LOC110524271 (LOC106613753)


Basic Information

Item Value
gene id LOC110524271
gene name LOC106613753
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62689887 ~ 62746926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603761.2
acacactaactctttctgtgactctctctccctatcacaccctcacacacacttacacatgcacacattcactctctctcctcattcaacTCATTCTCAGCCACGGGTCAGCAGCACAGACAAGCACCTTATTCCAGTccagctggagagaggagcatCGCAAGGTGCACACATCGCAAGACAGGACACTGACTGACTCTGCAGCCGTAAAAGAAGGACGCAAGCCAAGGAACAGAACAAGCTTTCGGAGAACAAGGAAACAACAAAAAAGAACAGATTGCTTTTGGCAATGGATTTACAAAGTGAATTGTTTTCCGgtgaataaaagctgaaatacaaAGAAGAGGAGATCCTCATCAGACACACAAATTAAGAAACAAACTCATCTGGGAATAAGGACTGGTTGGAAGTCCAGGTTCCTCTCTGCTCTGTTGTTTGGAAGCCCAGGCTCCTCTCTGCTCTGATCCTCAGTGACAGGGTCTGCTGCTCCCTCGATCATCACCCCTTCCCACCCTCAGAGAGCGACCACTCACCTGGACCACACAGCCCGGGTCTCCAGCCAGCCAGCATGCATACTGCCTGTGCAATGTGCACCTTGGGAGTCTGACTCACCATGTGCAGATGGATGCCACCCGTCGCTAGTCTCCGTCCTGACCTCGCTGCCATTGGCACTGCCCACGCTGGGCTTCCGCCCTTGCCCAGTGCTGCATCCCTTCGCTTGGCGTTCCTCACCCTGCTCCTGGTGGCTGGCACAGCTCTGGGGGGCTGCCCGCTCGGGGTAGGGCATGAACCCCTCCAAGTACTGGCGAGAGGCATCAACTGCTCATGGACACTGGAGCGGCACACACGCAGTTACAATCACCTAGAGGGCGACGTCCGACTACGGCGGCTCTACTCCGCCAACAAGTTCTTTCTCTGTATCGACAAAACAGGCAAGGTGGATGGCACCAGACGGAAAAACTACGCTGAAAGTCTAATGGAAATCCGATCTGTCAGTGTGGGAGTCGTGGCCATCAAATCTGTCAGCACCGGGCTGTACTTAGCAATGTCCAAAAAAGGCACACTCTTTGGATCGaTGAAGTACAACCCTAATTGTAAGTTCAAGGAGCGCATCGAGGAGAATGGCTACAACACGTACGCCTCCCTGCGCTGGAAACACGGCGGCAGGCAGATGTTTGTGTCTCTGAACGGTAGGGGGAAGCCCCGGCGAGGCCACAAAGCTCGGAGGAGACACCCCTCCACCCACTTCCTCCCCATGCTGCCCTCATAGCTGGACAACAGGGCTCTGCTCTGCTTTGCAACCAGCCCACCACAGTCCCAGTCCATCCAACTAGTGTTGTTGTTATCAAGATAACTATTGATGATGTTATTATTATTCTATACATCCCCTCTCCCATATATGTACATTTGTTGGGGTTTTATACACAATTTTGTTTGTCGAGATCGCAGTGGGGGCATAATACAGTACGTTTAAGTTATTCCTTTTTTAGTGTGAGGTCCAGAAGTAAAGCTGCTAATATTGTGTAAATACAGCATgtctattattattatgattggTTATCAAGCTGAGGGATGACATTGATGACGCTCTTCTGTGTTCAGGAGTAATTTTGACACCACCGTCTTCTGCAAAAGTGTGTAATTGAAACATGCCCCCCCTTTAAAGGGTACGAGAATTGTCTATATATtgcctccctcccatcccttcatTTGTGACTCTATAGGAGACAATGCTTTTCCTTGAGTGACCTTACAATATGCTATTAAAGCAAACAACTGGTGAAAGAAGCCTGACAAACAGTGAACAGATTTGAACATTGATTTAGGTTGTCAAATATGTTCATCTGAGCAAGTAACTAAAGCATTTGAGAGAGGACTCTCTTAAGATACTGAATGTCCTTTACAATAAAAGGACTCTTGCACTTGACTGGACTTCAGAGGGGACAGAATTCCTTGTTGACGAAAACATTTGGACTGAACGTTCAAACCCATGAATGTCTGCTATAAGAAAAAAACATAAACTGACGACATCTGGCTATCGGTTCTTTTGGGTTTCTGAAATGAGTGTGTGAGCTCTGCAGAagtcccactgggcaaaaactagTTAAAACAACAttaccacatcatttcaacaaaataattcaGTGTGATGACGTTGACTCAACgtgaaaactgattggatttgcaaaaagtcatcaacctaAGGGAATTTAGCCATTTTCCACCTACATGTTTACCTAAATTCAATGACATGGTGACTCAACCAAATATAAATCCAAACTAGATGCTGaaatgacatctgtgcccagtggggtgtGCTTCAGCCTCCTTCTCTCATTCAATAATCCTACACCACTAGCTCAGGGGTCAATCTTTGAAAGTGGGACTCATGACATTATCTCTGATATGTCAGTTCCAGAGTCCAGTAGTAAAATGCATACGGTACTCCGTTTGAAACACGTTGAGCATTTGAGGCTGTATGTACACTTCTTCACAGTGCTAAGACTACCCATTCATTTCTAACGTATGGTAACTGGTTATTGCATTATCTTGTCAGGTCTTGTTACCATTTTCAAAAACCTGTTGCAAATAGAACTTTTAATATATTTAAGCCTTTTTGTACCGTATAACATTTGAAGTTGATGTTATTGCCTCCATTTTGTGTCTAGTCTGAAAATCCTAACTGTATTCCATTCCATATTTTAGTCTATACTGTGTGTTACTGTAATATGGCACCTCCTAACATCACAATCATCATCTACTGAGCGGTCAGCAGTGACAGTGTCTACCAGAACACCCGTTTCAACTATCAGTCAGCTATTAAGCAGACAATATTGGTCTGTCAATTGAACACTGTCATCATAACAACATAAGCGAGTGCCTTGATTCATGTTCAGCCTGGTGAACTTCAATAAAATGCACCTAAGTTACACCATTTTCAAGGAGTCACTTATCTCCATCAGAGTTACATCATCTGCATTATCATCATAACAACATGAACATTCAATGCTGTAGTGGACCTCCCCTGACTTGTAAAATACTTGTGCCGATGAGCTCTTCAATGGGCTATCATGGGTCTTTAATCACAATGAAGGCCTGGTAGCATGGGAGGCCATTGAATCTTTTCACCCTGCAGATTGGAAAGATGGGGATGAATGGCCTCTATTGGGGGGGAGAAAGGCTAACCTTTCAGACTGTCAATGTGACATTTCTTTGAAGGGAAACATGTCTAGTCAAATAGCTTAATGTCGCTCTGCTGTTCGATCTAAAGGCCTGCCAAACAATTGGATGTTGGTGTGAGGGTCTAAGGAGACTTTGAGTGTGTGAGCTCTTTTGTTTCCAATACCcttacagttttacatcttttgAGTTGAAGACTTGGCTAAAGGTTTCCTGTGTCTTAGTGGGGGACGTTTCGGCAGCGACCTATATTGAATCTTTAGAGTGCCACATGACAAATCTGTAGGGTcttcccagcaaaccaaaattggttctgttAGGCTGCAGAAAATATTCTCATAACATGTAAACTGTCCAGTCGAGGTGAAGATTATgaaatgtttgtataaaacatttgcctgatgttacaagaacattcccagaacaaaTTATGTCTGTTCTGTAAACATTTCCAGAATGTTCCAtcaggttgtgggaacagtctagTGAGAAAATTGTGTGATATGTTCCCGAAACACAAAATCTGTCTAGTTGTGCGGAAGATTCTACAATGTTTATTTTAGGGTTCCAGAAACATTCCACTGATGTTACAACAATGTCCTCAGAACACATTTCGCCTGTTCTTTAACTGATCCCAGAATGTTTTATTAGGTTGTGGTAATACTGTagatatgttcccaaaacacaaaaacgGTCTAGTTGTGCTAACATTCAGACAATATTTGTATTAGGCTGCACAACACATTCCATTGATGTTGCAGGAATGTTGACAGAACAACCTTTCTGAGTTCTTTATGAATCTTGAAGAAATAAAGATATCCTCTCTTTTAGTAGAGTATACCTGAGCCTCAATTCCCCCGTT
>XM_036978025.1
CATATGGGCAGTGTGCGTCACCGCTGGATAGGCTGCGTTTCCACTGTCAAAATTCATGCCATAACCTTCTGCGTTACCGCTAAATCAGCTTTTAGTTGCAAACTGAAAACTAACGTGCGTTTGACGCTAGAGCGGTCTTAACGCCAGCCGAAAATAGATGCCTGGAGGTCTAATGGAAATCCGATCTGTCAGTGTGGGAGTCGTGGCCATCAAATCTGTCAGCACCGGGCTGTACTTAGCAATGTCCAAAAAAGGCACACTCTTTGGATCGaTGAAGTACAACCCTAATTGTAAGTTCAAGGAGCGCATCGAGGAGAATGGCTACAACACGTACGCCTCCCTGCGCTGGAAACACGGCGGCAGGCAGATGTTTGTGTCTCTGAACGGTAGGGGGAAGCCCCGGCGAGGCCACAAAGCTCGGAGGAGACACCCCTCCACCCACTTCCTCCCCATGCTGCCCTCATAGCTGGACAACAGGGCTCTGCTCTGCTTTGCAACCAGCCCACCACAGTCCCAGTCCATCCAACTAGTGTTGTTGTTATCAAGATAACTATTGATGATGTTATTATTATTCTATACATCCCCTCTCCCATATATGTACATTTGTTGGGGTTTTATACACAATTTTGTTTGTCGAGATCGCAGTGGGGGCATAATACAGTACGTTTAAGTTATTCCTTTTTTAGTGTGAGGTCCAGAAGTAAAGCTGCTAATATTGTGTAAATACAGCATgtctattattattatgattggTTATCAAGCTGAGGGATGACATTGATGACGCTCTTCTGTGTTCAGGAGTAATTTTGACACCACCGTCTTCTGCAAAAGTGTGTAATTGAAACATGCCCCCCCTTTAAAGGGTACGAGAATTGTCTATATATtgcctccctcccatcccttcatTTGTGACTCTATAGGAGACAATGCTTTTCCTTGAGTGACCTTACAATATGCTATTAAAGCAAACAACTGGTGAAAGAAGCCTGACAAACAGTGAACAGATTTGAACATTGATTTAGGTTGTCAAATATGTTCATCTGAGCAAGTAACTAAAGCATTTGAGAGAGGACTCTCTTAAGATACTGAATGTCCTTTACAATAAAAGGACTCTTGCACTTGACTGGACTTCAGAGGGGACAGAATTCCTTGTTGACGAAAACATTTGGACTGAACGTTCAAACCCATGAATGTCTGCTATAAGAAAAAAACATAAACTGACGACATCTGGCTATCGGTTCTTTTGGGTTTCTGAAATGAGTGTGTGAGCTCTGCAGAagtcccactgggcaaaaactagTTAAAACAACAttaccacatcatttcaacaaaataattcaGTGTGATGACGTTGACTCAACgtgaaaactgattggatttgcaaaaagtcatcaacctaAGGGAATTTAGCCATTTTCCACCTACATGTTTACCTAAATTCAATGACATGGTGACTCAACCAAATATAAATCCAAACTAGATGCTGaaatgacatctgtgcccagtggggtgtGCTTCAGCCTCCTTCTCTCATTCAATAATCCTACACCACTAGCTCAGGGGTCAATCTTTGAAAGTGGGACTCATGACATTATCTCTGATATGTCAGTTCCAGAGTCCAGTAGTAAAATGCATACGGTACTCCGTTTGAAACACGTTGAGCATTTGAGGCTGTATGTACACTTCTTCACAGTGCTAAGACTACCCATTCATTTCTAACGTATGGTAACTGGTTATTGCATTATCTTGTCAGGTCTTGTTACCATTTTCAAAAACCTGTTGCAAATAGAACTTTTAATATATTTAAGCCTTTTTGTACCGTATAACATTTGAAGTTGATGTTATTGCCTCCATTTTGTGTCTAGTCTGAAAATCCTAACTGTATTCCATTCCATATTTTAGTCTATACTGTGTGTTACTGTAATATGGCACCTCCTAACATCACAATCATCATCTACTGAGCGGTCAGCAGTGACAGTGTCTACCAGAACACCCGTTTCAACTATCAGTCAGCTATTAAGCAGACAATATTGGTCTGTCAATTGAACACTGTCATCATAACAACATAAGCGAGTGCCTTGATTCATGTTCAGCCTGGTGAACTTCAATAAAATGCACCTAAGTTACACCATTTTCAAGGAGTCACTTATCTCCATCAGAGTTACATCATCTGCATTATCATCATAACAACATGAACATTCAATGCTGTAGTGGACCTCCCCTGACTTGTAAAATACTTGTGCCGATGAGCTCTTCAATGGGCTATCATGGGTCTTTAATCACAATGAAGGCCTGGTAGCATGGGAGGCCATTGAATCTTTTCACCCTGCAGATTGGAAAGATGGGGATGAATGGCCTCTATTGGGGGGGAGAAAGGCTAACCTTTCAGACTGTCAATGTGACATTTCTTTGAAGGGAAACATGTCTAGTCAAATAGCTTAATGTCGCTCTGCTGTTCGATCTAAAGGCCTGCCAAACAATTGGATGTTGGTGTGAGGGTCTAAGGAGACTTTGAGTGTGTGAGCTCTTTTGTTTCCAATACCcttacagttttacatcttttgAGTTGAAGACTTGGCTAAAGGTTTCCTGTGTCTTAGTGGGGGACGTTTCGGCAGCGACCTATATTGAATCTTTAGAGTGCCACATGACAAATCTGTAGGGTcttcccagcaaaccaaaattggttctgttAGGCTGCAGAAAATATTCTCATAACATGTAAACTGTCCAGTCGAGGTGAAGATTATgaaatgtttgtataaaacatttgcctgatgttacaagaacattcccagaacaaaTTATGTCTGTTCTGTAAACATTTCCAGAATGTTCCAtcaggttgtgggaacagtctagTGAGAAAATTGTGTGATATGTTCCCGAAACACAAAATCTGTCTAGTTGTGCGGAAGATTCTACAATGTTTATTTTAGGGTTCCAGAAACATTCCACTGATGTTACAACAATGTCCTCAGAACACATTTCGCCTGTTCTTTAACTGATCCCAGAATGTTTTATTAGGTTGTGGTAATACTGTagatatgttcccaaaacacaaaaacgGTCTAGTTGTGCTAACATTCAGACAATATTTGTATTAGGCTGCACAACACATTCCATTGATGTTGCAGGAATGTTGACAGAACAACCTTTCTGAGTTCTTTATGAATCTTGAAGAAATAAAGATATCCTCTCTTTTAGTAGAGTATACCTGAGCCTCAATTCCCCCGTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603761.2 