LOC110524260 (LOC105011525)


Basic Information

Item Value
gene id LOC110524260
gene name LOC105011525
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62076569 ~ 62083302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603746.2
TTAATATTAATAAGATGGGCGTAACCGCAAAGGTCTCATCAATACATAAACCAGGAGGCCCCGCAACTCATTCGTTCCCATCTACTGCAGGTTCGTCGGAAGAGTCTCACGGTGTTTGTCGGCGTGGTTAAAAGGAAGGATGTCTGACGAAGGGAAGCTTTTTGTGGGTGGCCTGAGCTTTGACACTAATGAACAGTCATTAGAAGATGTGTTCTCCAAATATGGGCAAATATCTGAAGTTGTTGTAATTAAAGACAGGGAAACTCAGAGGTCCAGGGGCTTTGGTTTCGTCACCTTTGAGAACCCGGATGAGGCCAAGGATGCTATGCTGGCCATGAACGGCAAGTCACTTGACGGCAGACAGATCCGTGTCGACCAGGCTGGCAAGTCTGGCGGTGGTGGCAGGTCCGGGGGCGGATTCCGAGGGGGCTCGTCGGGTGgcagaggtggtggaggaggatttTTCCGTGGAggcagaggtggtggtggtggtggaagagGTGGGCGTGGCTTCTCACGAGGTGGTGGGGAGCGGGGATATGGCGGTGGACGTTACGACAACAGAAGTGGTGGCTCATACGGATCAGACCGAGGCTACTACAACAAAGACAGAGCGCAAGGAGGAGGATACGGAGATCGTTCTGGAGGTGACGAGGGCGGCTGGTAGGACGGAGACGACCGGACTGTCTGTCGTCTGGGCACGGCCCCTGGCAAGGCCTGGTCCCAGCCCAGGGCTTGCTGCTCCGCAACACTTTAAATCTTCTGAAACCGACCATGTAGATAAGAGCAGTCCTGGATAAGTGCGGGGAGGGCTGGCTCGCACTCCGAGCCTCCCACCACTGGTCTATTCCAAGTTTTTGTTTTTTAACTTTCTGGTTCTCCTTATTTGTTATTGAAAACTGCAGAGAACTACTTTTTAATTTACAGTTTTTGTGGGTAGCTCGAAAGAGCAAGGCTCGTGCTGTAGGCCGTTGCCTCACTTTGGGCCGTGCACGCAAAGAGGCACAACCTAAAAGACAAGGAATATATCTTGGATAGATAATGTTAACGCTTTTGTAGTTTTAACTCTGCTTTGTAACAAAGTACAAAAATGCTTGCACTTATTTTGTTTATGATTGACTGTTTTGCCAACTGATAATGGTGATGAGCCTGAATGAGGTAAATGCACACAAAGGTCTGAAACCATCACCACCATGTCTGCGCTGTTCTTCCTGACTGAGAGAGGAGAGTATGAGTAGAGACGTTCTCTAATCGACTGGGCTTGCTAGGATCGCTGTGGGTTCCGGTAAATGAGAACTTACTCATTGGTTTTCTGGAGCACTGACCTGTTGCTTGACTGTCCTGTCTATGGCAGGTTCTTGTCTAATTTATTTTGGTTTCTACTGAGaatggtttttattttattagctGCACATTTTAAataaggaatgttttttttttttgtgtatctGAGTCACACAATGGTTTCAAGTACACACAGCGCTGAATTAATGTGAAGCGGGACAGTTCTACTACTTGCAAGCTCTTTTCAACAAACATACTTTCTATGAGGATACAAATAGTGATTTCACAACTGTTCTCGTCATAGCATCAGATTGGTTTTGTATTAGATTTTTTTAAGCGTTCTGTATCTTCATGGTTGTATTTTTcctaaataaaaaatttaaaaaacatt
>XM_021603747.2
TTAATATTAATAAGATGGGCGTAACCGCAAAGGTCTCATCAATACATAAACCAGGAGGCCCCGCAACTCATTCGTTCCCATCTACTGCAGGTTCGTCGGAAGAGTCTCACGGTGTTTGTCGGCGTGGTTAAAAGGAAGGATGTCTGACGAAGGGAAGCTTTTTGTGGGTGGCCTGAGCTTTGACACTAATGAACAGTCATTAGAAGATGTGTTCTCCAAATATGGGCAAATATCTGAAGTTGTTGTAATTAAAGACAGGGAAACTCAGAGGTCCAGGGGCTTTGGTTTCGTCACCTTTGAGAACCCGGATGAGGCCAAGGATGCTATGCTGGCCATGAACGGCAAGTCACTTGACGGCAGACAGATCCGTGTCGACCAGGCTGGCAAGTCTGGCGGTGGTGGCAGGTCCGGGGGCGGATTCCGAGGGGGCTCGTCGGGTGgcagaggtggtggaggaggatttTTCCGTGGAggcagaggtggtggtggtggtggaagagGTGGTGGGGAGCGGGGATATGGCGGTGGACGTTACGACAACAGAAGTGGTGGCTCATACGGATCAGACCGAGGCTACTACAACAAAGACAGAGCGCAAGGAGGAGGATACGGAGATCGTTCTGGAGGTGACGAGGGCGGCTGGTAGGACGGAGACGACCGGACTGTCTGTCGTCTGGGCACGGCCCCTGGCAAGGCCTGGTCCCAGCCCAGGGCTTGCTGCTCCGCAACACTTTAAATCTTCTGAAACCGACCATGTAGATAAGAGCAGTCCTGGATAAGTGCGGGGAGGGCTGGCTCGCACTCCGAGCCTCCCACCACTGGTCTATTCCAAGTTTTTGTTTTTTAACTTTCTGGTTCTCCTTATTTGTTATTGAAAACTGCAGAGAACTACTTTTTAATTTACAGTTTTTGTGGGTAGCTCGAAAGAGCAAGGCTCGTGCTGTAGGCCGTTGCCTCACTTTGGGCCGTGCACGCAAAGAGGCACAACCTAAAAGACAAGGAATATATCTTGGATAGATAATGTTAACGCTTTTGTAGTTTTAACTCTGCTTTGTAACAAAGTACAAAAATGCTTGCACTTATTTTGTTTATGATTGACTGTTTTGCCAACTGATAATGGTGATGAGCCTGAATGAGGTAAATGCACACAAAGGTCTGAAACCATCACCACCATGTCTGCGCTGTTCTTCCTGACTGAGAGAGGAGAGTATGAGTAGAGACGTTCTCTAATCGACTGGGCTTGCTAGGATCGCTGTGGGTTCCGGTAAATGAGAACTTACTCATTGGTTTTCTGGAGCACTGACCTGTTGCTTGACTGTCCTGTCTATGGCAGGTTCTTGTCTAATTTATTTTGGTTTCTACTGAGaatggtttttattttattagctGCACATTTTAAataaggaatgttttttttttttgtgtatctGAGTCACACAATGGTTTCAAGTACACACAGCGCTGAATTAATGTGAAGCGGGACAGTTCTACTACTTGCAAGCTCTTTTCAACAAACATACTTTCTATGAGGATACAAATAGTGATTTCACAACTGTTCTCGTCATAGCATCAGATTGGTTTTGTATTAGATTTTTTTAAGCGTTCTGTATCTTCATGGTTGTATTTTTcctaaataaaaaatttaaaaaacatt
>XR_002473566.2
CTTAATATTAATAAGATGGGCGTAACCGCAAAGGTCTCATCAATACATAAACCAGGAGGCCCCGCAACTCATTCGTTCCCATCTACTGCAGGTTCGTCGGAAGAGTCTCACGGTGTTTGTCGGCGTGGTTAAAAGGAAGGATGTCTGACGAAGGGAAGCTTTTTGTGGGTGGCCTGAGCTTTGACACTAATGAACAGTCATTAGAAGATGTGTTCTCCAAATATGGGCAAATATCTGAAGTTGTTGTAATTAAAGACAGGGAAACTCAGAGGTCCAGGGGCTTTGGTTTCGTCACCTTTGAGAACCCGGATGAGGCCAAGGATGCTATGCTGGCCATGAACGGCAAGTCACTTGACGGCAGACAGATCCGTGTCGACCAGGCTGGCAAGTCTGGCGGTGGTGGCAGGTCCGGGGGCGGATTCCGAGGGGGCTCGTCGGGTGgcagaggtggtggaggaggatttTTCCGTGGAggcagaggtggtggtggtggtggaagagGTGGGCGTGGCTTCTCACGAGGTGGTGGGGAGCGGGGATATGGCGGTGGACGTTACGACAACAGAAGTGGTGGCTCATACGGATCAGACCGAGGCTACTACAACAAAGACAGAGCGCAAGGAGGAGGATACGGAGATCGTTCTGGAGGCGGTGCTGTTCTCTGGTGCACAGTGAGGCTGCCTCCTGTAGTTGAAATATGTTGAACTGAAGAAACAATATGTTGATGCCCCAGTTTAGCACTGCAAAATGCCAAGGTGACGAGGGCGGCTGGTAGGACGGAGACGACCGGACTGTCTGTCGTCTGGGCACGGCCCCTGGCAAGGCCTGGTCCCAGCCCAGGGCTTGCTGCTCCGCAACACTTTAAATCTTCTGAAACCGACCATGTAGATAAGAGCAGTCCTGGATAAGTGCGGGGAGGGCTGGCTCGCACTCCGAGCCTCCCACCACTGGTCTATTCCAAGTTTTTGTTTTTTAACTTTCTGGTTCTCCTTATTTGTTATTGAAAACTGCAGAGAACTACTTTTTAATTTACAGTTTTTGTGGGTAGCTCGAAAGAGCAAGGCTCGTGCTGTAGGCCGTTGCCTCACTTTGGGCCGTGCACGCAAAGAGGCACAACCTAAAAGACAAGGAATATATCTTGGATAGATAATGTTAACGCTTTTGTAGTTTTAACTCTGCTTTGTAACAAAGTACAAAAATGCTTGCACTTATTTTGTTTATGATTGACTGTTTTGCCAACTGATAATGGTGATGAGCCTGAATGAGGTAAATGCACACAAAGGTCTGAAACCATCACCACCATGTCTGCGCTGTTCTTCCTGACTGAGAGAGGAGAGTATGAGTAGAGACGTTCTCTAATCGACTGGGCTTGCTAGGATCGCTGTGGGTTCCGGTAAATGAGAACTTACTCATTGGTTTTCTGGAGCACTGACCTGTTGCTTGACTGTCCTGTCTATGGCAGGTTCTTGTCTAATTTATTTTGGTTTCTACTGAGaatggtttttattttattagctGCACATTTTAAataaggaatgttttttttttttgtgtatctGAGTCACACAATGGTTTCAAGTACACACAGCGCTGAATTAATGTGAAGCGGGACAGTTCTACTACTTGCAAGCTCTTTTCAACAAACATACTTTCTATGAGGATACAAATAGTGATTTCACAACTGTTCTCGTCATAGCATCAGATTGGTTTTGTATTAGATTTTTTTAAGCGTTCTGTATCTTCATGGTTGTATTTTTcctaaataaaaaatttaaaaaacatt
>XR_002473567.2
CTTAATATTAATAAGATGGGCGTAACCGCAAAGGTCTCATCAATACATAAACCAGGAGGCCCCGCAACTCATTCGTTCCCATCTACTGCAGGTTCGTCGGAAGAGTCTCACGGTGTTTGTCGGCGTGGTTAAAAGGAAGGATGTCTGACGAAGGGAAGCTTTTTGTGGGTGGCCTGAGCTTTGACACTAATGAACAGTCATTAGAAGATGTGTTCTCCAAATATGGGCAAATATCTGAAGTTGTTGTAATTAAAGACAGGGAAACTCAGAGGTCCAGGGGCTTTGGTTTCGTCACCTTTGAGAACCCGGATGAGGCCAAGGATGCTATGCTGGCCATGAACGGCAAGTCACTTGACGGCAGACAGATCCGTGTCGACCAGGCTGGCAAGTCTGGCGGTGGTGGCAGGTCCGGGGGCGGATTCCGAGGGGGCTCGTCGGGTGgcagaggtggtggaggaggatttTTCCGTGGAggcagaggtggtggtggtggtggaagagGTGGTGGGGAGCGGGGATATGGCGGTGGACGTTACGACAACAGAAGTGGTGGCTCATACGGATCAGACCGAGGCTACTACAACAAAGACAGAGCGCAAGGAGGAGGATACGGAGATCGTTCTGGAGGCGGTGCTGTTCTCTGGTGCACAGTGAGGCTGCCTCCTGTAGTTGAAATATGTTGAACTGAAGAAACAATATGTTGATGCCCCAGTTTAGCACTGCAAAATGCCAAGGTGACGAGGGCGGCTGGTAGGACGGAGACGACCGGACTGTCTGTCGTCTGGGCACGGCCCCTGGCAAGGCCTGGTCCCAGCCCAGGGCTTGCTGCTCCGCAACACTTTAAATCTTCTGAAACCGACCATGTAGATAAGAGCAGTCCTGGATAAGTGCGGGGAGGGCTGGCTCGCACTCCGAGCCTCCCACCACTGGTCTATTCCAAGTTTTTGTTTTTTAACTTTCTGGTTCTCCTTATTTGTTATTGAAAACTGCAGAGAACTACTTTTTAATTTACAGTTTTTGTGGGTAGCTCGAAAGAGCAAGGCTCGTGCTGTAGGCCGTTGCCTCACTTTGGGCCGTGCACGCAAAGAGGCACAACCTAAAAGACAAGGAATATATCTTGGATAGATAATGTTAACGCTTTTGTAGTTTTAACTCTGCTTTGTAACAAAGTACAAAAATGCTTGCACTTATTTTGTTTATGATTGACTGTTTTGCCAACTGATAATGGTGATGAGCCTGAATGAGGTAAATGCACACAAAGGTCTGAAACCATCACCACCATGTCTGCGCTGTTCTTCCTGACTGAGAGAGGAGAGTATGAGTAGAGACGTTCTCTAATCGACTGGGCTTGCTAGGATCGCTGTGGGTTCCGGTAAATGAGAACTTACTCATTGGTTTTCTGGAGCACTGACCTGTTGCTTGACTGTCCTGTCTATGGCAGGTTCTTGTCTAATTTATTTTGGTTTCTACTGAGaatggtttttattttattagctGCACATTTTAAataaggaatgttttttttttttgtgtatctGAGTCACACAATGGTTTCAAGTACACACAGCGCTGAATTAATGTGAAGCGGGACAGTTCTACTACTTGCAAGCTCTTTTCAACAAACATACTTTCTATGAGGATACAAATAGTGATTTCACAACTGTTCTCGTCATAGCATCAGATTGGTTTTGTATTAGATTTTTTTAAGCGTTCTGTATCTTCATGGTTGTATTTTTcctaaataaaaaatttaaaaaacatt

