCACCTGTTCAAATCTTAAGAGGTTTCTTTTGTGTCCTTCTATTTTTACATTATCGTGGAGGTTTAGTACAAACTGTAAATAGTGACAACATCAGAAAATCCTGTATCGAACCAGAAGAGTCGGGGAATACATTAACATGCAATCCATGTTTTTCAATTGTTCATTCGAACCTTGTTTTTAACAGATGTCTGACTGTATTTCTTGACTTTGCTGTTTTTGGTTAGCTCTCTGGAAGACCTTTTGCTCAATGACCTACAACAGTTATTCTGAACAGATTTAGCTACGTGCTTTCTTTGACACGGGCAGTTCTACTGGTTTTGATCGACTAGCATTGTATCTCATCATTGTTACGACGGTCACTTTTAACTGGGTATAGAGGAAAACCGAGAAAGCGCAGTTAGCCTCTATCCAAATCGACCTCACGCCACTGAGGTCGATCCAGAAGCTCAAATCTCTCCCCGTAGTGGCAGTCCATGTTTCTTCTAACAATCATCATCCTACTGTTTCCTTTCTAAGTCATTCTGTGTTCCTGCTTCACTACTAGAGGAGATAGCTAGTAAGGAGTCGAGAAACCCAACCCAGAATAGGCCAGATTATGACTAGCCTCTCTAAGTCTGGTTTCCCAGCTAGCTATTAGGCAATGATCCTTCATCAGAATTCTCTCATACCCATCACCACGCTCTCATATTCCGTCTGTGTCCCGGTGTCAATGGTCTGTTCGTCTTCCATTTTGGAGTTCTACTACTCTGGCCTGCTGAGGAGAAATTGTTCTGTCagactgtcagagagagaaaaggagagggggaggaatagagagagaagagcggggaATTCGGACTCTTAATTGCAGTCGCCCCGTTCTCCAGCACATCAAACAGAGAGATGACAGGGCTCTCTCTGCAGCCGGCGGGTACAGAGCTGGGCCCATAATTATCTTTTTAAAGTAGTGCAGATGGGGGCATAATGCCGGGATGAA

Function

NR:

description
PREDICTED: neurocan core protein-like

GO: NA

KEGG:

id description
K06794 NCAN, CSPG3; neurocan core protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978016.1 True 5868 mRNA 0.56 16 61304113 61511078

Neighbor

gene id symbol gene type direction distance location
trnaa-agc-3 NA coding downstream 37344 61266697 ~ 61266769 (-)
LOC110524243 LOC106613723 coding downstream 62107 61139319 ~ 61242006 (-)
tjp3 LOC106613722 coding downstream 172232 61104757 ~ 61131881 (-)
arhgap45b LOC106613721 coding downstream 207727 61082638 ~ 61096386 (-)
LOC110524239 LOC106573579 coding downstream 222249 61058949 ~ 61081864 (-)
LOC110524247 LOC106613727 coding upstream 106909 61617987 ~ 61622355 (-)
LOC110524249 LOC106613730 coding upstream 149071 61660149 ~ 61679106 (-)
LOC110524252 LOC106613733 coding upstream 252040 61763118 ~ 61786542 (-)
tssk6 LOC106613736 coding upstream 330483 61841561 ~ 61842727 (-)
si:ch211-212d10.2 LOC106613739 coding upstream 523011 62033465 ~ 62037994 (-)
G423534 hapln4 non-coding downstream 18449 61283563 ~ 61285664 (-)
G423510 NA non-coding downstream 38065 61265810 ~ 61266048 (-)
G423509 tm6s1 non-coding downstream 38773 61263891 ~ 61265340 (-)
G423497 NA non-coding downstream 55226 61248568 ~ 61248887 (-)
G423495 NA non-coding downstream 57322 61246558 ~ 61246791 (-)
G423794 NA non-coding upstream 17453 61528531 ~ 61528739 (-)
G424412 NA non-coding upstream 21752 61532830 ~ 61595934 (-)
G424462 NA non-coding upstream 89676 61600754 ~ 61601112 (-)
G424463 NA non-coding upstream 90194 61601272 ~ 61601693 (-)
G424464 NA non-coding upstream 90804 61601882 ~ 61602274 (-)
G422347 NA other downstream 1203057 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 2165856 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 2267814 59026103 ~ 59036299 (-)
G420421 NA other downstream 2889970 58413128 ~ 58414143 (-)
G424474 NA other upstream 105792 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 138889 61649967 ~ 61651775 (-)
G424502 NA other upstream 147955 61659033 ~ 61659585 (-)
G424649 NA other upstream 377120 61888198 ~ 61927422 (-)
G424678 NA other upstream 487448 61998526 ~ 62001309 (-)

Expression


Co-expression Network