LOC110524248 (LOC106613729)


Basic Information

Item Value
gene id LOC110524248
gene name LOC106613729
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61637104 ~ 61655195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603721.2
AGCTGTTGCTGCTGGAAATGTACGCGCGGTTGAAAGGAGCGCTCCTGAATCATTATCATCTAGAATCAGGTGGACATTTCTAGCCACGGCACCAAGTATTCATTTCAACGACAACGAATAGTTCTTGAATTTTTTTAAGACATTCCAAAAAATTTTAAAATAGACACTGCTGTCATATTTATCCGTCAATACCGGCTCAAACACAGAGTAACCTACAGTTAAGAACTGGGCAGAACGTGACACCGGAGAGATATCAAAGAACAGtGTTAAGCCATCTGTCAGACACGCAGACCGTAAACACAATGGGAAGGAAGAAGATACAAATCTCTCGTATCCTAGACCAGCGGAATCGACAGGTGACATTCACCAAGCGTAAGTTTGGCCTGATGAAGAAAGCGTATGAGCTGAGTgtactgtgtgactgtgagatCGCCCTCATCATCTTCAACAGCACCAACCGTCTGTTCCAGTACGCCAGCACTGACATGGACAAGGTCCTGCTCAAGTACACAGAGTACAGCGAGCCTCACGAGAGCAGGACCAACACAGACATACTGGAGACTCTGCGGAGGAAGGGCCTGGGCCTGGACGGGACAGAGCTGCTGGACACGGAGGAACCCATGCAGGTGGCAGCAGAGAAGTATGGCCCACACAGCGAGGGCATGGACCTCTCCCTGGCCCGCCAGCGCTACTACGTTAGTACTCACACGGGTCTTATCAGACAGGCCCCCTCCTTGCACTCACCAGAGGCCCAGTTCCTGGTGTCTACTGGCTGTGAGAATGGATACCCCAACTCCTCCAACCCCAGCCCGAGCTCCCACAGACCCCCGGCCTTCAAGCCCCTGGGCCCCAGACCAGGCTCAGCCAGCCCTGCAGGGCCCCACTGCCATGCTGCCTTCATGTCCCCACACTCAGGTATTGGCAACTCTATGTTCTCCCACGGCAACCTGAGCCGGGCCTTGGAGATGAAGACTCCTCCCCCTTTGAATCTGGGCAGTGAGAACCGGCGGACAGAGAGCCACCCAGGCATGGGTGGCACACGCGCCAACTTTAGCAGTTCTAGAGGCCTACTGTACCCGGGCATGCACCCAGGGAACCACATGCTGGCAATGGGGAAGACAGGTCTGCTGACTCATGGTCTGGGGGGCTACAGCCTCTCCTCTGCTGGACCATCTGaCTACAGTCACCCAGGTTTCTCCCATGCTGTGAGTCTACAGCGTGGGACTGTGAACCCATGGCAGACAGCACAACCACAGGAGCAGCATGTACCTCACCTCAGCCCAGCGATGTCCAGTGGAGGGTGCTCTTTTCCTTCTCAGTCCTcaacccccacccctcctcctcacccctccctcaaCCTCAGCATCAAATCGGAGCGCTGCTCCCCGGAGCACATCTGCTCCCCGACCTCTCCGCCCGTGCGCCACTTGAGGCAGCACTCTCCAATGAGCACCTCCAATTCCGCTCATCACACCCCCCAGGAGCCCTACCCAGCCAATGAGAGAGAGGATTTCCCCAAAGGAGGTGTTCCCTACCCGGCTCAGCACGgggcagaggagaaaggagggctGCCCCTGAGGCAATTAGAAATCAGCGATGGGTGGCAGAGATAGCTGGCAGCGACTACCACACACAAAAATCCTGCCACATGGTttccaacacacagagagaggtgatGGGTTCACTCGTTCACATCATCCCAGAGGAAAGAAAGACCCCCCTTAGAGCTGGGCTGGACTCTCCATTGTAGGCAATGAACATGTGGCACTGCCTCTCTGATTTTGATACAGTGAGGAGATACCGTGGGTGTGTTGTTGTTGGGTTTGGTTGGTTTGTCTGCGTGTTGGTTCAAAGGGGTGTCAAACCACACATCAATGTGGTTCTCTCCTCCTGCTTGGGCTAcagcacagagcagagcaggggtgAGAGCATCAGTCATTTAGCCATGTAACTTAGAGCACAGTGTTTCAGATTAATGCTTCACATTCAGGTCCCCATTTAATGTACATATATATAACTTTAATGCTTAGTTTATCCTTCAGCCCAAAATCAATGAAGTGGTCAGCTCACAGGAGACCGATTAGGGAGCAGCAAGGTTCTATTCATCTATCATGGTCTCAATGGGCATGGCCTCGTGATAGTGAGTGGGAAGTTGGGCTGGATAGGAATTGATCACagaaaaacaaaaatgtaatctCCACTTATGGATTTTTGTATTGAAAATCTGTGCATTTTTAAGTCTCTCAGGGATTTTGATCATTGGTTCCATTACAAAGGTTTAGTGTTGCTTTTAATAATACTGAGCAAAGCTGTTTGTTTTTACACTATATCCTGCatagtttaattatttatttttggacACTGGCCTTAATTATGAAAAATTATGACATCAATTTAAGATCAAAGGTCCATATTCAGTATAACCATTTTATAAAGTTGagctttttttttgtttaaataaattaaaaagctCAGGGCTGGACTACCGCATTTGGGGTCACTGGGGAACCGACCTCCAGTTACCCTGCTTTTCAACATATTTTGTATtggaaaaatgtgcagttttatatcaaatcaaatcaaatggtgtagtagaccttacagtgaaatgcttacttacaagcccttaaccaacaatgcagttttaagtaagagataaaaaaaaaagtaagagacaagaataacaaatgattaaagagcagcagtaaataacaatagtggagctacatacaggggtACCGGTTACCCCGGTGTCGATGTAATATAGTTAccccggtgtcgaggtaatatggTTAccccggtgtcgaggtaatataGTTAccccggtgtcgaggtaatagaGGTAGTATAGTTACCCCGGTGTTGAGGTAATATAGTTAccccggtgtcgaggtaatataGTTAccccggtgtcgaggtaatatggTTAccccggtgtcgaggtaatataGTTAccccggtgtcgaggtaatatggTTAccccggtg
>XM_021603722.2
AGCTGTTGCTGCTGGAAATGTACGCGCGGTTGAAAGGAGCGCTCCTGAATCATTATCATCTAGAATCAGGTGGACATTTCTAGCCACGGCACCAAGTATTCATTTCAACGACAACGAATAGTTCTTGAATTTTTTTAAGACATTCCAAAAAATTTTAAAATAGACACTGCTGTCATATTTATCCGTCAATACCGGCTCAAACACAGAGTAACCTACAGTTAAGAACTGGGCAGAACGTGACACCGGAGAGATATCAAAGAACAGtGTTAAGCCATCTGTCAGACACGCAGACCGTAAACACAATGGGAAGGAAGAAGATACAAATCTCTCGTATCCTAGACCAGCGGAATCGACAGGTGACATTCACCAAGCGTAAGTTTGGCCTGATGAAGAAAGCGTATGAGCTGAGTgtactgtgtgactgtgagatCGCCCTCATCATCTTCAACAGCACCAACCGTCTGTTCCAGTACGCCAGCACTGACATGGACAAGGTCCTGCTCAAGTACACAGAGTACAGCGAGCCTCACGAGAGCAGGACCAACACAGACATACTGGAGACTCTGCGGAGGAAGGGCCTGGGCCTGGACGGGACAGAGCTGCTGGACACGGAGGAACCCATGCAGGTGGCAGCAGAGAAGTATGGCCCACACAGCGAGGGCATGGACCTCTCCCTGGCCCGCCAGCGCTACTACGCCCCCTCCTTGCACTCACCAGAGGCCCAGTTCCTGGTGTCTACTGGCTGTGAGAATGGATACCCCAACTCCTCCAACCCCAGCCCGAGCTCCCACAGACCCCCGGCCTTCAAGCCCCTGGGCCCCAGACCAGGCTCAGCCAGCCCTGCAGGGCCCCACTGCCATGCTGCCTTCATGTCCCCACACTCAGGTATTGGCAACTCTATGTTCTCCCACGGCAACCTGAGCCGGGCCTTGGAGATGAAGACTCCTCCCCCTTTGAATCTGGGCAGTGAGAACCGGCGGACAGAGAGCCACCCAGGCATGGGTGGCACACGCGCCAACTTTAGCAGTTCTAGAGGCCTACTGTACCCGGGCATGCACCCAGGGAACCACATGCTGGCAATGGGGAAGACAGGTCTGCTGACTCATGGTCTGGGGGGCTACAGCCTCTCCTCTGCTGGACCATCTGaCTACAGTCACCCAGGTTTCTCCCATGCTGTGAGTCTACAGCGTGGGACTGTGAACCCATGGCAGACAGCACAACCACAGGAGCAGCATGTACCTCACCTCAGCCCAGCGATGTCCAGTGGAGGGTGCTCTTTTCCTTCTCAGTCCTcaacccccacccctcctcctcacccctccctcaaCCTCAGCATCAAATCGGAGCGCTGCTCCCCGGAGCACATCTGCTCCCCGACCTCTCCGCCCGTGCGCCACTTGAGGCAGCACTCTCCAATGAGCACCTCCAATTCCGCTCATCACACCCCCCAGGAGCCCTACCCAGCCAATGAGAGAGAGGATTTCCCCAAAGGAGGTGTTCCCTACCCGGCTCAGCACGgggcagaggagaaaggagggctGCCCCTGAGGCAATTAGAAATCAGCGATGGGTGGCAGAGATAGCTGGCAGCGACTACCACACACAAAAATCCTGCCACATGGTttccaacacacagagagaggtgatGGGTTCACTCGTTCACATCATCCCAGAGGAAAGAAAGACCCCCCTTAGAGCTGGGCTGGACTCTCCATTGTAGGCAATGAACATGTGGCACTGCCTCTCTGATTTTGATACAGTGAGGAGATACCGTGGGTGTGTTGTTGTTGGGTTTGGTTGGTTTGTCTGCGTGTTGGTTCAAAGGGGTGTCAAACCACACATCAATGTGGTTCTCTCCTCCTGCTTGGGCTAcagcacagagcagagcaggggtgAGAGCATCAGTCATTTAGCCATGTAACTTAGAGCACAGTGTTTCAGATTAATGCTTCACATTCAGGTCCCCATTTAATGTACATATATATAACTTTAATGCTTAGTTTATCCTTCAGCCCAAAATCAATGAAGTGGTCAGCTCACAGGAGACCGATTAGGGAGCAGCAAGGTTCTATTCATCTATCATGGTCTCAATGGGCATGGCCTCGTGATAGTGAGTGGGAAGTTGGGCTGGATAGGAATTGATCACagaaaaacaaaaatgtaatctCCACTTATGGATTTTTGTATTGAAAATCTGTGCATTTTTAAGTCTCTCAGGGATTTTGATCATTGGTTCCATTACAAAGGTTTAGTGTTGCTTTTAATAATACTGAGCAAAGCTGTTTGTTTTTACACTATATCCTGCatagtttaattatttatttttggacACTGGCCTTAATTATGAAAAATTATGACATCAATTTAAGATCAAAGGTCCATATTCAGTATAACCATTTTATAAAGTTGagctttttttttgtttaaataaattaaaaagctCAGGGCTGGACTACCGCATTTGGGGTCACTGGGGAACCGACCTCCAGTTACCCTGCTTTTCAACATATTTTGTATtggaaaaatgtgcagttttatatcaaatcaaatcaaatggtgtagtagaccttacagtgaaatgcttacttacaagcccttaaccaacaatgcagttttaagtaagagataaaaaaaaaagtaagagacaagaataacaaatgattaaagagcagcagtaaataacaatagtggagctacatacaggggtACCGGTTACCCCGGTGTCGATGTAATATAGTTAccccggtgtcgaggtaatatggTTAccccggtgtcgaggtaatataGTTAccccggtgtcgaggtaatagaGGTAGTATAGTTACCCCGGTGTTGAGGTAATATAGTTAccccggtgtcgaggtaatataGTTAccccggtgtcgaggtaatatggTTAccccggtgtcgaggtaatataGTTAccccggtgtcgaggtaatatggTTAccccggtg
>XR_005051827.1
AGCTGTTGCTGCTGGAAATGTACGCGCGGTTGAAAGGAGCGCTCCTGAATCATTATCATCTAGAATCAGGTGGACATTTCTAGCCACGGCACCAAGTATTCATTTCAACGACAACGAATAGTTCTTGAATTTTTTTAAGACATTCCAAAAAATTTTAAAATAGACACTGCTGTCATATTTATCCGTCAATACCGGCTCAAACACAGAGTAACCTACAGTTAAGAACTGGGCAGAACGTGACACCGGAGAGATATCAAAGAACAGtGTTAAGCCATCTGTCAGACACGCAGACCGTAAACACAATGGGAAGGAAGAAGATACAAATCTCTCGTATCCTAGACCAGCGGAATCGACAGGTGACATTCACCAAGCGTAAGTTTGGCCTGATGAAGAAAGCGTATGAGCTGAGTgtactgtgtgactgtgagatCGCCCTCATCATCTTCAACAGCACCAACCGTCTGTTCCAGTACGCCAGCACTGACATGGACAAGGTCCTGCTCAAGTACACAGAGTACAGCGAGCCTCACGAGAGCAGGACCAACACAGACATACTGGAGACTCTGCGGAGGAAGGGCCTGGGCCTGGACGGGACAGAGCTGCTGGACACGGAGGAACCCATGCAGGTGGCAGCAGAGAAGTATGGCCCACACAGCGAGGGCATGGACCTCTCCCTGGCCCGCCAGCGCTACTACGTTAGTACTCACACGGGTCTTATCAGACAGGCCCCCTCCTTGCACTCACCAGAGGCCCAGTTCCTGGTGTCTACTGGCTGTGAGAATGGATACCCCAACTCCTCCAACCCCAGCCCGAGCTCCCACAGACCCCCGGCCTTCAAGCCCCTGGGCCCCAGACCAGGCTCAGCCAGCCCTGCAGGGCCCCACTGCCATGCTGCCTTCATGTCCCCACACTCAGGTATTGGCAACTCTATGTTCTCCCACGGCAACCTGAGCCGGGCCTTGGAGATGAAGACTCCTCCCCCTTTGAATCTGGGCAGTGAGAACCGGCGGACAGAGAGCCACCCAGGCATGGGTGGCACACGCGCCAACTTTAGCAGTTCTAGAGGCCTACTGTACCCGGGCATGCACCCAGGGAACCACATGCTGGCAATGGGGAAGACAGGTCTGCTGACTCATGGTCTGGGGGGCTACAGCCTCTCCTCTGCTGGACCATCTGaCTACAGTCACCCAGGTTTCTCCCATGCTGTGAGTCTACAGCGTGGGACTGTGAACCCATGGCAGACAGCACAACCACAGGAGCAGCATGTACCTCACCTCAGCCCAGCGATGTCCAGTGGAGGGTGCTCTTTTCCTTCTCAGTCCTcaacccccacccctcctcctcacccctccctcaaCCTCAGCATCAAATCGGAGCGCTGCTCCCCGGAGCACATCTGCTCCCCGACCTCTCCGCCCGTGCGCCACTTGAGGCAGCACTCTCCAATGAGCACCTCCAATTCCGCTCATCACACCCCCCAGGAGCCCTACCCAGCCAATGAGAGAGAGGATTTCCCCAAAGGAGGTGTTCCCTACCCGGCTCAGCACGgggcagaggagaaaggagggctGCCCCTGAGGCAATTAGAAATCAGCGATGGGTGGCAGAGATAGCTGGCAGCGACTACCACACACAAAAATCCTGCCACATGGTttccaacacacagagagaggtgatGGGTTCACTCGTTCACATCATCCCAGAGGAAAGAAAGACCCCCCTTAGAGCTGGGCTGGACTCTCCATTGTAGGCAATGAACATGTGGCACTGCCTCTCTGATTTTGATACAGTGAGGAGATACCGTGGGTGTGTTGTTGTTGGGTTTGGTTGGTTTGTCTGCGTGTTGGTTCAAAGGGGTGTCAAACCACACATCAATGTGGTTCTCTCCTCCTGCTTGGGCTAcagcacagagcagagcaggggtgAGAGCATCAGTCATTTAGCCATGTAACTTAGAGCACAGTGTTTCAGATTAATGCTTCACATTCAGGTCCCCATTTAATGTACATATATATAACTTTAATGCTTAGTTTATCCTTCAGCCCAAAATCAATGAAGTGGTCAGCTCACAGGAGACCGATTAGGGAGCAGCAAGGTTCTATTCATCTATCATGGTCTCAATGGGCATGGCCTCGTGATAGTGAGTGGGAAGTTGGGCTGGATAGGAATTGATCACagaaaaacaaaaatgtaatctCCACTTATGGATTTTTGTATTGAAAATCTGTGCATTTTTAAGTCTCTCAGGGATTTTGATCATTGGTTCCATTACAAAGGTTTAGTGTTGCTTTTAATAATACTGAGCAAAGCTGTTTGTTTTTACACTATATCCTGCatagtttaattatttatttttggacACTGGCCTTAATTATGAAAAATTATGACATCAATTTAAGATCAAAGGTCCATATTCAGTATAACCATTTTATAAAGTTGagctttttttttgtttaaataaattaaaaagctCAGGGCTGGACTACCGCATTTGGGGTCACTGGGGAACCGACCTCCAGTTACCCTGCTTTTCAACATATTTTGTATtggaaaaatgtgcagttttatatcaaatcaaatcaaatggtgtagtagaccttacagtgaaatgcttacttacaagcccttaaccaacaatgcagttttaagtaagagataaaaaaaaaagtaagagacaagaataacaaatgattaaagagcagcagtaaataacaatagtggagctacatacaggggtACCGGTTACCCCGGTGTCGATGTAATATAGTTAccccggtgtcgaggtaatatggTTAccccggtgtcgaggtaattgaggtaatatgtgcatgtaggtagag

