LOC110524282 (LOC106584262)


Basic Information

Item Value
gene id LOC110524282
gene name LOC106584262
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63257597 ~ 63260481 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603786.2
ATACgcgtggtggaggaggagagacaccTATACAGGAGGATACATTTGGATTCAGCTAAAAGTCAGCTCCACAGAGAAACTAAAAAGCACAGGTATGTTCAAAATGACATTTAGGCAACTTTTTCCCTCATCATGAATATCGCATCTCCTCCAATTGGTTTCTACTCCTGAGCATAACACGTCTCCAACATGCCATGCAGAGGGATTTGCGAATGAATGACTCAGCCATGCAACAGAATGACAGTGCACAGACCCTGGCACCAGAGGTTTGTGAGCAGGTGCTGGAGGATAATGCTGGACTGGGTTACGGTGGCTCTACTGGTAACCTGTCGCTGCGGTGCTGGCTATATTTCTTAAGCAAGGAATCTATCCTGGAACTGCAGGGCGATGGCTCCAGCATCACAGTGCGTGTGATGATAGCTCTGGTGTACTCCGTCGTGTGTGCACTGGGGCTAGTGGGGAACTCTCTGGCACTCTACCTGCTTCACTCACGCCACAGTCAGAAGCAGTCGTCCATCAACTGCTTTGTAATGGGCTTGGCTCTCACCGACCTGCAGTTTGTTCTCACACTCCCTTTTTGGGCTATTGACACGGCTCTGGACTTCCGCTGGCCCTTCGGCAAAGTAATGTGTAAGATCATCAGCTCCGTGACCGTCATGAACATGTACGCCAGCGTCTTCTTCCTGACTGCCATGAGTGTGGCACGGTACTACGCGGTGACCACGGCCCTCAAGATGCACAGCAGGCGGGCAGCGGCGGCTGGTGCCAAGTGGATCAGCCTGGGCATCTGGGTAGTGTCGCTGCTGGTCACCCTGCCCCATGCCATCTACTCCACCAGTGCCCAGCTGTACGACGAGGAGTTGTGTTTGGTGCGATTCTCTGAGTCGGGCAGCTGGGACCCTCAGCTGCTCCTGGGGCTGTACCAGCTACAGAAGGTACTGCTGGGCTTTCTCATCCCCTTGGTGGTCATCACTGTGTGTTACCTGCTGCTTCTGCGCTTCGTGCTGAGCCAACGCATCAGCGGAGCGACCAGCTCGGAGGGCTCGGAAGGCCGCCACAAGCACCGCTCCAAAGTCACCAAGTCGGTGGCCATCGTGGTGCTGTCCTTTTTTCTGTGCTGGCTGCCCAACCAGGCGCTGACACTGTGGGGCGCGCTGATTAAGTTTGACCTGGTGCACTTCAGCAACGCATATTACAACGCCCAGAACTACACCTTCCCTCTGACTGTATGTCTGGCTCACACCAACAGCTGCCTCAACCCTGTGTTGTACTGCATAATTCGCCGTGAGTACCGCACAGGCCTCAAAGAGCTGCTGCTGCGCGCCACACCCTCCCCAAGGAGCCTGGCCAACCTGCTGCCCCGCAAGGCCAAGGTGGCAGAGGCTCCCCCTGACATGGTGCTGGTCCAGATGGATGTTTGAGGCATTTCATGAAATGCGTTTGTTGTGATTGAGGGAACAGCACCATCACAAGGAATGCCCATTAGGATGTGCCCTATTTTCTTTCCCCCTACTCAGATTCTCTTTGCCAGATGTGTTTTTCATCTGTCTCCTCCGGGGCTTCTCTGCCTTCCCGTAATTTGCCATGAATATGTAACAAGTAGCACTCATGTCAGGGGTCTCAATGAGTTCAAACCATAATGCTTCACCTTCTGCTTCGTACCTGCCAGATAAGACACAAGTCGCCATTCCACCTATGATCTCCATCAATTATCCATTTGTTTTCAATCATTTGAATTGGGTAATGTGCACTCAACAGAACACACTTTCTGCCGCGTATTGTATTCACGAGATGATGAATAGATGAGACTGTCCATAGGATGCAAGAGTTTATTCAGACACACTAATGTCTGTGCAGGGTGTTATTGTCATGCAATTTAGTACCTTGTTATTGCATTTGTTCATGTCCTCCTATGCTAGAACTGTCCTTGGTAGGTGTATCGATCCTTTAAATCATCAAATAAAACAGGAACTCAATTATAATCTATTGATATGGTTCATTTGATATCATTTTGATTGGTGTTATTGTTATTACCAGAGCCATGTTGGCAAATGTCTCTCTCCAGGAAGCTTTGTTGTGTGCGCAAGCAACCGATTAGTAGAGTATTTTTTACtccaaataatatatatttttctgatATAGACAAATAAAGGAGTGTGGTGGGAACACATTGTATATGTGATAGAGCTGAATAGTTGATCAGTGGAACATACAGAGAGCAAGTTGTAGGTCTTACATACTGCTGTACGCAAGGTCAGGGTCTCTTAGTGTGTCCACTAGAACGTAAGAAAACTATTTTGATTTGAAGGAATAGAAAAGTTGCATTACATTGCAACAACAAGACGACCTTGCTTACAGTCTTTGCTTTCTCTGTCTGTTAAACGTGAGCTGCGCACACACACTGAGCCGCTGCTTTGAGCCGTACAAAGTGAATTTATTATGGGATATCATCCTCCTACCCGTTCTTATATCTATATTAATAATTCAGTTTGAaggaaatatatttaaaaaagtatGAAATAGTCGAAACCTTCAATGGAATGTGAACAAGTCTCTGTGAAATCATGTACTGTAAAGGTTATATTGCAAGAGCTACACGATTACTAATGTGATTCACCATTTTTTGTAATTGTGTTGCCTTGATCTCATTTGCTATATAAACTGTTTTAGTAAAGATTGAAACAAGATTTTAGTAAAATTGCAAGTGCATTATGTAGAACTAAGAAATAAACCAGTCAACTTGAACATCCTCTTTTGATGAATTGGGTCGTGTTTGAAATCAGAGCATATGGATGGGGATGTGGTATACacatgcaggatcttaatttgagccagttctctacagcaggaaaataatcctgcagcaacaggaaatgtgaattatt
>TU482444
GACCAGCTCGGAGGGCTCGGAAGGCCGCCACAAGCACCGCTCCAAAGTCACCAAGTCGGTGGCCATCGTGGTGCTGTCCTTTTTTCTGTGCTGGCTGCCCAACCAGGCGCTGACACTGTGGGGCGCGCTGATTAAGTTTGACCTGGTGCACTTCAGCAACGCATATTACAACGCCCAGAACTACACCTTCCCTCTGACTGTATGTCTGGCTCACACCAACAGCTGCCTCAACCCTGTGTTGTACTGCATAATTCGCCGTGAGTACCGCACAGGCCTCAAAGAGCTGCTGCTGCGCGCCACACCCTCCCCAAGGAGCCTGGCCAACCTGCTGCCCCGCAAGGCCAAGGTGGCAGAGGCTCCCCCTGACATGGTGCTGGTCCAGATGGATGTTTGAGGCATTTCATGAAATGCGTTTGTTGTGATTGAGGGAACAGCACCATCACAAGGAATGCCCATTAGGATGTGCCCTATTTTCTTTCCCCCTACTCAGATTCTCTTTGCCAGATGTGTTTTTCATCTGTCTCCTCCGGGGCTTCTCTGCCTTCCCGTAATTTGCCATGAATATGTAACAAGTAGCACTCATGTCAGGGGTCTCAATGAGTTCAAACCATAATGCTTCACCTTCTGCTTCGTACCTGCCAGATAAGACACAAGTCGCCATTCCACCTATGATCTCCATCAATTATCCATTTGTTTTCAATCATTTGAATTGGGTAATGTGCACTCAACAGAACACACTTTCTGCCGCGTATTGTATTCACGAGATGATGAATAGATGAGACTGTCCATAGGATGCAAGAGTTTATTCAGACACACTAATGTCTGTGCAGGGTGTTATTGTCATGCAATTTAGTACCTTGTTATTGCATTTGTTCATGTCCTCCTATGCTAGAACTGTCCTTGGTAGGTGTATCGATCCTTTAAATCATCAAATAAAACAGGAACTCAATTATAATCTATTGATATGGTTCATTTGATATCATTTTGATTGGTGTTATTGTTATTACCAGAGCCATGTTGGCAAATGTCTCTCTCCAGGAAGCTTTGTTGTGTGCGCAAGCAACCGATTAGTAGAGTATTTTTTACtccaaataatatatatttttctgatATAGACAAATAAAGGAGTGTGGTGGGAACACATTGTATATGTGATAGAGCTGAATAGTTGATCAGTGGAACATACAGAGAGCAAGTTGTAGGTCTTACATACTGCTGTACGCAAGGTCAGGGTCTCTTAGTGTGTCCACTAGAACGTAAGAAAACTATTTTGATTTGAAGGAATAGAAAAGTTGCATTACATTGCAACAACAAGACGACCTTGCTTACAGTCTTTGCTTTCTCTGTCTGTTAAACGTGAGCTGCGCACACACACTGAGCCGCTGCTTTGAGCCGTACAAAGTGAATTTATTATGGGATATCATCCTCCTACCCGTTCTTATATCTATATTAATAATTCAGTTTGAaggaaatatatttaaaaaagtatGAAATAGTCGAAACCTTCAATGGAATGTGAACAAGTCTCTGTGAAATCATGTACTGTAAAGGTTATATTGCAAGAGCTACACGATTACTAATGTGATTCACCATTTTTTGTAATTGTGTTGCCTTGATCTCATTTGCTATATAAACTGTTTTAGTAAAGATTGAAACAAGATTTTAGTAAAATTGCAAGTGCATTATGTAGAACTAAGAAATAAACCA
>TU482438
TTCCCTCTGACTGTATGTCTGGCTCACACCAACAGCTGCCTCAACCCTGTGTTGTACTGCATAATTCGCCGTGAGTACCGCACAGGCCTCAAAGAGCTGCTGCTGCGCGCCACACCCTCCCCAAGGAGCCTGGCCAACCTGCTGCCCCGCAAGGCCAAGGTGGCAGAGGCTCCCCCTGACATGGTGCTGGTCCAGATGGATGTTTGAGGCATTTCATGAAATGCGTTTGTTGTGATTGAGGGAACAGCACCATCACAAGGAATGCCCATTAGGATGTGCCCTATTTTCTTTCCCCCTACTCAGATTCTCTTTGCCAGATGTGTTTTTCATCTGTCTCCTCCGGGGCTTCTCTGCCTTCCCGTAATTTGCCATGAATATGTAACAAGTAGCACTCATGTCAGGGGTCTCAATGAGTTCAAACCATAATGCTTCACCTTCTGCTTCGTACCTGCCAGATAAGACACAAGTCGCCATTCCACCTATGATCTCCATCAATTATCCATTTGTTTTCAATCATTTGAATTGGGTAATGTGCACTCAACAGAACACACTTTCTGCCGCGTATTGTATTCACGAGATGATGAATAGATGAGACTGTCCATAGGATGCAAGAGTTTATTCAGACACACTAATGTCTGTGCAGGGTGTTATTGTCATGCAATTTAGTACCTTGTTATTGCATTTGTTCATGTCCTCCTATGCTAGAACTGTCCTTGGTAGGTGTATCGATCCTTTAAATCATCAAATAAAACAGGAACTCAATTATAATCTATTGATATGGTTCATTTGATATCATTTTGATTGGTGTTATTGTTATTACCAGAGCCATGTTGGCAAATGTCTCTCTCCAGGAAGCTTTGTTGTGTGCGCAAGCAACCGATTAGTAGAGTATTTTTTACtccaaataatatatatttttctgatATAGACAAATAAAGGAGTGTGGTGGGAACACATTGTATATGTGATAGAGCTGAATAGTTGATCAGTGGAACATACAGAGAGCAAGTTGTAGGTCTTACATACTGCTGTACGCAAGGTCAGGGTCTCTTAGTGTGTCCACTAGAACGTAAGAAAACTATTTTGATTTGAAGGAATAGAAAAGTTGCATTACATTGCAACAACAAGACGACCTTGCTTACAGTCTTTGCTTTCTCTGTCTGTTAAACGTGAGCTGCGCACACACACTGAGCCGCTGCTTTGAGCCGTACAAAGTGAATTTATTATGGGATATCATCCTCCTACCCG
>TU482440
