LOC110524284 (LOC106613766)


Basic Information

Item Value
gene id LOC110524284
gene name LOC106613766
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63297083 ~ 63303403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603788.2
cGTCAAACCTCATCGAAGAAGAAAAGCGGATGTGTACAACAGTCAGCAGTCTATTTTTGCACCTAGGTGTGGCGCACAAGCGATGACTCTTTGCTTGATGTCTGGATGTTGATTCGGCCTAATTTCGTATCAGTATAAATATTTCGTCAAAGCTTGTAGGCCCACCAGCGTAAAATGCTAGCTACAAATGTTAAAAGCAGAGAAGTTGTCTCAAAAAGCCAAAGTACCCCGCTTTGTACAGAGCGTGTCACGGTACGTCGTCACGAAGCACGCCAGCAGTATAAAACCGTTCCTGTTGACGTAACCCAGTCTCTTCCCTGCCTATGCCCTCGTGAGGTGGGCAGTGTCATATCGTGTGTCTTCGTTTCCACTAAGCGAATCCACAACCATCCGTCAAAATGGTGAACTTTACCGTAGACCAAATCCGTGCCATCATGGACAAGAAGTCCAACATCCGTAACATGTCTGTGATTGCGCACGTCGACCATGGTAAGTCCACCCTGACAGACTCGCTGGTGTCGAAGGCTGGTATCATCGCAGGTTCCCGCGCCGGAGAGACCCGCTTCACCGACACACGAAAAGACGAGCAGGAGCGCTGCATTACCATCAAGTCAACCGCCATCTCAATGTACTACGAGCTCTCGGAGAACGACATGGCCTTCATCAAGCAGTGCAAAGATGGTGTTGGGTTTCTCATCAATCTGATTGACTCTCCAGGCCACGTTGACTTCTCCTCTGAGGTCACAGCCGCTCTCCGTGTCACTGACGGGGCCCTGGTTGTTGTGGACTGCGTGTCAGgtgtgtgtgtgcagaccgAGACTGTGCTCAGGCAGGCCATTGCAGAGCGTATCAAGCCTGTGCTGATGATGAATAAGATGGACCGAGCCCTGCTGGAGTTGCAGCTGGAGCCAGAGGATCTGTTCCAGACCTTCCAGCGCATCGTGGAGAATGTGAACGTCATCATTGCCACCTACGGAGAGGATGAGGGTGGTCCCATGGGCGCCATCATGATTGACCCAGTCATTGGAACTGTTGGCTTTGGGTCCGGACTTCACGGATGGGCCTTCACCCTGAAGCAGTTTGCTGAGATGTACGTGATGAAGTTTGCTGCCAAGGGTGATGCCCAACTAGGACCAGCAGAGCGCTGCAAGAAGGTGGAGGACATGATGAAGAAGCTGTGGGGTGAAAGGTTTTTTGACCCTGCCACTGGCAAGTTCAGCAAGTCGGCCACCGGACCTGATGGAAAGAAGCTCCCGCGTACGTTTTCTCAGCTTGTGCTGGACCCCATCTTCAAGGTTTTCGATGCCATCATGAACTTCAAGAAAGAGGAAACGGCCAAGCTGATTGAGAAGCTGGACATCAAGCTGGACAATGAGGACAAGGAGAAGGAGGGGAAGCCCCTGCTGAAGGCTGTGATGCGCCGCTGGCTGCCAGCTGGAGAGGCCCTGCTCCAGATGATCACCATCCACCTGCCCTCCCCTGTCACCGCCCAGAAGTACCGCTGTGAGCTGCTTTATGAAGGACCTGGTGATGATGAAGCTGCCATGGGTATCAAGAACTGTGACCCCAAGGCTCCTTTGATGATGTACATCTCCAAGATGGTGCCCACCACCGACAAGGGTCGCTTCTATGCCTTTGGCCGTGTCTTCTCCGGCTGCGTGTCCTCTGGCCAGAAGGTGCGCATTATGGGACCAAACTTCACCCCTGGAAAGAAGGAGGACCTCTACCTCAAACCAATTCAGAGGACCATTCTGATGATGGGACGTTACATTGAACCTATCGAGGACGTGCCATGCGGGAACATTGTTGGGCTGGTTGGAGTGGACCAGTACCTGGTGAAGACCGGTACCATCACTACCTTTGAGCAGGCCCATAACATGAGGGTGATGAAGTTCAGCGTCAGCCCTGTGGTGAGAGTGGCTGTCGAGGCCAAGAACCCTGCTGATCTGCCCAAGCTGGTGGAGGGCCTGAAGCGTCTGGCCAAGTCTGACCCCATGGTGCAGTGTATCATTGAGGAGTCTGGAGAGCACATCATCGCTGGAGCTGGCGAGCTGCATCTGGAGATCtgcctgaaggatctggaggagGACCATGCCTGCATTCCACTGAAGaaATCAGATCCGGTGGTTTCCTACAGGGAGACTGTGTCTGAGGAGTCTGACCAGATGTGCCTATCCAAGTCCCCAAACAAACACAACCGTCTGTACATGAAGGCCCGTCCCTTCCCTGACGGCCTGGCTGAGGACATCGAGAAGGGCGACGTCAGCGCCAGACAAGAGCTGAAGATCCGTGCCCGTTTCCTGGCCGACAAGTACGAGTGGGATGTGTCTGAGGCCCGTAAGATCTGGTGCTTCGGCCCTGATGGTACTGGCCCCAACCTGCTGATGGACGTGACCAAGGGAGTCCAGTACCTGAACGAGATCAAGGACAGCGTGGTGGCCGGCTTCCAATGGGCCGTTAAGGAGGGTGCCCTGTGTGAAGAGAACATGCGTGCTGTCCGCTTTGATGTCCATGACGTGACCCTCCACACAGATGCTATCCACCGTGGTGGTGGTCAGATCATTCCCACAGCCCGCAGAGTGCTGTATGCCTGCCAACTTACAGCCCAGCCAAGACTCATGGAGCCTGTCTACCTGGTGGAGATTCAGTGTCCTGAGCAGGTGGTAGGAGGCATCTACGGTGTGTTGAACCGGAAGCGCGGTCACGTGTTCGAGGAGTCCCAGGTCATGGGGACCCCCATGTTCATCGTCAAGGCTTACCTGCCTGTCAACGAGTCTTTCGGTTTCACAGCTGACCTGCGTTCCAACACTGGTGGCCAAGCCTTCCCCCAGTGTGTGTTTGACCACTGGCAGATCCTCCAGGGAGATCCACAGGACTCTACCACCAAAATCTCTCAGATTGTGGCTGACACCCGTAAACGTAAGGGGCTCAAGGAGGGCATTCCTGCATTGGACAACTACCTGGACAAATTGTAAAAGGCTACCCTCTCATTCCCCTGCCTCATTCCCCCCCTTCCAATACTGAGGAACAGGACTGTACAGATCACCATGAGCACTAACATTTGCCAAAAGAAAAGTCAAGACCTTGTCAAGAATTTATGAATTGTAAACCATATtaaaaatggaaaataaaaa
>XM_021603789.2
GTGAACTTTACCGTAGACCAAATCCGTGCCATCATGGACAAGAAGTCCAACATCCGTAACATGTCTGTGATTGCGCACGTCGACCATGGTAAGTCCACCCTGACAGACTCGCTGGTGTCGAAGGCTGGTATCATCGCAGGTTCCCGCGCCGGAGAGACCCGCTTCACCGACACACGAAAAGACGAGCAGGAGCGCTGCATTACCATCAAGTCAACCGCCATCTCAATGTACTACGAGCTCTCGGAGAACGACATGGCCTTCATCAAGCAGTGCAAAGATGGTGTTGGGTTTCTCATCAATCTGATTGACTCTCCAGGCCACGTTGACTTCTCCTCTGAGGTCACAGCCGCTCTCCGTGTCACTGACGGGGCCCTGGTTGTTGTGGACTGCGTGTCAGACATCTGTCATACAGGATGTCATATTGATGCTAGGTTCCGTGATTATGAGgtgtgtgtgtgcagaccgAGACTGTGCTCAGGCAGGCCATTGCAGAGCGTATCAAGCCTGTGCTGATGATGAATAAGATGGACCGAGCCCTGCTGGAGTTGCAGCTGGAGCCAGAGGATCTGTTCCAGACCTTCCAGCGCATCGTGGAGAATGTGAACGTCATCATTGCCACCTACGGAGAGGATGAGGGTGGTCCCATGGGCGCCATCATGATTGACCCAGTCATTGGAACTGTTGGCTTTGGGTCCGGACTTCACGGATGGGCCTTCACCCTGAAGCAGTTTGCTGAGATGTACGTGATGAAGTTTGCTGCCAAGGGTGATGCCCAACTAGGACCAGCAGAGCGCTGCAAGAAGGTGGAGGACATGATGAAGAAGCTGTGGGGTGAAAGGTTTTTTGACCCTGCCACTGGCAAGTTCAGCAAGTCGGCCACCGGACCTGATGGAAAGAAGCTCCCGCGTACGTTTTCTCAGCTTGTGCTGGACCCCATCTTCAAGGTTTTCGATGCCATCATGAACTTCAAGAAAGAGGAAACGGCCAAGCTGATTGAGAAGCTGGACATCAAGCTGGACAATGAGGACAAGGAGAAGGAGGGGAAGCCCCTGCTGAAGGCTGTGATGCGCCGCTGGCTGCCAGCTGGAGAGGCCCTGCTCCAGATGATCACCATCCACCTGCCCTCCCCTGTCACCGCCCAGAAGTACCGCTGTGAGCTGCTTTATGAAGGACCTGGTGATGATGAAGCTGCCATGGGTATCAAGAACTGTGACCCCAAGGCTCCTTTGATGATGTACATCTCCAAGATGGTGCCCACCACCGACAAGGGTCGCTTCTATGCCTTTGGCCGTGTCTTCTCCGGCTGCGTGTCCTCTGGCCAGAAGGTGCGCATTATGGGACCAAACTTCACCCCTGGAAAGAAGGAGGACCTCTACCTCAAACCAATTCAGAGGACCATTCTGATGATGGGACGTTACATTGAACCTATCGAGGACGTGCCATGCGGGAACATTGTTGGGCTGGTTGGAGTGGACCAGTACCTGGTGAAGACCGGTACCATCACTACCTTTGAGCAGGCCCATAACATGAGGGTGATGAAGTTCAGCGTCAGCCCTGTGGTGAGAGTGGCTGTCGAGGCCAAGAACCCTGCTGATCTGCCCAAGCTGGTGGAGGGCCTGAAGCGTCTGGCCAAGTCTGACCCCATGGTGCAGTGTATCATTGAGGAGTCTGGAGAGCACATCATCGCTGGAGCTGGCGAGCTGCATCTGGAGATCtgcctgaaggatctggaggagGACCATGCCTGCATTCCACTGAAGaaATCAGATCCGGTGGTTTCCTACAGGGAGACTGTGTCTGAGGAGTCTGACCAGATGTGCCTATCCAAGTCCCCAAACAAACACAACCGTCTGTACATGAAGGCCCGTCCCTTCCCTGACGGCCTGGCTGAGGACATCGAGAAGGGCGACGTCAGCGCCAGACAAGAGCTGAAGATCCGTGCCCGTTTCCTGGCCGACAAGTACGAGTGGGATGTGTCTGAGGCCCGTAAGATCTGGTGCTTCGGCCCTGATGGTACTGGCCCCAACCTGCTGATGGACGTGACCAAGGGAGTCCAGTACCTGAACGAGATCAAGGACAGCGTGGTGGCCGGCTTCCAATGGGCCGTTAAGGAGGGTGCCCTGTGTGAAGAGAACATGCGTGCTGTCCGCTTTGATGTCCATGACGTGACCCTCCACACAGATGCTATCCACCGTGGTGGTGGTCAGATCATTCCCACAGCCCGCAGAGTGCTGTATGCCTGCCAACTTACAGCCCAGCCAAGACTCATGGAGCCTGTCTACCTGGTGGAGATTCAGTGTCCTGAGCAGGTGGTAGGAGGCATCTACGGTGTGTTGAACCGGAAGCGCGGTCACGTGTTCGAGGAGTCCCAGGTCATGGGGACCCCCATGTTCATCGTCAAGGCTTACCTGCCTGTCAACGAGTCTTTCGGTTTCACAGCTGACCTGCGTTCCAACACTGGTGGCCAAGCCTTCCCCCAGTGTGTGTTTGACCACTGGCAGATCCTCCAGGGAGATCCACAGGACTCTACCACCAAAATCTCTCAGATTGTGGCTGACACCCGTAAACGTAAGGGGCTCAAGGAGGGCATTCCTGCATTGGACAACTACCTGGACAAATTGTAA

