cirbpb (LOC106613741)


Basic Information

Item Value
gene id cirbpb
gene name LOC106613741
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62084453 ~ 62092024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473564.2
TCTGACCTGTGAACAGCAGCAATACCCAACAAAGCGTCTAGTATACCGGAAGACcacacgaagaagaagaagagctcATAAACAGGAGCCATTTTAACATCTTTCTCAGACGGCGCCAAACTACACAGAGATAATCCAAGATGTCTGACGAGGGGAAGCTTTTTGTTGGAGGATTGTGTTTTGACACCGATGAAACTTCACTGGAAGAGGCGTTTTCAAAATATGGAAACATTGCTAAAGTCGACGTTGTCAGAGATCGTGAGACGCAGAGATCCAGGGGTTTCGGCTTTGTGACTTTTGAAAACCCAGAAGATGCCAAAGACGCAATGGCTGCAATGAATGGCAAGTCGGTCGATGGCAGGATGATTCGTGTGGATGAAGCTGGCAAGTCAGGAGGAAGATCTGACCGCGGGGGTGGCTTCAGGGGCGGTTCTGGTGGTTTCAGGGGCGGTTCTGGTGGCTTCaggggaggcagaggaagagGTGGTGGAGGTTATGGTGGGGGAGAAAGAAGCTATGGTGGGGATCGCAGCTATGGCGGGGATCGCAGCTATGGCGGGGACCGCAGCTATGGGGGTGGCGGGGACCGCAGCTATGGAGGTGgctacaggagtggtggtggaggaggatacTCCTCTGGGGGTGGCAGCGGAGGTTACAGAGAGGCCAGGAGTGGAGGAGAAGGTGGATATGGTGGCCGCTCCGGGGGATCCTACCGAGACAGCTATGACAGCTATGGTTAAGCGTTGGATGTGAACAACTAACTCGAGGCCTGACTGCAACTGGTTCCTGCCGATGCTTTCTAGATTCAGCACAGGATGGCTTGCCCTGAAACGGCAAACTGCTCCTTGGGAGGTCGCTACCAGGAGAGATCTTGAAGGCTGAATTAGATGAGCAGCTGAACTGGACCTGGGGTGTAATTCAGCAGGATGCAGCGTCTTTGAAAGATGCGATGGAAATATGCCATGTAGAACAAACATTACTCTGACAAGTATAGTAAGGAATCCTGTCTGCTTTATTCATGGCATTTCTATCTGCTTTGTTAGACATTTGGCACCTGAACGTGGCCCTGACTCTGTCAAGACCAGCCTTAAAATGGGATTGGAAATCAAATCTGGTACTAACATGCACAATACTGTCATTTTTGCATGCTAATTAAATGCTGTATGCAGTgatgtgtattcatggatgccaaaggAAGCCAGGCTTCAAGAAATAAAATTCAAAACACGTTA
>XR_002473565.2
TCTGACCTGTGAACAGCAGCAATACCCAACAAAGCGTCTAGTATACCGGAAGACcacacgaagaagaagaagagctcATAAACAGGAGCCATTTTAACATCTTTCTCAGACGGCGCCAAACTACACAGAGATAATCCAAGATGTCTGACGAGGGGAAGCTTTTTGTTGGAGGATTGTGTTTTGACACCGATGAAACTTCACTGGAAGAGGCGTTTTCAAAATATGGAAACATTGCTAAAGTCGACGTTGTCAGAGATCGTGAGACGCAGAGATCCAGGGGTTTCGGCTTTGTGACTTTTGAAAACCCAGAAGATGCCAAAGACGCAATGGCTGCAATGAATGGCAAGTCGGTCGATGGCAGGATGATTCGTGTGGATGAAGCTGGCAAGTCAGGAGGAAGATCTGACCGCGGGGGTGGCTTCAGGGGCGGTTCTGGTGGTTTCAGGGGCGGTTCTGGTGGCTTCaggggaggcagaggaagagGTGGTGGAGGTTATGGTGGGGGAGAAAGAAGCTATGGTGGGGATCGCAGCTATGGCGGGGATCGCAGCTATGGCGGGGACCGCAGCTATGGGGGTGGCGGGGACCGCAGCTATGGAGGTGgctacaggagtggtggtggaggaggatacTCCTCTGGGGGTGGCAGCGGAGGTTACAGAGAGGCCAGGAGTGGAGGAGAAGGTGGATATGGTGGCCGCTCCGGGGGATCCTACCGAGACAGCTATGACAGCTATGGTTAAGCGTTGGATGTGAACAACTAACTCGAGGCCTGACTGCAACTGGTTCCTGCCGATGCTTTCTAGCACAGGATGGCTTGCCCTGAAACGGCAAACTGCTCCTTGGGAGGTCGCTACCAGGAGAGATCTTGAAGGCTGAATTAGATGAGCAGCTGAACTGGACCTGGGGTGTAATTCAGCAGGATGCAGCGTCTTTGAAAGATGCGATGGAAATATGCCATGTAGAACAAACATTACTCTGACAAGTATAGTAAGGAATCCTGTCTGCTTTATTCATGGCATTTCTATCTGCTTTGTTAGACATTTGGCACCTGAACGTGGCCCTGACTCTGTCAAGACCAGCCTTAAAATGGGATTGGAAATCAAATCTGGTACTAACATGCACAATACTGTCATTTTTGCATGCTAATTAAATGCTGTATGCAGTgatgtgtattcatggatgccaaaggAAGCCAGGCTTCAAGAAATAAAATTCAAAACACGTTA
>XM_021603744.2
CTGACCTGTGAACAGCAGCAATACCCAACAAAGCGTCTAGTATACCGGAAGACcacacgaagaagaagaagagctcATAAACAGGAGCCATTTTAACATCTTTCTCAGACGGCGCCAAACTACACAGAGATAATCCAAGATGTCTGACGAGGGGAAGCTTTTTGTTGGAGGATTGTGTTTTGACACCGATGAAACTTCACTGGAAGAGGCGTTTTCAAAATATGGAAACATTGCTAAAGTCGACGTTGTCAGAGATCGTGAGACGCAGAGATCCAGGGGTTTCGGCTTTGTGACTTTTGAAAACCCAGAAGATGCCAAAGACGCAATGGCTGCAATGAATGGCAAGTCGGTCGATGGCAGGATGATTCGTGTGGATGAAGCTGGCAAGTCAGGAGGAAGATCTGACCGCGGGGGTGGCTTCAGGGGCGGTTCTGGTGGTTTCAGGGGCGGTTCTGGTGGCTTCaggggaggcagaggaagagGTGGTGGAGGTTATGGTGGGGGAGAAAGAAGCTATGGTGGGGATCGCAGCTATGGCGGGGATCGCAGCTATGGCGGGGACCGCAGCTATGGGGGTGGCGGGGACCGCAGCTATGGAGGTGgctacaggagtggtggtggaggaggatacTCCTCTGGGGGTGGCAGCGGAGGTTACAGAGAGGCCAGGAGTGGAGGAGAAGGTGGATATGGTGGCCGCTCCGGGGGATCCTACCGAGACAGCTATGACAGCTATGCTACACACgagtaaaaacaaaaacaaacttcCTGATTGCAAGATCGTCCCATCGCTGGCTGTTTTTTTAAAGATGCGCTCTTCGAAGACTTTTTTTTTTCTGTTTGTGGTATCTGGTTCTAGTGTTTTCTTTAACAAATCAGCATCTTTAGTCCTTTTTTATCGTGTTGAAAGTATTCTTCAGGATCTCTGTCCTCGTGGCAGTAACTGAAATCCTGTAGCATTTAATTACTGTAAGCCTTGATGCTCAGTAAGGGTCTGAGTACCTTAAGCTCAATATGCCCTCCTGTTGCAGGGAGAATGCACTGGGAGAAAATCAAATTTGATAATTTTATAAATgcctttgtttgcaattaaacCTGTTTCTACTGTTGAATCGTAACCTGTTCAACACAGCCTGATAGCTTCTAAGACAAATTCAATCTTGACGATGTTCCTGCTCAATCGAAAGACTCAAATATCAGTAGCGACATGTTTCCATTTAATCTCATTTTTAACTGGAGTTGTAGTGAAATCTGGTCTTAAAAGAAAAAATGAAATCTATGAAATTTACACTAGAAGCTGGAAAAGCTGTGATTGTGCTCTAAAGACATGTTGCTCCTTCAGTTCTGTAATGCATTCCTTTAGTGTAGCAAGGTAGGAATGCTAAGTGGGAGCACTGGTTTCCAGCAGACCACCTTGATATTGCTAAAGATTTGTCAATACTCGGTATCCAAAGAGTGAATTACTTTGACTGGTGAACCTACTTCGGCTCTTTGGGCTGTATTCTAGGTGTTAGTTGCAGCCTTCTGCAGTTGGCCTAAGGTACTTTGCTCTTTGCAAACATGTGCATAATATGCTGATGGACTGAACGTTCACTCTCAATGTTACTTCAAGGATATGTGCTCTCTGTTCTGTTAACCAACACCTAAGATTTTTTTGTATATCCTGGCTTCATGAAGCCTATTAAACAACCCCGTTGAAAATG