GACCAGCTCGGAGGGCTCGGAAGGCCGCCACAAGCACCGCTCCAAAGTCACCAAGTCGGTGGCCATCGTGGTGCTGTCCTTTTTTCTGTGCTGGCTGCCCAACCAGGCGCTGACACTGTGGGGCGCGCTGATTAAGTTTGACCTGGTGCACTTCAGCAACGCATATTACAACGCCCAGAACTACACCTTCCCTCTGACTGTATGTCTGGCTCACACCAACAGCTGCCTCAACCCTGTGTTGTACTGCATAATTCGCCGTGAGTACCGCACAGGCCTCAAAGAGCTGCTGCTGCGCGCCACACCCTCCCCAAGGAGCCTGGCCAACCTGCTGCCCCGCAAGGCCAAGGTGGCAGAGGCTCCCCCTGACATGGTGCTGGTCCAGATGGATGTTTGAGGCATTTCATGAAATGCGTTTGTTGTGATTGAGGGAACAGCACCATCACAAGGAATGCCCATTAGGATGTGCCCTATTTTCTTTCCCCCTACTCAGATTCTCTTTGCCAGATGTGTTTTTCATCTGTCTCCTCCGGGGCTTCTCTGCCTTCCCGTAATTTGCCATGAATATGTAACAAGTAGCACTCATGTCAGGGGTCTCAATGAGTTCAAACCATAATGCTTCACCTTCTGCTTCGTACCTGCCAGATAAGACACAAGTCGCCATTCCACCTATGATCTCCATCAATTATCCATTTGTTTTCAATCATTTGAATTGGGTAATGTGCACTCAACAGAACACACTTTCTGCCGCGTATTGTATTCACGAGATGATGAATAGATGAGACTGTCCATAGGATGCAAGAGTTTATTCAGACACACTAATGTCTGTGCAGGGTGTTATTGTCATGCAATTTAGTACCTTGTTATTGCATTTGTTCATGTCCTCCTATGCTAGAACTGTCCTTGGTAGGTGTATCGATCCTTTAAATCATCAAATAAAACAGGAACTCAATTATAATCTATTGATATGGTTCATTTGATATCATTTTGATTGGTGTTATTGTTATTACCAGAGCCATGTTGGCAAATGTCTCTCTCCAGGAAGCTTTGTTGTGTGCGCAAGCAACCGATTAGTAGAGTATTTTTTACtccaaataatatatatttttctgatATAGACAAATAAAGGAGTGTGGTGGGAACACATTGTATATGTGATAGAGCTGAATAGTTGATCAGTGGAACATACAGAGAGCAAGTTGTAGGTCTTACATACTGCTGTACGCAAGGTCAGGGTCTCTTAGTGTGTCCACTAGAACGTAAGAAAACTATTTTGATTTGAAGGAATAGAAAAGTTGCATTACATTGCAACAACAAGACGACCTTGCTTACAGTCTTTGCTTTCTCTGTCTGTTAAACGTGAGCTGCGCACACACACTGAGCCGCTGCTTTGAGCCGTACAAAGTGAATTTATTATGGGATATCATCCTCCTACCCG
>TU482441
gaggaggagagacaccTATACAGGAGGATACATTTGGATTCAGCTAAAAGTCAGCTCCACAGAGAAACTAAAAAGCACAGGTATGTTCAAAATGACATTTAGGCAACTTTTTCCCTCATCATGAATATCGCATCTCCTCCAATTGGTTTCTACTCCTGAGCATAACACGTCTCCAACATGCCATGCAGAGGGATTTGCGAATGAATGACTCAGCCATGCAACAGAATGACAGTGCACAGACCCTGGCACCAGAGGTTTGTGAGCAGGTGCTGGAGGATAATGCTGGACTGGGTTACGGTGGCTCTACTGGTAACCTGTCGCTGCGGTGCTGGCTATATTTCTTAAGCAAGGAATCTATCCTGGAACTGCAGGGCGATGGCTCCAGCATCACAGTGCGTGTGATGATAGCTCTGGTGTACTCCGTCGTGTGTGCACTGGGGCTAGTGGGGAACTCTCTGGCACTCTACCTGCTTCACTCACGCCACAGTCAGAAGCAGTCGTCCATCAACTGCTTTGTAATGGGCTTGGCTCTCACCGACCTGCAGTTTGTTCTCACACTCCCTTTTTGGGCTATTGACACGGCTCTGGACTTCCGCTGGCCCTTCGGCAAAGTAATGTGTAAGATCATCAGCTCCGTGACCGTCATGAACATGTACGCCAGCGTCTTCTTCCTGACTGCCATGAGTGTGGCACGGTACTACGCGGTGACCACGGCCCTCAAGATGCACAGCAGGCGGGCAGCGGCGGCTGGTGCCAAGTGGATCAGCCTGGGCATCTGGGTAGTGTCGCTGCTGGTCACCCTGCCCCATGCCATCTACTCCA

