atp5f1d (LOC106613744)


Basic Information

Item Value
gene id atp5f1d
gene name LOC106613744
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62277289 ~ 62281739 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473568.2
CTTCATGCTTTGAGCACTCATAAGGAATTGTGGGTAGGTTACCAACGTCCTTGTCCTATCAGGCGCACACTGTTTGACTGACTTCACACAAGGGCTAGGGGATCCTTTCGTTTCGGGTTGAACCTGAGTTAGATTTATTCCACAAAAATGATGGCAGCAAGGTTTCTCCGTCGCTCTATTCCTGTATTGAGGCAAGCAAGATGTTACGCCGACGCACCCTCAGGCTCTTCCCAGATGTCCTTCACATTTGCGTCTCCAACGCAGGTGTACTTCAAGGAGGCCAGTGTGAAACAGGTTGATGTGCCCACACTGACTGGTGCTTTTGGTATCCTCCCTGCTCACGTCCCCACGCTGCAGGTCCTCAGGCCTGGCGTGGTCACAGTGTTCAACGATGATGGCTCCGCAGCTAAATTCTTTGTGAGCAGCGGGTCAATCACAGTGAACGCAGACTCCTCAGTGCAGCTGCTGGCTGAGGAGGCCTTCCCCTTGGACCAGCTGGATGTGGCTGCTGCCAAGGCCAACCTGGAGAAGGCCCAGTCTGAGATGGCATCAGCGTCTGACGAGGCTGCCAGGGCTGAGGTCCAGATCAACATAGACGCCAACGAGGCCATCGTCAAAGCCCTGGAGTAGGCCATGGGACTGGTCTCTGTGGGGGATCACAACGACTTGATCGCTGATTATCGTGGCAAGTGTCCATCCAGAGATGTCGTGTTGGTATAACAGAAATGAAAATTCTCCAACTTTGTTTCCCTGCCCCGTGAAGTCAGTAACTGCAAGATCTCATGCTTGCTTTGTACAGTGGAATGAAATTACCAATAAATTTCTTTGGATTTACCTGCCAGTC
>XM_021603750.2
CTTCATGCTTTGAGCACTCATAAGGAATTGTGGGTAGGTTACCAACGTCCTTGTCCTATCAGGCGCACACTGTTTGACTGACTTCACACAAGGGCTAGGGGATCCTTTCGTTTCGGGTTGAACCTGAGTTAGATTTATTCCACAAAAATGATGGCAGCAAGGTTTCTCCGTCGCTCTATTCCTGTATTGAGGCAAGCAAGATGTTACGCCGACGCACCCTCAGGCTCTTCCCAGATGTCCTTCACATTTGCGTCTCCAACGCAGGTGTACTTCAAGGAGGCCAGTGTGAAACAGGTTGATGTGCCCACACTGACTGGTGCTTTTGGTATCCTCCCTGCTCACGTCCCCACGCTGCAGGTCCTCAGGCCTGGCGTGGTCACAGTGTTCAACGATGATGGCTCCGCAGCTAAATTCTTTGTGAGCAGCGGGTCAATCACAGTGAACGCAGACTCCTCAGTGCAGCTGCTGGCTGAGGAGGCCTTCCCCTTGGACCAGCTGGATGTGGCTGCTGCCAAGGCCAACCTGGAGAAGGCCCAGTCTGAGATGGCATCAGCGTCTGACGAGGCTGCCAGGGCTGAGGTCCAGATCAACATAGACGCCAACGAGGCCATCGTCAAAGCCCTGGAGTAGGCCATGGGACTGGTCTCTGTGATGTCGTGTTGGTATAACAGAAATGAAAATTCTCCAACTTTGTTTCCCTGCCCCGTGAAGTCAGTAACTGCAAGATCTCATGCTTGCTTTGTACAGTGGAATGAAATTACCAATAAATTTCTTTGGATTTACCTGCCAGT

Function

NR:

description
ATP synthase subunit delta, mitochondrial-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02134 ATPeF1D, ATP5D, ATP16; F-type H+-transporting ATPase subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473568.2 False 844 mRNA 0.52 6 62277289 62281739
XM_021603750.2 True 791 mRNA 0.52 5 62277290 62281739

Neighbor

gene id symbol gene type direction distance location
midn LOC106613743 coding downstream 25543 62217498 ~ 62251746 (-)
cirbpb LOC106613741 coding downstream 185265 62084453 ~ 62092024 (-)
LOC110524260 LOC105011525 coding downstream 193987 62076569 ~ 62083302 (-)
si:ch211-212d10.2 LOC106613739 coding downstream 239295 62033465 ~ 62037994 (-)
tssk6 LOC106613736 coding downstream 434562 61841561 ~ 61842727 (-)
LOC110524266 LOC106613746 coding upstream 47100 62328839 ~ 62441794 (-)
LOC110524270 LOC106613752 coding upstream 304499 62586238 ~ 62680215 (-)
LOC118964634 NA coding upstream 514878 62796617 ~ 62797240 (-)
LOC110524277 LOC106613757 coding upstream 522093 62803832 ~ 62808176 (-)
LOC110524279 LOC106613762 coding upstream 637839 62919578 ~ 63214903 (-)
G424809 NA non-coding downstream 15989 62260983 ~ 62261300 (-)
G424808 NA non-coding downstream 18383 62258656 ~ 62258906 (-)
G424807 NA non-coding downstream 21502 62255519 ~ 62255787 (-)
G424806 NA non-coding downstream 21961 62254402 ~ 62255328 (-)
G424804 NA non-coding downstream 25018 62252071 ~ 62252271 (-)
G424823 NA non-coding upstream 433 62282172 ~ 62282376 (-)
G424830 NA non-coding upstream 8598 62290337 ~ 62431657 (-)
G424868 NA non-coding upstream 65985 62347724 ~ 62348198 (-)
G424878 NA non-coding upstream 195193 62476932 ~ 62485576 (-)
G424903 NA non-coding upstream 212750 62494489 ~ 62494789 (-)
G424678 NA other downstream 275980 61998526 ~ 62001309 (-)
G424649 NA other downstream 349867 61888198 ~ 61927422 (-)
G424502 NA other downstream 617704 61659033 ~ 61659585 (-)
G424499 LOC106613729 other downstream 625514 61649967 ~ 61651775 (-)
G424474 NA other downstream 660045 61616870 ~ 61617244 (-)
G425612 NA other upstream 568265 62850004 ~ 62850247 (-)
G425647 NA other upstream 612920 62894659 ~ 62900503 (-)
LOC110524282 LOC106584262 other upstream 977909 63257597 ~ 63260481 (-)
G425810 LOC106613766 other upstream 1019185 63300924 ~ 63303394 (-)

Expression


Co-expression Network