>XM_036978019.1
TTCTAGATAATCCAAGATGTCTGACGAGGGGAAGCTTTTTGTTGGAGGATTGTGTTTTGACACCGATGAAACTTCACTGGAAGAGGCGTTTTCAAAATATGGAAACATTGCTAAAGTCGACGTTGTCAGAGATCGTGAGACGCAGAGATCCAGGGGTTTCGGCTTTGTGACTTTTGAAAACCCAGAAGATGCCAAAGACGCAATGGCTGCAATGAATGGCAAGTCGGTCGATGGCAGGATGATTCGTGTGGATGAAGCTGGCAAGTCAGGAGGAAGATCTGACCGCGGGGGTGGCTTCAGGGGCGGTTCTGGTGGTTTCAGGGGCGGTTCTGGTGGCTTCaggggaggcagaggaagagGTGGTGGAGGTTATGGTGGGGGAGAAAGAAGCTATGGTGGGGATCGCAGCTATGGCGGGGATCGCAGCTATGGCGGGGACCGCAGCTATGGGGGTGGCGGGGACCGCAGCTATGGAGGTGgctacaggagtggtggtggaggaggatacTCCTCTGGGGGTGGCAGCGGAGGTTACAGAGAGGCCAGGAGTGGAGGAGAAGGTGGATATGGTGGCCGCTCCGGGGGATCCTACCGAGACAGCTATGACAGCTATGGTAAGTATAAAGATGTAGCCTAGTTGTTGCCATGATCTCACTGTTAGTACGAACTAGAAATGTTTAGGAGGAACTGGACATGATTGCATAGACTCCCAGAACGACCCCTGTAAGACTTTGTTGCTCAGAAGCCGAAAGCTTGTGCCCTCTTGGATTAGTATGTTAAAATACTCATGTCTGCTCAAAGAATCAAACATTTCTTTGAAACGATGGATATCCAGCCCTCTACCACCCTATCCAAAAGCAGAAAGACATTCCTAGATTTTTTCACTCAGTTTCTTTTGAAGAGGCATAGGTTCTTTCAATGCCCTTGTCCTGGTGCTTTCCTGTTGCAATGATAACTGTGGCACAAAATATAAATGGGCTCTAGTCTACTGTGAGAAATGTCAGAATGCTGCAGTGCCTTTACACTTGTG
>XM_021603743.2
TCTGACCTGTGAACAGCAGCAATACCCAACAAAGCGTCTAGTATACCGGAAGACcacacgaagaagaagaagagctcATAAACAGGAGCCATTTTAACATCTTTCTCAGACGGCGCCAAACTACACAGAGATAATCCAAGATGTCTGACGAGGGGAAGCTTTTTGTTGGAGGATTGTGTTTTGACACCGATGAAACTTCACTGGAAGAGGCGTTTTCAAAATATGGAAACATTGCTAAAGTCGACGTTGTCAGAGATCGTGAGACGCAGAGATCCAGGGGTTTCGGCTTTGTGACTTTTGAAAACCCAGAAGATGCCAAAGACGCAATGGCTGCAATGAATGGCAAGTCGGTCGATGGCAGGATGATTCGTGTGGATGAAGCTGGCAAGTCAGGAGGAAGATCTGACCGCGGGGGTGGCTTCAGGGGCGGTTCTGGTGGTTTCAGGGGCGGTTCTGGTGGCTTCaggggaggcagaggaagagGTGGTGGAGGTTATGGTGGGGGAGAAAGAAGCTATGGTGGGGATCGCAGCTATGGCGGGGATCGCAGCTATGGCGGGGACCGCAGCTATGGGGGTGGCGGGGACCGCAGCTATGGAGGTGgctacaggagtggtggtggaggaggatacTCCTCTGGGGGTGGCAGCGGAGGTTACAGAGAGGCCAGGAGTGGAGGAGAAGGTGGATATGGTGGCCGCTCCGGGGGATCCTACCGAGACAGCTATGACAGCTATGGTAAGTATAAAGATGTAGCCTAGTTGTTGCCATGATCTCACTGTTAGTACGAACTAGAAATGTTTAGGAGGAACTGGACATGATTGCATAGACTCCCAGAACGACCCCTGTAAGACTTTGTTGCTCAGAAGCCGAAAGCTTGTGCCCTCTTGGATTAGTATGTTAAAATACTCATGTCTGCTCAAAGAATCAAACATTTCTTTGAAACGATGGATATCCAGCCCTCTACCACCCTATCCAAAAGCAGAAAGACATTCCTAGATTTTTTCACTCAGTTTCTTTTGAAGAGGCATAGGTTCTTTCAATGCCCTTGTCCTGGTGCTTTCCTGTTGCAATGATAACTGTGGCACAAAATATAAATGGGCTCTAGTCTACTGTGAGAAATGTCAGAATGCTGCAGTGCCTTTACACTTGT