Function

NR:

description
elongation factor 2-like isoform X1

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03234 EEF2; elongation factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603788.2 False 3134 mRNA 0.54 13 63297083 63303403
XM_021603789.2 True 2624 mRNA 0.55 13 63298730 63303244

Neighbor

gene id symbol gene type direction distance location
LOC110524278 LOC106613761 coding upstream 404903 62885401 ~ 62892180 (+)
LOC110524276 LOC106613760 coding upstream 475880 62808921 ~ 62821203 (+)
LOC110524275 LOC105011538 coding upstream 494743 62797704 ~ 62802340 (+)
LOC110524274 LOC106613755 coding upstream 500603 62791979 ~ 62796480 (+)
LOC110524272 LOC106613754 coding upstream 511506 62725130 ~ 62785594 (+)
LOC110524287 LOC106613768 coding downstream 11133 63314536 ~ 63319938 (+)
unc13a LOC106613770 coding downstream 19136 63322539 ~ 63376215 (+)
foxq2 LOC106614005 coding downstream 251235 63554638 ~ 63557123 (+)
onecut3a LOC106613776 coding downstream 310494 63613897 ~ 63637179 (+)
si:dkey-172o19.2 LOC106614009 coding downstream 366798 63670201 ~ 63672004 (+)
G425359 NA non-coding upstream 40327 63256536 ~ 63256756 (+)
G425354 NA non-coding upstream 45254 63251503 ~ 63251829 (+)
G425259 NA non-coding upstream 177708 63109063 ~ 63119375 (+)
G425260 NA non-coding upstream 183231 63110822 ~ 63113852 (+)
G425218 NA non-coding upstream 226066 63034813 ~ 63071017 (+)
G425308 NA non-coding downstream 18375 63321778 ~ 63322263 (+)
G425385 NA non-coding downstream 73276 63376679 ~ 63378116 (+)
G425415 NA non-coding downstream 86647 63390050 ~ 63392234 (+)
G425431 NA non-coding downstream 106410 63409813 ~ 63417222 (+)
G425387 NA non-coding downstream 127414 63430817 ~ 63431584 (+)
G425224 NA other upstream 245553 63045090 ~ 63051530 (+)
LOC110524265 LOC106613745 other upstream 990146 62283054 ~ 62327772 (+)
G424079 NA other upstream 1191211 62105523 ~ 62105872 (+)
G423922 NA other upstream 1575059 61721537 ~ 61722024 (+)
LOC110524226 LOC106573564 other upstream 2601178 60694220 ~ 60695905 (+)
nfil3-4 LOC106614010 other downstream 373011 63676409 ~ 63684848 (+)
sac3d1 sac3d1 other downstream 873625 64177028 ~ 64183138 (+)
LOC110522985 NA other downstream 940199 64243153 ~ 64244790 (+)
G427476 NA other downstream 1688698 64992101 ~ 64997138 (+)
LOC110524338 LOC106584398 other downstream 1721312 65024444 ~ 65028828 (+)

Expression


Co-expression Network