False 4042 mRNA 0.44 3 62689887 62746926
XM_036978025.1 True 3238 mRNA 0.41 3 62739754 62746926

Neighbor

gene id symbol gene type direction distance location
hcn2 LOC106613751 coding upstream 129336 62493156 ~ 62560551 (+)
bsg bsg coding upstream 199095 62476874 ~ 62490792 (+)
LOC110524269 bsg coding upstream 204540 62479785 ~ 62485347 (+)
LOC110524267 LOC106613748 coding upstream 215742 62468263 ~ 62474145 (+)
LOC100301654 LOC106613747 coding upstream 240127 62444675 ~ 62449760 (+)
LOC110524272 LOC106613754 coding downstream 26174 62725130 ~ 62785594 (+)
LOC110524274 LOC106613755 coding downstream 45053 62791979 ~ 62796480 (+)
LOC110524275 LOC105011538 coding downstream 50778 62797704 ~ 62802340 (+)
LOC110524276 LOC106613760 coding downstream 61995 62808921 ~ 62821203 (+)
LOC110524278 LOC106613761 coding downstream 138475 62885401 ~ 62892180 (+)
G424285 NA non-coding upstream 83250 62529327 ~ 62606637 (+)
G424288 NA non-coding upstream 85801 62533513 ~ 62604086 (+)
G424193 NA non-coding upstream 256863 62416223 ~ 62433024 (+)
G424195 NA non-coding upstream 320633 62322402 ~ 62369254 (+)
LOC110524265 LOC106613745 non-coding upstream 362120 62283054 ~ 62327772 (+)
G425085 NA non-coding downstream 40033 62786959 ~ 62788098 (+)
G425086 NA non-coding downstream 41287 62788213 ~ 62788412 (+)
G425090 NA non-coding downstream 42102 62789028 ~ 62789271 (+)
G425091 NA non-coding downstream 43410 62790336 ~ 62790704 (+)
G425097 NA non-coding downstream 65812 62812738 ~ 62812939 (+)
G424079 NA other upstream 584015 62105523 ~ 62105872 (+)
G423922 NA other upstream 967863 61721537 ~ 61722024 (+)
LOC110524226 LOC106573564 other upstream 1993982 60694220 ~ 60695905 (+)
G420634 NA other upstream 3745670 58942728 ~ 58944217 (+)
G425224 NA other downstream 298164 63045090 ~ 63051530 (+)
nfil3-4 LOC106614010 other downstream 929488 63676409 ~ 63684848 (+)
sac3d1 sac3d1 other downstream 1430102 64177028 ~ 64183138 (+)
LOC110522985 NA other downstream 1496676 64243153 ~ 64244790 (+)
G427476 NA other downstream 2245175 64992101 ~ 64997138 (+)

Expression


Co-expression Network