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K13195 CIRBP; cold-inducible RNA-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603746.2 False 1675 mRNA 0.47 7 62076569 62083301
XM_021603747.2 False 1654 mRNA 0.46 7 62076569 62083301
XR_002473566.2 False 1783 mRNA 0.47 8 62076569 62083302
XR_002473567.2 True 1762 mRNA 0.46 8 62076569 62083302

Neighbor

gene id symbol gene type direction distance location
si:ch211-212d10.2 LOC106613739 coding downstream 38575 62033465 ~ 62037994 (-)
tssk6 LOC106613736 coding downstream 233842 61841561 ~ 61842727 (-)
LOC110524252 LOC106613733 coding downstream 290027 61763118 ~ 61786542 (-)
LOC110524249 LOC106613730 coding downstream 397463 61660149 ~ 61679106 (-)
LOC110524247 LOC106613727 coding downstream 454214 61617987 ~ 61622355 (-)
cirbpb LOC106613741 coding upstream 1151 62084453 ~ 62092024 (-)
midn LOC106613743 coding upstream 134196 62217498 ~ 62251746 (-)
atp5f1d LOC106613744 coding upstream 193987 62277289 ~ 62281739 (-)
LOC110524266 LOC106613746 coding upstream 245537 62328839 ~ 62441794 (-)
LOC110524270 LOC106613752 coding upstream 502936 62586238 ~ 62680215 (-)
G424721 NA non-coding downstream 22503 62052911 ~ 62054066 (-)
G424719 NA non-coding downstream 29278 62046836 ~ 62047291 (-)
G424666 NA non-coding downstream 103328 61967747 ~ 61973241 (-)
G424664 NA non-coding downstream 132315 61938553 ~ 61944254 (-)
G424735 NA non-coding upstream 14602 62097904 ~ 62098122 (-)
G424804 NA non-coding upstream 168769 62252071 ~ 62252271 (-)
G424806 NA non-coding upstream 171100 62254402 ~ 62255328 (-)
G424807 NA non-coding upstream 172217 62255519 ~ 62255787 (-)
G424678 NA other downstream 75260 61998526 ~ 62001309 (-)
G424649 NA other downstream 149147 61888198 ~ 61927422 (-)
G424502 NA other downstream 416984 61659033 ~ 61659585 (-)
G424499 LOC106613729 other downstream 424794 61649967 ~ 61651775 (-)
G424474 NA other downstream 459325 61616870 ~ 61617244 (-)
LOC110524277 LOC106613757 other upstream 720636 62803832 ~ 62808176 (-)
G425612 NA other upstream 766702 62850004 ~ 62850247 (-)
G425647 NA other upstream 811357 62894659 ~ 62900503 (-)
LOC110524282 LOC106584262 other upstream 1176346 63257597 ~ 63260481 (-)
G425810 LOC106613766 other upstream 1217622 63300924 ~ 63303394 (-)

Expression


Co-expression Network