Function

NR:

description
relaxin-3 receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603786.2 False 2885 mRNA 0.47 1 63257597 63260481
TU482444 False 1707 lncRNA 0.43 1 63257748 63259454
TU482438 False 1248 lncRNA 0.43 1 63258020 63259267
TU482440 False 1435 lncRNA 0.45 1 63258020 63259454
TU482441 True 822 TUCP 0.53 1 63259648 63260469

Neighbor

gene id symbol gene type direction distance location
LOC110524279 LOC106613762 coding downstream 42694 62919578 ~ 63214903 (-)
LOC110524277 LOC106613757 coding downstream 449421 62803832 ~ 62808176 (-)
LOC118964634 NA coding downstream 460357 62796617 ~ 62797240 (-)
LOC110524270 LOC106613752 coding downstream 577382 62586238 ~ 62680215 (-)
LOC110524266 LOC106613746 coding downstream 815803 62328839 ~ 62441794 (-)
LOC110524283 LOC106613765 coding upstream 14150 63274631 ~ 63282648 (-)
btbd2a LOC106613767 coding upstream 43283 63303764 ~ 63314291 (-)
si:dkey-110c1.10 LOC106613769 coding upstream 120318 63380799 ~ 63402249 (-)
LOC110524293 LOC106613771 coding upstream 141965 63402446 ~ 63409451 (-)
LOC110524290 LOC106613772 coding upstream 157483 63417964 ~ 63443429 (-)
G425781 NA non-coding downstream 73137 63162393 ~ 63184460 (-)
G425751 NA non-coding downstream 137909 63109801 ~ 63119688 (-)
G425624 NA non-coding downstream 190403 63037824 ~ 63067194 (-)
G425713 NA non-coding downstream 227212 63027607 ~ 63030385 (-)
G425689 NA non-coding downstream 281546 62975015 ~ 62976051 (-)
G425870 NA non-coding upstream 9020 63269501 ~ 63269818 (-)
G425878 NA non-coding upstream 26591 63287072 ~ 63287395 (-)
G425881 NA non-coding upstream 29237 63289718 ~ 63290012 (-)
G425820 NA non-coding upstream 29965 63290446 ~ 63290777 (-)
G425886 NA non-coding upstream 61990 63322471 ~ 63323012 (-)
G425647 NA other downstream 357094 62894659 ~ 62900503 (-)
G425612 NA other downstream 407350 62850004 ~ 62850247 (-)
G424678 NA other downstream 1256288 61998526 ~ 62001309 (-)
G424649 NA other downstream 1330175 61888198 ~ 61927422 (-)
G425810 LOC106613766 other upstream 40443 63300924 ~ 63303394 (-)
LOC110522986 LOC106613472 other upstream 1023487 64283744 ~ 64297376 (-)
G427287 NA other upstream 1306200 64566681 ~ 64568380 (-)
LOC110524330 LOC106613802 other upstream 1441393 64701867 ~ 64810664 (-)
LOC110524332 LOC106613803 other upstream 1644564 64903039 ~ 64911196 (-)
LOC110524282 LOC106584262 other upstream 194 63257597 ~ 63260481 (-)

Expression


Co-expression Network