LOC110524283 (LOC106613765)


Basic Information

Item Value
gene id LOC110524283
gene name LOC106613765
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63274631 ~ 63282648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603787.2
ACCTTGGACCTCAGAACACGAGCAGTGAGATACAGTAGAGACACACGGTCATCTAGAACAGAGCCCCTTCACAACAAAGGAAACTGACCATTTTACTGGATTTATCTTGTTTTGGGGAGTTCCTCCCTGTTCCACCCTAGTTCTGAAATGATGGACCACTACTCAGACCAGGGTTGCGACGGGATTGAGCTGCTTGATTTGCTGTTTGATCAGAACGATGGCATCCTCCGTCACGAGGAGATGGGGCACCATGGGAACCATGCCTGGCCCATTCACAAGCCAAACATGCTGCGTCCAACAAAGCTACAGGGCGAGGACTTCTTGAACACCCTCCTGAGTGACTCGGTTTCGGGGTCACCCCTATGGTCTCCCTCTCCCAGTGACAGTGGAATCAGTGAGGACCCCCACTCCGATCAGATGGACAGCCCCAAGCGCCCTGAGAGTCCTCCCACAGAGCCCCATTTCCTCCCCCCTCAGCCACACACCAGGGCCGCCCTGGACACAGACTTCTCCATTAATATCAATGGCTGGGACTCAGGCTTCTACCCAGGAAGGACTGATGGGACAAAGTGTTCCTCTGATGTACACAAAACCCAGCTGACCTCTAGCTTTCCCCTCACTGTCAAGGAGCTACTGCTCTCTGGTACATCTGAGCTGCCCCCACAGCAGTCCCAGCAGTCCTTCCAAGAGTTGATTCTCAATGAGGACGAGAAAAAGCTGCTGGCCAAGGAGGGGGTGACTCTGCCTAGCCAACTACCCCTCACCAAGTATGAGGAGAGGATTCTGAAGAAAATTCGCAGAAAAATCCGGAACAAGCAGTCGGCCCAAGAGAGCAGGAAGAAGAAAAAGGAATATATTGATGGTCTGGAGAGCAGGATGACTGCCTGCAACACACACAACCAGGAgctgcagaggaaggtgttccaGTTGGAGAAATGCAACACGTCTCTGATGGAGCAGCTGCGTAGGATGCAGACTCTGGTAATGAACGGCTCTAAAAAGGCCGCCCAGGCTGGGACCTGTGTTCTGGTGCTgctcctgtctttctccctcatCCTCTTCCCAAACCTGAAACCTTTCTCCGAGCCCAAGGTCAGCCAAGGAGGGGACTTCAGCCCAGTGAGAGTACAGTCACGATCCCTGCACAACCTCCAGTCTTCCAGAGTGCTGCATGTCATTGACCAGCCGTATCATACTGCCGACGACGAGCCCAAGTCTCCGCACCACCATTTCCCAGGAGACCAGGGGGTAAATGAGATGACCTCTCTGCTGGGTAAGCTGGGCACCGGTGACGGCAGCCAGGGGCTGTCCAATCTCGACCCCATGTCTCCCAACAATAGCCTGGATGAGCAAGCCCATTTCCACGGGGACCCCATTACCGGCCACATAGCTACAGTGACCTTGAATCCACACCGCAGAGCCACACTACGCCCACATGCTGATGACATGTGATTGGATAGAGTTTTCCCAGCAGGATTCTGCTCTGCTCCCATCTCCACACATTTCACATGATGAAACATAGAGTAGCACACACCTAAGCCTCTTTTTTACACTGTTAGGGTAATAAGAAATAAATCATTCCTGCTTTTGCCtcttatattttatgtatatgcttttttcttgtttgttacactgttttgtattgttttcAAGATGAATTGAGCATCTCTTGCCCCTCCATGACTGTTTTAACATTGACAGTGTAGATTTGTGTATTTTGAGAAAGGTAATAATTCTTGTTTTTCATAACTGTGATGGTGTGTACAATTTTGAGCTTTTACAAACCATTTTGAGATTCATTTTGCATGTACACTACGAAGCAATAACTTTATTGACAATCTTGCTACAAATTAATAAAACTGTCTCAAACTTTA

Function

NR:

description
cyclic AMP-responsive element-binding protein 3-like protein 3-B

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603787.2 True 1874 mRNA 0.50 10 63274631 63282648

Neighbor

gene id symbol gene type direction distance location
LOC110524282 LOC106584262 coding downstream 14150 63257597 ~ 63260481 (-)
LOC110524279 LOC106613762 coding downstream 59728 62919578 ~ 63214903 (-)
LOC110524277 LOC106613757 coding downstream 466455 62803832 ~ 62808176 (-)
LOC118964634 NA coding downstream 477391 62796617 ~ 62797240 (-)
LOC110524270 LOC106613752 coding downstream 594416 62586238 ~ 62680215 (-)
btbd2a LOC106613767 coding upstream 21116 63303764 ~ 63314291 (-)
si:dkey-110c1.10 LOC106613769 coding upstream 98151 63380799 ~ 63402249 (-)
LOC110524293 LOC106613771 coding upstream 119798 63402446 ~ 63409451 (-)
LOC110524290 LOC106613772 coding upstream 135316 63417964 ~ 63443429 (-)
LOC110524292 LOC106613773 coding upstream 179856 63462504 ~ 63491605 (-)
G425870 NA non-coding downstream 4813 63269501 ~ 63269818 (-)
G425781 NA non-coding downstream 90171 63162393 ~ 63184460 (-)
G425751 NA non-coding downstream 154943 63109801 ~ 63119688 (-)
G425624 NA non-coding downstream 207437 63037824 ~ 63067194 (-)
G425878 NA non-coding upstream 4424 63287072 ~ 63287395 (-)
G425881 NA non-coding upstream 7070 63289718 ~ 63290012 (-)
G425820 NA non-coding upstream 7798 63290446 ~ 63290777 (-)
G425886 NA non-coding upstream 39823 63322471 ~ 63323012 (-)
G425892 NA non-coding upstream 50410 63333058 ~ 63333575 (-)
G425647 NA other downstream 374128 62894659 ~ 62900503 (-)
G425612 NA other downstream 424384 62850004 ~ 62850247 (-)
G424678 NA other downstream 1273322 61998526 ~ 62001309 (-)
G425810 LOC106613766 other upstream 18276 63300924 ~ 63303394 (-)
LOC110522986 LOC106613472 other upstream 1001320 64283744 ~ 64297376 (-)
G427287 NA other upstream 1284033 64566681 ~ 64568380 (-)
LOC110524330 LOC106613802 other upstream 1419226 64701867 ~ 64810664 (-)
LOC110524332 LOC106613803 other upstream 1622397 64903039 ~ 64911196 (-)

Expression


Co-expression Network