Function

NR:

description
PREDICTED: cold-inducible RNA-binding protein B-like isoform X3

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473564.2 False 1235 mRNA 0.50 8 62084453 62092024
XR_002473565.2 False 1229 mRNA 0.50 8 62084453 62092024
XM_021603744.2 False 1703 mRNA 0.45 7 62086813 62092023
XM_036978019.1 False 1030 mRNA 0.50 5 62087797 62090951
XM_021603743.2 True 1153 mRNA 0.49 6 62087798 62092024

Neighbor

gene id symbol gene type direction distance location
LOC110524260 LOC105011525 coding downstream 1151 62076569 ~ 62083302 (-)
si:ch211-212d10.2 LOC106613739 coding downstream 46459 62033465 ~ 62037994 (-)
tssk6 LOC106613736 coding downstream 241726 61841561 ~ 61842727 (-)
LOC110524252 LOC106613733 coding downstream 297911 61763118 ~ 61786542 (-)
LOC110524249 LOC106613730 coding downstream 405347 61660149 ~ 61679106 (-)
midn LOC106613743 coding upstream 125474 62217498 ~ 62251746 (-)
atp5f1d LOC106613744 coding upstream 185265 62277289 ~ 62281739 (-)
LOC110524266 LOC106613746 coding upstream 236815 62328839 ~ 62441794 (-)
LOC110524270 LOC106613752 coding upstream 494214 62586238 ~ 62680215 (-)
LOC118964634 NA coding upstream 704593 62796617 ~ 62797240 (-)
G424721 NA non-coding downstream 30387 62052911 ~ 62054066 (-)
G424719 NA non-coding downstream 37162 62046836 ~ 62047291 (-)
G424666 NA non-coding downstream 111212 61967747 ~ 61973241 (-)
G424664 NA non-coding downstream 140199 61938553 ~ 61944254 (-)
G424735 NA non-coding upstream 5880 62097904 ~ 62098122 (-)
G424804 NA non-coding upstream 160047 62252071 ~ 62252271 (-)
G424806 NA non-coding upstream 162378 62254402 ~ 62255328 (-)
G424807 NA non-coding upstream 163495 62255519 ~ 62255787 (-)
G424678 NA other downstream 83144 61998526 ~ 62001309 (-)
G424649 NA other downstream 157031 61888198 ~ 61927422 (-)
G424502 NA other downstream 424868 61659033 ~ 61659585 (-)
G424499 LOC106613729 other downstream 432678 61649967 ~ 61651775 (-)
G424474 NA other downstream 467209 61616870 ~ 61617244 (-)
LOC110524277 LOC106613757 other upstream 711914 62803832 ~ 62808176 (-)
G425612 NA other upstream 757980 62850004 ~ 62850247 (-)
G425647 NA other upstream 802635 62894659 ~ 62900503 (-)
LOC110524282 LOC106584262 other upstream 1167624 63257597 ~ 63260481 (-)
G425810 LOC106613766 other upstream 1208900 63300924 ~ 63303394 (-)

Expression


Co-expression Network