LOC110524247 (LOC106613727)



Basic Information


Item Value
gene id LOC110524247
gene name LOC106613727
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61617987 ~ 61622355 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021603720.2
GCAAATAACACGCACATTCTTTCAATCCCAGGTTTCTTACTTTTTCCTATTCACAATTGTTTCAACTCTTTACAGATACAGTATATGGCAGATTGAAGAGGTTGCGAAAGATAACGCGTGTACGAGGATAAAGGAGATTCCGACCGGGATAACTTTTTCCAAAGATAGGGGCGCCCATGTCAGTCTGTGATTTATAGCCCAAATATGAGGTACATTTATAGCCAGCGGTCTTTGATGGTCCTGTCTTCATTAGGGATCCTATCTGGGATTATGTCTCTGCTATCGGTCATTTTGATTTTCCAGATACAATCACAACAGATTGCTGTGAAGGAATCACCCCCCAACATCTCCATCGTGCCAACTAATGTTTGGGCAGTGCTTATGCCTGTGTCTATagtgctctctgctctctccctcacgctcAATTTGAGCTCTGTCATGGTCTGCCTTCTGCACAGCTACTTTACAACCGAGATATGCAGAGGAGAAGATACAGAAAGAGCAGACTGGTTCCTATTCCATAGCCAAACTGTCCGACATGTGGCCATTGGATTATTTTGCCTTGGGGTTTCAGTATATTTAGCAGCTATGTCCATCTACATGCTGCTGGTGTTTGAGGTAGAGACCGGCATAGCCAGCGCATGCGTACTGGCCTCAGGAATCCTGATTCTGCTGGTGATCGTGATTCACTCACTGGTCAAAGCCGCCCGCACCGCCCAACACTACCATGGTGGGGAGCACACTGACACTGTGTACCAGAACCAGCATGGAGAGTGCACCCCTGCCGTCCACCACGGCGAGCTCCAAGACAGGGACAAACCCAGGAGGCATCGCAACAACTCCCATCTCCACCGGCAGTTGTCCTACCCTCCCTGTACTGACCAAAAGCAGCATCACCAGCATCACTCCCCATCCCACGGCCCACAGAGTCACGGCAGTGACAAGGAGGGCTACAGTAGTGGTGGCAGTGGGGGTGGCTCGAGAATGCACAGGACCCTGTCGACAGAGTCAGGGCCGCTGCAGTCTCCGTCTAAGCCATGGAATGGCATTAACAATGAGATGAGAAGCGTGCTGGCCCGCAAGTCAGGGGCCTCCAGTAAAGACTCTACTCTAGTGTAAGATGCACTGCACAAGTCATCGCAGTTAGCACAAGACTAGTTCATTCCGCCCATACGATCTACCGTTCTGAAGAATATGGATAGAAAATagctgaagctatataaaagctcTGAGCTATCCCACATTTCAATACAGTGGCATTGTCATTTTAATACACCTATCTTAACATCCCTATTGACTTTTTACACACTAACCATGTTTGATTCCATCACTTTTAAGCCCTCTGTAGAATGTTTACTTACTGGTATTCCACTGGAAAATGTTAGTGACTAACTAGCTACAGCTAATGCTTTTGTTGCGACGTGATTATAAGATTTAAAGATTTGCTAATAAATGCTTCCATTTTCAAGTGTTTGGTAAAGACCAAGAACGATCCATGAAATATATTGCCAAAACTGTGTATTACACAATGTATAGAGAAATTCTGTAGTTTCTAGTCTGCATACTgtaaacaaaacatttttaatAACTGTGAATAAACTCATTTTGTAAAACAATTTCAAACCATGAGTATGTTGTTACAAAACACCCTGTCCTAAAAGATCAAGTGGAACA
>TU480895
GCCCACAGAGTCACGGCAGTGACAAGGAGGGCTACAGTAGTGGTGGCAGTGGGGGTGGCTCGAGAATGCACAGGACCCTGTCGACAGAGTCAGGGCCGCTGCAGTCTCCGTCTAAGCCATGGAATGGCATTAACAATGAGATGAGAAGCGTGCTGGCCCGCAAGTCAGGGGCCTCCAGTAAAGACTCTACTCTAGTGTAAGATGCACTGCACAAGTCATCGCAGTTAGCACAAGACTAGTTCATTCCGCCCATACGATCTACCGTTCTGAAGAATATGGATAGAAAATagctgaagctatataaaagctcTGAGCTATCCCACATTTCAATACAGTGGCATTGTCATTTTAATACACCTATCTTAACATCCCTATTGACTTTTTACACACTAACCATGTTTGATTCCATCACTTTTAAGCCCTCTGTAGAATGTTTACTTACTGGTATTCCACTGGAAAATGTTAGTGACTAACTAGCTACAGCTAATGCTTTTGTTGCGACGTGATTATAAGATTTAAAGATTTGCTAATAAATGCTTCCATTTTCAAGTGTTTGGTAAAGACCAAGAACGATCCATGAAATATATTGCCAAAACTGTGTATTACACAATGTATAGAGAAATTCTGTAGTTTCTAGTCTGCATACTgtaaacaaaacatttttaatAACTGTGAATAAACTCATTTTG

