LOC110524275 (LOC105011538)


Basic Information

Item Value
gene id LOC110524275
gene name LOC105011538
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62797704 ~ 62802340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603764.2
CAGGTGTCATCTGTCACTCATAATAATTGATGTGCAACTGTCTCACCCAGAGGTTTCACCCAAGTAGCCTACCATTTGTTAAACCATACCTTTTTTGTTAAACCAACAGGGTCTTACCTTTGATCAATATCGTTCGACAGTTTACCAAAAACGAAACCTGAGGTCACCACCACAATGACAACAATTCCCATTGTTCATTGCTCTCACGTTCACCTCCCTCTCTACTTTCATCCCTCCTCAATGTTCTATGGGGGCTGTAGTTTTTTCTCCCATGGAAGTATCCTCCCATTTTCCATAGGTTTCGCGAGGTTTGCATGGGCGGCAGTCTGCATTTCTCTGCAGGAAGAATTGAATATTTTTGGGATGAAATTCGTGTACAGCAGTATTTGAATTTTTGGAGGGATGTCCAAGAAAAGGGGCAGAAAGCGGAGTAGCGGGGAGCTGAGTGATTCCACAGTGATGACCCCTGACCCCAACAGTCTCCTGGGAGTAAGAATACAGCACAATTGGAGGGAGAAGGGCAACCAGAGCAAATGGAAAGGCACTGTCTTGGACCGTCTCAGTGTCAACCCCTCACTATTTATGGTCAAGTACGATGGGTTTGACTGTGTCTACGGCATCGAGCTATTCAAGGACGAAAGGGTTTCTAATCTACAGGTCCTGACAGAGAAAGTTGTCAACAACAAGATCAAGGTTCCTCATGGGGCGGAGGAGTTGGTAGGCAAAGCGGTGGAACACCTATTTGagaaggaggatggagagaagaatGAGTGGCGAGGCATGGTCCTCTCCAGGGCTCCCATCATGACTAACTGGTATTACATCACCTATGAGAAGGACCCCGTGCTCTACATGTACCAGTTGTGGGACGACTACGCAGATGGAGATCTCAGGATCTTACCTGAAGCAGAAAATAAGCACTTGCTTCCGGCCGACCGAAAGCCCGGCGAGGAGACTGAGAGCTTAGTGGGGAAGCAGGTTGAGTATGTTACTGACAAAGGTGTGAAGCGAACAGGCCTGGTGATCTACCAAGTCCCTGCCAAGCCTTCTGTATACTACATCAAATACGACGATGACTTTCACATCCATGTCTACGACCTGGTCAAGACCACCTAGGACACTTGATTGCTCACTCCATTGCTTACTTTTCACgtatcctcctcactctctctccatctctcttaagGTCCTGGACGGTATAACAGTTACGCTTTATTATTCAGGAAGTGCAATCTTTTATTCCACATTTAAAACTAGTTCTATGGTATGCACAGCAGAACTGTAGCAATGCTATTGTAGGCCACTAGGAGGAGAGTGGGAACATGTACACTTGGAAGGACCTATTTAAACCTCCTCACTTCTTCAGTTACCCCATTTGGTTGTTGTGCTGCACAGTAGATTCACATCTCGGACAGTCCAGGAGTGCACCTTGCCCTACAATGACAGACTTACTGTAAAGTGCAATAACGACCGCGTTTGAATTGTCTCCCACATCCTGATGCTCAATTATCTTTATTCAAAGCTGAACTGAATTATATATTATAAAACTAATAGTTAAATCTGGCCCCGATAGCCATTCATATGTGGTCCTTGAATGACCAAACAGCAAGCATGATGTATAGGTGAATATTTGTAGAGACTAGTTTGAGCTGTAGTGTTCAGTGAAGCCTTTGAAGGAGAAATGCAATAAGCTGTGATGCCCCTGAACgtataatttttttgtttttaaataatgCCTTTATTAATAGGCAACTATGTTTGATTTATGTGTCAGTCAGTTCATAGACAATCATTCCTTGATGAACCCACAGTGCTATCATTGGCTTCATAGTACTGGGTTGCACTGGCCTAGGAGTACTGATGATTCAATTACTAGTTTGAACATCAAAACAATTATTCATAATGCTGAATCAAGACTTGTTAGAAACAAGGAATACAGGTCTTCATAAAGTTCGGGCAAGTTTTTCCTGACCAGACAAACCTGATTAATTTGTAGAGATTGGGAAAAGGCCTTAACAATACCTGACCAGGTTCAGAATCCCAACATCATCAGACTATGATTAGCTCAAGTGGAATAGAGGCAGTGCTTTACACTACATTCTGATCTTGAATAGAAAACAAACATAAAGTGCCTTCAGGCTGATCATGTCgccatactgtatatatttgctAACCGCTCACAATTTTATTCCATTTACTGTTAAGGCCACTATTTGGTCAGTATTAGTCAAAGTAAAAAATGCTTTAATGAAAAAGTGTCAAATGCTGCGTACCAGGTTTTTGCTATTGTCTGTTTGTATAAGAGGATATGTGCAATGTTTGGCAGTTAATGCAGTATAAGACTATTTCCTCCAATCGAACATCCATGACCGTTGATTAGTCtcattcaaatgttgatattgtaGGGTGCACTTTAAATTACTCACATAAATATGCTAAAGATTTGGCACATTGTCTTTTTCTGTCAAGATACTTTTTTTGTGCAAGAACAAGTGGCATATTGCAGCATCGGTATATCATAATGGTAAAAACGCATGGAGAAAAGAAAAGTTATAACACGCATACAGTATTTAATCTAACTTTTTTGTGTAGTGTATTGTAAATGTATGCTGTTGTGAATACTCCtgttatattgtaaatatcccaTTGAAATACCAGCTTTAAAGTCCATCTAGAATTCTCACCTAGAGAAATGCTGCAAAGACTGCATTCAAAAAGCCTGCAGCCTGGCTGGCTTCActttttaaacttattttaaaGACTTGGGAGCTACAGTACATAATGTAATCCAAGGAAGTCCAAAACGCAAATGTTTTGGCTAGAAGTATTTAAATTTAGTCTTCTGTCCTTAGTCTCACTCCagggcatacagtgcattcatttACAGTGCATTGGTCCATGGTGTACATAAGGTTCATTCTATCGATTGTCAGATTTGCATGCATCACTTGAATGCAGCCTTGAGTGCATTCAAGCATATTGGTTATTTTGACAGTtgcagaggtaaaaaaaaatattgtgggAGTCTTTGCAGACCGATTTTACTAAAATGTTTATGTAGAAAATgtgactgtaaaaaaaaaaacattgtcagTGCTTCTTTGCTACTTGTATCACCACCAGTTGTGCTGTGGTGTTTCTATGTACAGTAAAATGAAACTCCAAAAGATTGTGCACTCTTCTGTTATCCTCCATCTTTCATTCCTCCCAGGTCTGGAATTGTAGCAATTACCAACCCATTTGTGTAATTATTTTCATCATGAGTAATAAAGTTAGTTTTTTTTTGCACA
>XM_021603765.2
GTTTTTTCTCCCATGGAAGTATCCTCCCATTTTCCATAGGTTTCGCGAGGTTTGCATGGGCGGCAGTCTGCATTTCTCTGCAGGAAGAATTGAATATTTTTGGGATGAAATTCGTGTACAGTATTTGAATTTTTGGAGGGATGTCCAAGAAAAGGGGCAGAAAGCGGAGTAGCGGGGAGCTGAGTGATTCCACAGTGATGACCCCTGACCCCAACAGTCTCCTGGGAGTAAGAATACAGCACAATTGGAGGGAGAAGGGCAACCAGAGCAAATGGAAAGGCACTGTCTTGGACCGTCTCAGTGTCAACCCCTCACTATTTATGGTCAAGTACGATGGGTTTGACTGTGTCTACGGCATCGAGCTATTCAAGGACGAAAGGGTTTCTAATCTACAGGTCCTGACAGAGAAAGTTGTCAACAACAAGATCAAGGTTCCTCATGGGGCGGAGGAGTTGGTAGGCAAAGCGGTGGAACACCTATTTGagaaggaggatggagagaagaatGAGTGGCGAGGCATGGTCCTCTCCAGGGCTCCCATCATGACTAACTGGTATTACATCACCTATGAGAAGGACCCCGTGCTCTACATGTACCAGTTGTGGGACGACTACGCAGATGGAGATCTCAGGATCTTACCTGAAGCAGAAAATAAGCACTTGCTTCCGGCCGACCGAAAGCCCGGCGAGGAGACTGAGAGCTTAGTGGGGAAGCAGGTTGAGTATGTTACTGACAAAGGTGTGAAGCGAACAGGCCTGGTGATCTACCAAGTCCCTGCCAAGCCTTCTGTATACTACATCAAATACGACGATGACTTTCACATCCATGTCTACGACCTGGTCAAGACCACCTAGGACACTTGATTGCTCACTCCATTGCTTACTTTTCACgtatcctcctcactctctctccatctctcttaagGTCCTGGACGGTATAACAGTTACGCTTTATTATTCAGGAAGTGCAATCTTTTATTCCACATTTAAAACTAGTTCTATGGTATGCACAGCAGAACTGTAGCAATGCTATTGTAGGCCACTAGGAGGAGAGTGGGAACATGTACACTTGGAAGGACCTATTTAAACCTCCTCACTTCTTCAGTTACCCCATTTGGTTGTTGTGCTGCACAGTAGATTCACATCTCGGACAGTCCAGGAGTGCACCTTGCCCTACAATGACAGACTTACTGTAAAGTGCAATAACGACCGCGTTTGAATTGTCTCCCACATCCTGATGCTCAATTATCTTTATTCAAAGCTGAACTGAATTATATATTATAAAACTAATAGTTAAATCTGGCCCCGATAGCCATTCATATGTGGTCCTTGAATGACCAAACAGCAAGCATGATGTATAGGTGAATATTTGTAGAGACTAGTTTGAGCTGTAGTGTTCAGTGAAGCCTTTGAAGGAGAAATGCAATAAGCTGTGATGCCCCTGAACgtataatttttttgtttttaaataatgCCTTTATTAATAGGCAACTATGTTTGATTTATGTGTCAGTCAGTTCATAGACAATCATTCCTTGATGAACCCACAGTGCTATCATTGGCTTCATAGTACTGGGTTGCACTGGCCTAGGAGTACTGATGATTCAATTACTAGTTTGAACATCAAAACAATTATTCATAATGCTGAATCAAGACTTGTTAGAAACAAGGAATACAGGTCTTCATAAAGTTCGGGCAAGTTTTTCCTGACCAGACAAACCTGATTAATTTGTAGAGATTGGGAAAAGGCCTTAACAATACCTGACCAGGTTCAGAATCCCAACATCATCAGACTATGATTAGCTCAAGTGGAATAGAGGCAGTGCTTTACACTACATTCTGATCTTGAATAGAAAACAAACATAAAGTGCCTTCAGGCTGATCATGTCgccatactgtatatatttgctAACCGCTCACAATTTTATTCCATTTACTGTTAAGGCCACTATTTGGTCAGTATTAGTCAAAGTAAAAAATGCTTTAATGAAAAAGTGTCAAATGCTGCGTACCAGGTTTTTGCTATTGTCTGTTTGTATAAGAGGATATGTGCAATGTTTGGCAGTTAATGCAGTATAAGACTATTTCCTCCAATCGAACATCCATGACCGTTGATTAGTCtcattcaaatgttgatattgtaGGGTGCACTTTAAATTACTCACATAAATATGCTAAAGATTTGGCACATTGTCTTTTTCTGTCAAGATACTTTTTTTGTGCAAGAACAAGTGGCATATTGCAGCATCGGTATATCATAATGGTAAAAACGCATGGAGAAAAGAAAAGTTATAACACGCATACAGTATTTAATCTAACTTTTTTGTGTAGTGTATTGTAAATGTATGCTGTTGTGAATACTCCtgttatattgtaaatatcccaTTGAAATACCAGCTTTAAAGTCCATCTAGAATTCTCACCTAGAGAAATGCTGCAAAGACTGCATTCAAAAAGCCTGCAGCCTGGCTGGCTTCActttttaaacttattttaaaGACTTGGGAGCTACAGTACATAATGTAATCCAAGGAAGTCCAAAACGCAAATGTTTTGGCTAGAAGTATTTAAATTTAGTCTTCTGTCCTTAGTCTCACTCCagggcatacagtgcattcatttACAGTGCATTGGTCCATGGTGTACATAAGGTTCATTCTATCGATTGTCAGATTTGCATGCATCACTTGAATGCAGCCTTGAGTGCATTCAAGCATATTGGTTATTTTGACAGTtgcagaggtaaaaaaaaatattgtgggAGTCTTTGCAGACCGATTTTACTAAAATGTTTATGTAGAAAATgtgactgtaaaaaaaaaaacattgtcagTGCTTCTTTGCTACTTGTATCACCACCAGTTGTGCTGTGGTGTTTCTATGTACAGTAAAATGAAACTCCAAAAGATTGTGCACTCTTCTGTTATCCTCCATCTTTCATTCCTCCCAGGTCTGGAATTGTAGCAATTACCAACCCATTTGTGTAATTATTTTCATCATGAGTAATAAAGTTAGTTTTTTTTTGCACA