Function

NR:

description
myocyte-specific enhancer factor 2B-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09261 MEF2B; MADS-box transcription enhancer factor 2B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603721.2 False 2987 mRNA 0.49 9 61637104 61655108
XM_021603722.2 False 2957 mRNA 0.49 9 61637104 61655108
XR_005051827.1 True 2840 mRNA 0.49 10 61637104 61655195

Neighbor

gene id symbol gene type direction distance location
nr2c2ap nr2c2ap coding upstream 37772 61590603 ~ 61599332 (+)
hapln4 hapln4 coding upstream 351438 61267215 ~ 61285666 (+)
tm6sf2 tm6s1 coding upstream 371898 61248572 ~ 61265206 (+)
LOC118964633 polr2e coding upstream 556097 61077504 ~ 61081007 (+)
LOC110524234 LOC106613716 coding upstream 694722 60939330 ~ 60942382 (+)
LOC110524251 LOC106613732 coding downstream 131252 61786447 ~ 61793643 (+)
gatad2ab NA coding downstream 153687 61808882 ~ 61840823 (+)
yjefn3 yjefn3 coding downstream 188821 61844016 ~ 62001312 (+)
cilp2 cilp2 coding downstream 351107 62006302 ~ 62030169 (+)
si:ch211-212d10.1 LOC106614002 coding downstream 413003 62068198 ~ 62072769 (+)
G423871 NA non-coding upstream 2473 61634344 ~ 61634631 (+)
G423859 NA non-coding upstream 15727 61620898 ~ 61621377 (+)
G423858 NA non-coding upstream 16969 61619835 ~ 61620135 (+)
G423857 LOC106613727 non-coding upstream 18040 61618490 ~ 61619064 (+)
G423856 NA non-coding upstream 24129 61612695 ~ 61612975 (+)
G423874 NA non-coding downstream 791 61655986 ~ 61656390 (+)
G423901 NA non-coding downstream 24426 61679621 ~ 61679853 (+)
G423906 NA non-coding downstream 30217 61685412 ~ 61685626 (+)
G423907 NA non-coding downstream 35513 61690708 ~ 61772270 (+)
G423926 NA non-coding downstream 77676 61732871 ~ 61733382 (+)
LOC110524226 LOC106573564 other upstream 941199 60694220 ~ 60695905 (+)
G420634 NA other upstream 2692887 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 3220328 58411240 ~ 58418268 (+)
G419452 NA other upstream 3737456 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 4269767 57352343 ~ 57367627 (+)
G423922 NA other downstream 66342 61721537 ~ 61722024 (+)
G424079 NA other downstream 450328 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 627957 62283054 ~ 62327772 (+)
G425224 NA other downstream 1389895 63045090 ~ 63051530 (+)
nfil3-4 LOC106614010 other downstream 2021219 63676409 ~ 63684848 (+)

Expression


Co-expression Network