Function


NR:

description
PREDICTED: transmembrane protein 221-like isoform X2

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021603720.2 False 1674 mRNA 0.45 3 61617987 61622355
TU480895 True 689 lncRNA 0.41 1 61618053 61618741
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Neighbor


gene id symbol gene type direction distance location
LOC110522983 LOC106613725 coding downstream 106909 61304113 ~ 61511078 (-)
trnaa-agc-3 NA coding downstream 351218 61266697 ~ 61266769 (-)
LOC110524243 LOC106613723 coding downstream 375981 61139319 ~ 61242006 (-)
tjp3 LOC106613722 coding downstream 486106 61104757 ~ 61131881 (-)
arhgap45b LOC106613721 coding downstream 521601 61082638 ~ 61096386 (-)
LOC110524249 LOC106613730 coding upstream 37794 61660149 ~ 61679106 (-)
LOC110524252 LOC106613733 coding upstream 140763 61763118 ~ 61786542 (-)
tssk6 LOC106613736 coding upstream 219206 61841561 ~ 61842727 (-)
si:ch211-212d10.2 LOC106613739 coding upstream 411734 62033465 ~ 62037994 (-)
LOC110524260 LOC105011525 coding upstream 454214 62076569 ~ 62083302 (-)
G424471 NA non-coding downstream 6417 61611298 ~ 61611570 (-)
G424467 NA non-coding downstream 10524 61603707 ~ 61607463 (-)
G424464 NA non-coding downstream 15713 61601882 ~ 61602274 (-)
G424463 NA non-coding downstream 16294 61601272 ~ 61601693 (-)
G424462 NA non-coding downstream 16875 61600754 ~ 61601112 (-)
G424483 NA non-coding upstream 5921 61628276 ~ 61628498 (-)
G424487 NA non-coding upstream 14758 61637113 ~ 61637366 (-)
G424497 NA non-coding upstream 27093 61649448 ~ 61649651 (-)
G424500 NA non-coding upstream 29667 61652022 ~ 61652284 (-)
G424501 LOC106613729 non-coding upstream 30577 61652932 ~ 61656404 (-)
G424474 NA other downstream 743 61616870 ~ 61617244 (-)
LOC110524239 LOC106573579 other downstream 546844 61058949 ~ 61081864 (-)
G422347 NA other downstream 1516931 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 2479730 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 2581688 59026103 ~ 59036299 (-)
G424499 LOC106613729 other upstream 27612 61649967 ~ 61651775 (-)
G424502 NA other upstream 36678 61659033 ~ 61659585 (-)
G424649 NA other upstream 265843 61888198 ~ 61927422 (-)
G424678 NA other upstream 376171 61998526 ~ 62001309 (-)
LOC110524277 LOC106613757 other upstream 1181583 62803832 ~ 62808176 (-)

Expression


LOC110524247(LOC106613727) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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LOC110524247(LOC106613727) Expression in each Bioproject

Bar chart with 17 bars.
LOC110524247(LOC106613727) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network