Function

NR:

description
spindlin-Z-like

GO:

id name namespace
GO:0007276 gamete generation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603764.2 False 3290 mRNA 0.41 5 62797704 62802340
XM_021603765.2 True 3028 mRNA 0.40 5 62797963 62802340

Neighbor

gene id symbol gene type direction distance location
LOC110524274 LOC106613755 coding upstream 1224 62791979 ~ 62796480 (+)
LOC110524272 LOC106613754 coding upstream 12127 62725130 ~ 62785594 (+)
LOC110524271 LOC106613753 coding upstream 50778 62689887 ~ 62746926 (+)
hcn2 LOC106613751 coding upstream 237153 62493156 ~ 62560551 (+)
bsg bsg coding upstream 306912 62476874 ~ 62490792 (+)
LOC110524276 LOC106613760 coding downstream 6581 62808921 ~ 62821203 (+)
LOC110524278 LOC106613761 coding downstream 83061 62885401 ~ 62892180 (+)
LOC110524284 LOC106613766 coding downstream 494743 63297083 ~ 63303403 (+)
LOC118964772 NA coding downstream 498105 63300445 ~ 63300512 (+)
LOC110524287 LOC106613768 coding downstream 512196 63314536 ~ 63319938 (+)
G425091 NA non-coding upstream 7000 62790336 ~ 62790704 (+)
G425090 NA non-coding upstream 8433 62789028 ~ 62789271 (+)
G425086 NA non-coding upstream 9292 62788213 ~ 62788412 (+)
G425085 NA non-coding upstream 9606 62786959 ~ 62788098 (+)
G425058 NA non-coding upstream 25435 62733477 ~ 62772269 (+)
G425097 NA non-coding downstream 10398 62812738 ~ 62812939 (+)
G425119 NA non-coding downstream 51687 62854027 ~ 62854240 (+)
G425136 NA non-coding downstream 93061 62895401 ~ 62900496 (+)
G425165 LOC106613762 non-coding downstream 131917 62934257 ~ 62940159 (+)
G425216 NA non-coding downstream 220330 63022670 ~ 63032502 (+)
LOC110524265 LOC106613745 other upstream 490767 62283054 ~ 62327772 (+)
G424079 NA other upstream 691832 62105523 ~ 62105872 (+)
G423922 NA other upstream 1075680 61721537 ~ 61722024 (+)
LOC110524226 LOC106573564 other upstream 2101799 60694220 ~ 60695905 (+)
G420634 NA other upstream 3853487 58942728 ~ 58944217 (+)
G425224 NA other downstream 242750 63045090 ~ 63051530 (+)
nfil3-4 LOC106614010 other downstream 874074 63676409 ~ 63684848 (+)
sac3d1 sac3d1 other downstream 1374688 64177028 ~ 64183138 (+)
LOC110522985 NA other downstream 1441262 64243153 ~ 64244790 (+)
G427476 NA other downstream 2189761 64992101 ~ 64997138 (+)

Expression


Co-expression Network