onecut3a (LOC106613776)


Basic Information

Item Value
gene id onecut3a
gene name LOC106613776
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63613897 ~ 63637179 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603820.2
TGGAATAGGTTACAAACAAGCAGGCACCATACCAGAAGTGTGAGCAGTGGTTGGTGGCACAGCTCTTGTCGCGGGCAACTGATCGCTtgaaatcatgctggattgactgAAGAGGCTACTACAATCAATGGCTTGGCTTTGAAATCGTTAACATTTTATTGGAAAGGAgtgtgtgagacagagggagagggagagcgagggaacaAGAGAGTGCGCacgagtgagagaggggagagagaggtgtaaataAAGATTATTTCAACAATGGAACTTACAATGGAAAACATTGGAAATCTACACGGCGTATCTCATTCTCATCAAACGGGTGACTTAATGAACTCTCCGCACCACGCACGGCAGTCCTTGGCGTCGCATCGGAACTTGGTGTCGCACGGACGGTCAGCCATGGTGTCCAGTATGGCCTCAATATTAGAGGGAGCTGGGGAGTATCGCACAGACCATGCATTGTCCGGTCCCTTGCACCCCGCCATGACTATGTCCTGCGACTCCGGGATGACCATGAGCAGCACTTACACTACGCTGACACCACTGCAGCACCTGCCTCCCATAGCCACCGTCTCGGATAAATTTCACCATCATCCTCACCCGCACGCTCACCACCATCCGGCCCATCAGCGTCTCACCGCCGGTAACGTCAGCGGCAGCTTCACGCTCATGCGGGACGACAGGAGCCTTGCCTCAATGAGCAACCTCTACGGCCACTACCCTAAAGACATGTCCGGCATGGGCCAGccactgtcccctctctccaACGGCCTCGGGTCTTTGCACAACTCGCAGCAGACTCTTGGCGCCTATGGTCAGGGAGCCCACCTCTCCAACGACAAGATGCTCTCTTCGGGAGGCTTCGAGTCTCACGCAGCGATGCTGTCCCGGAGCGAGGAACACCTGGCCCGGGGATTTGGGGGCCACGGGGCCGGGATCATGTCATCCCTGAACGGTATGCACCATCACAGCCATCCGCACTCTCAGGCTAACGGATCCATGCTCTCTGACCGGGAGAGGCAGACGGCGGGGGGCGGGCAGGGAGGTGGGTCCGGGCAGGTGGAAGAAATAAACACCAAGGAGGTGGCACAACGAATAACGGCGGAACTCAAGCGCTACAGCATTCCCCAGGCCATCTTCGCCCAGCGGATCTTGTGTCGGTCCCAGGGAACCCTGTCTGACCTGCTGAGGAACCCTAAGCCCTGGAGTAAACTCAAGTCTGGCCGGGAAACCTTCCGGAGGATGTGGAAGTGGCTGCAAGAACCGGAGTTCCAGAGAATGTCGGCACTCAGACTAGCAGCCTGCAAGCGCAAGGAGCAGGAGCAGCACAAAGACTGCAACATGGCGCCCAAAAAGCAGCGGCTGGTCTTCACAGACCTGCAGCGCCGCACACTCATCGCCATCTTCAAGGAGAACAAGCGCCCATCCAAGGAGATGCAGATCACCATCTCCCAGCAGCTGGGCCTGGAGCTCAACACCGTCAGCAACTTCTTTATGAATGCCCGGCGCCGCTGCGTGGATCGCTGGCACGACGAACACGGCACCAGCCCCGGCCAGCCGGGCACCTCGGCCAACACCTTCTCCAAAGCCTGAGAGGCCCGGGGGGAGCCACGGGGTGGCATGGGGATGGGAAGGTAGTACCTCCTGTAGCCCACTCCGTTCCCAATAACCATGTTGATGCCTCATTCCTTCCATGCAACCACCTCTTGGTCAGTCGTAACTTTAACCACAACGATCTGAAAGTCTCACCACTGGACTGTTATGAAGCAAGTGAAACGTAAAGGTAACATGTAGTCAAGTCCACACAAGGACAATCATCTTTTTTTTGATTGAATTGGGTTTCTGTTGATGGTGTCAGTCCATCTACACTACAGGCACCATGATACGTTGCTATGTTTAAACGATCTCAACATCAAGCCTCAGTCAGCCTCCCTATCCAGGTAGTTGCTGCTGAATCCCTCCAAGCTCTCCCTTTTGTGTCTGCTATGAGTCTGCTCAGCCCCATTCTCTACTCACATTTCTCAACAAAGACAAAAGAACATCAATAAACCTGacagcacacagccctgttatcTAACCCAGTCCTCTGCGCAAGACCATCCTAGAGAAAACAACACAACCCCATGAAAAAACAAAAGCTCGACcagtcttctcctccctctctccactccttctTTGCCAAAGGTATTCCCTGATGGCCAGCCATTTCAGCGAGCCACTCGGATCATACGCCGGCAAACTAATGAATTGAAAAATGAATCGAtgcagacagggagagggagcaggGCCTTGACCCTTCCTGAAGGTGAAACAGAAGACGCTTGGCAGTAAAGATACTCAGGTCTGCCCGGCTGCCCAGGTCTATATTTTTGCACAGATGTTGGAGGCCTGCAGGGAGACTGTCGTTGCTTTGGAGAAGCAGAAGCGTCTGTGTTTGTGACCATCGGGGAGGAGATACGTCTGGACATGCTCTTTGTTCAGGAGGGAGCTGCTTTTCACTGATCAATACAGAAACCAAGCAACAACACGGCCAGGCAGGCGTCCAGCCAACTGTATTACAGCTGCTGCAGAAAAGAATGTAAGAAGAGCACATGGGGAACTCAATGGAGGTGGCGACACAATGGCCTCACCCGGAGGCAGCGTCCAGTCTACTCTGCACTGAAGGTGCCCTAGTGCCCCCTGCTGGTTATAGGAGAAGCTGCAGACCGCAGTCCTCTTAGGAGAAGCTTCTCAGTGTGTTccagggctggggagagagaggccaTGGCACAACATTTTCAGGCCCTCGCACCTCTCTGAAGGCAGATCAATAGAGAGCCATTATCCTATTGTTGTTCCTCATCCAACAAGGACTGGTGAAGTAGGAGGAGGGGATGGTTCAACCAGCCGCCTATACACTGGGAAAAAGAAGAGGCAGGTTTTTAGTAAACACTCCAAATTCGTTACCTTGATAACACTCACCAAGCAAATAGACTACCTTGTGTCACAACATACACGTCAGGTTATTGAAAAGATACACTCAGAAACACATACAGTTGATATAGAGATATGTCTCAGTTTCATTTAGTGGACAGAGGGGTAATGATGGATGCAGAAACATTCGAGGTGCTACGGAGATTTAGTATTACATCATCGTTTACGCAAAAATGGTGGGGAGGCTTCCTGTTTTGAAACTGAATGACACACAGTTTAGATGCATCCGTCTTTTACCAAAAATAGGGATCAGCAGATTTGGAAAAGAGCCAATCTTCCACTTGATATTCCCACCCAATGGTTATTGTCTGTGGCTTGCCGCGACATACTACAGTCACAAATGCTACAAGAACTAGTGCCAATGCTAACTGCCTTAATGATAATCAGAGAATATGGCATTGCATTCACATACAGCTACAGTGTGCCCTACTCCTACTGATGGGCAGTATGTGCCATAGCAACCCAAAATAAACTTTTAAGTGAATTAGAATCTGCTTTTTtagaaaacaaaaaaatgtacCCGATTTTATTAAAGCATACAATACCAAACCTCAAAACTACAAAGATACCACAATATGTTACAAAGAAAATCCACCGACACATACAGGACACATTTTGAAACAGAGGAAAATCTCTCTCGCTTTCATTCTATCTTTGGTTATCTACCTCCTCTTCCCCTAccccctcttttccctctctttctttcttacaCTCTATAATATTGATGCGGGTAATTAGTACCATAGACACAAAGTTTATATTTCTTGTTACTTTTGTGCTCTGTCGTGCATAAGTAAGGCACCTTGTTGATAAATCAAAAAAATGACTttttaaaagaaaaaaaagatgGATGCAAGGACCGAAACCAATGAAGGACATCTTTTTTTGCATTATATGTGAATATTGACGAGGAGGAGATATCTCCCAAGAGAAGGAGAAACCAGGGAGATGGACGATGTATTCTTTCGTGGCGTTTCATGTCGGGCTGCGGGTCCGTACATCAGCACCCCTTTAATCTGAGCCTCAAAACTGGCTGTGGAAAGGGGACGCAGCATGACCTCCATACGTCCTTTCtggttatgtgtgtgtatgggggaggGTGTGAAGGTTAAAGGGGAGTTGGGACATGGATGCTATCTGAATGGTCTTAAAATGCAACTGTAGCATTTCCAACAATATAGTTAGATTAACTGTGCAGATTAGATAAGACATTGTCATGGTAAATGGTTTGATAAAACGGCTGTAAACTCACTTTGCTATAAGCAGTGAGTTTGAAGTCTCGAACGATGAGAAAAATTGATTTGTGGTACACAGTTCAGCAAGGATAGGATTCAGCTCTGTGTCCGTGGCTGAAAAAAAATGACCTTTGTTTGTAGTGAGAACCAATGTGGCTACCTCACTAAGCTGAGTGGTTTGTGAAACCGCCACGAATACCAAAGATTACTCCAGCCTGCCAGTCCAATGCTGCCTGGGGGACACACCAAAAAGAGCCCCCCTCTGCCCCAAcgctgttacagacagacacaatgacaCAGTTAGACACACTGACATGctccatacacacacagtgcagtcAGGCTGCATTGTGCCACAAAGGAGGAGGTGGCTACCATGTAGATTGAGTTGAGTGCCTTTTTCCTTCAACCACGGGTGGGACtgctctggacacacacacgcgcgcgcacacactcacacatagacaTTACATTCATTATTAGATGGACAGAAAGGGGGGCCAAACAAAGGGCGTGGGGGCTGTGTCAGCATCTTCTTTCATGTTGACTTTCCATCTTGATACACTAGAATCCAAGCACTTTATCATGAAGGAAGTCTAGAAAACATTTTCTATACGCTATTTATTTGAGACAAAAAAAATATGTTACTTTGAATTCCTTCGATGGCTTTGTTACGGCGCAGTAGTTGCTGTCGGAGTAGCGCAGAGCCCTAGTTTCTGTAGCCTGGTGTTCTTCTGCTCTCTGTCCCTTTACCCCTCCCAACAGAGATATTTTTATGTAACAGAAAGGGGGGTGGTTAAGGGCTTTGACAGAAGTCAGAAGTGACCAGGTTGTAGTTGTAATATCGCCCCATTGcatgccactctctctctccacacctggtGCCAGAACTAATGAAGCACTGGGCACTGGAACAGTCATTGACAATTATAGACTGACACaacttccctctccctccaaccccaccCTGTCTACTCGTCTCACACATCAACTTCTCCCCCTGGCCAGAGCTAAGACTTGGTAGGCATGTGTTGACAATTAATTCTGAAATACCTCAAACCTTTCATGTAAAGTTTATGTAATTTAACTTAAAATAGTCATGCGAATGATAACAATGATTATGATACTACGATACTATGATAGTTAGTTTTGGAACTTGTAACTTGAAGCTTTATACTGTTACATTTTTTAATTTGTTTGCTCATTTTCTTGTCTGTTTCCTGCTTGTTTTGCTACGGCATGCACTTCATGTTTTCATAAAGGAAAGACATTGTGAATGTTTCTGTGGAAGTTCAAACGGGAAAAGAACAAGGGACAGGAGAGAAGGCTAtaagaggaaggaaagagagagaaagagtgctaCAAGAGCTACTCAACACATAGTTAGCTCAACTCTTGGAGAGGTGTTTTttcaaagacaaaaaaaacacagaTTTGGATCGAATTCCAAAAAGTATCATTTGAATATCAACCAAAGGAAGACCTTTTTTACTCATCCTAAGCTTTCTTCTGACATGTTGTTCTCTTTTCTCCAAAACAATTTCACAGTTACTTTTGAAGGTTCCTGAGTGTGTTCAAGTACTCCTGATGttattaaaatataaaaaaacagcACCTCTCACTGAAAGGGGGGTGCAACCTTTTTCTTTCTGCATGGATATTGTATAACTGTATAGAAACCTACAGGAATGACCTGTGATTTtgtgggagaggaggaaggaaagactgggggggtggaggggggtatTTGGTAAAAGGGCGGGGTTGGGGTTTGGCGTTGGAGGAGTCTTTGTTTTTAGACTTTTTGTCACTGTTGGATTCACTGGTTGTGTGCATGTGTTGTTTCAACCCTTTCCCCCTCCCCAATGTATATAAATCCCGACAGTAGGGGGCAGTGTGCTGGGGAgattccactcctcctctccaatcAATCTCATTCAATCTCATTCCTCAGCCTGGCTACTAACAAGGTCCTGTTGGTGGCTGTCCTGCTTTTCCAAGGCCGGGTTGTTTCCTTGGAGTTAATCAGAGGGACTAAGCCACAGGCCTGGGTGTAGCTgcctatatgtactgtatgtctcatCCTTTTctttcatctgtgtgtgtttgtgcgtgtgcatTTGAATTTATGTGAAAAATTGTTCTTTCTTTGGGTTCTAATCTTTTTCATGCAAAATGTAAACATTTACCAACCAACCAGTACGTTGGCAACTGACCCCTCCAACCAGAGATGTTCTCATCTTCTGTCAAACAGCATATGTGCATCATTTCCCCTTGGGATGTAAAGTTGCCAGTCGGCCTGCAGTCAGACCCCGTTACCACCCCCAGTCACACTGTGCTCTCCCTCTTCTGGTACCTGTTAATCAATCAGAACCAAGTGTCTTTGTGATGGTAGAAGACAATCAGTTTCAAAACAAGGAAAAGGTCGAGAGAGGACAGGCCGGTAGGGGGGATTGGGAAATCGGGAAAAGAGGCTCTCCGGGTTGTTTACTGCTGTAGTGCCCCAACTGCCAAAATATGCCCACAACCCACTACCCCACAGTCCAATACACTCCCTATCATACATCTCATCACAAGCCACACATGTAGTagggtggcaagtagcctagtggtttagactgttgggccagtaaccaaaaaggttACTGATTCAAatcctgagctgactaggtgaaaaatctgtcaatgcgcccttgaacaaggcacttaaccataattgctcctgtatgttgctctgtctgctaaattactaaaatgtaaaatcaTCCCAGACATTTCGCCCTTACCTTGAGAAACTCTTACTCTGACATCCCTTGTATAGTAACCAATTTCTGATCAAGAAGGACACCCAACAACAttccctctcacctgtctgtctcaCGTGCCTTCCTTCACTGGCACTGCATTGGGTGGGAGAAAAACTACACAATGCAGTGCAAAACAGCAATCACTACATTTCCCATCTAACCCCTCTCCTTCTGATCTAATGTTGACAAAACCAGCCGTGAGAAATAAGAGGATATGGCTGGTGGCTTTTGCACAGAAATCTATGCAAACACCTGACCCCCCAATCTTAGTCATTGCTGCTGGGTCAGAGTGTACAACCTTCTATCCCCCACCTACCCTTTCCATTtcatgacccctgacccctcccgGTTTCCCCCAGAGTGGGTCTAGCAGCTCCAGACACTCAGGGTACTGTAGAGTGCCTGGAGAGGAGAGGCACTACAGCACTGACTCTCTAGTGGGTACCAGACTTTATTTTTACTAGATTTTAGAACGGTCCCAAACTGCCATTGACATGACATGGAGTCCATGCCCATACACGGGTAGCCTAAATCATTTTGCTATATGGTCACACGTAACAATGTTGGATagtctctgtttagggacaaggAAGGCCCCAGTCAATCAATGCAGACATCCAAATGGACCATAGTTTACATAAGTTTCAAAAGGCAAGGGTGACTTTCAGTAAACACAAACTAactcatacagacacacacacatggaattgAAGTCTGCCATTTGAGAGCGTATGCTAAAAACCAAAGATGAAATCAGAGGTATGAAAACCTGACCACTGAACCAAGACAATGGCCAGCTCTCAAAGCTGCTCTATTGACTCCAACACTggccatgtaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacagcctctggtCTGAGAGCCTCTTTTCCCTCCTCCCACTGCAGAAGCCGGAGAGCCTGTGGATAACTTTTTGTTTAGCTCTAGTGGAGACTTTTTAAATGGAAAAAAATCTGAGTAATAGCTAACTGTTACAGAAAATAAAAACTTAAAAGGATAATATGGGTAAATTGCGTGTTTTGAAATAAATTAACAAATAAAACAAGGATAA

Function

NR:

description
hepatocyte nuclear factor 6-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603820.2 True 8221 mRNA 0.47 2 63613897 63637179

Neighbor

gene id symbol gene type direction distance location
foxq2 LOC106614005 coding upstream 56774 63554638 ~ 63557123 (+)
unc13a LOC106613770 coding upstream 237682 63322539 ~ 63376215 (+)
LOC110524287 LOC106613768 coding upstream 293959 63314536 ~ 63319938 (+)
LOC110524284 LOC106613766 coding upstream 310494 63297083 ~ 63303403 (+)
LOC118964772 NA coding upstream 313385 63300445 ~ 63300512 (+)
si:dkey-172o19.2 LOC106614009 coding downstream 33022 63670201 ~ 63672004 (+)
nfil3-4 LOC106614010 coding downstream 39230 63676409 ~ 63684848 (+)
peak3 oaz1 coding downstream 151945 63789124 ~ 63829666 (+)
LOC110524307 NA coding downstream 179369 63816548 ~ 63818313 (+)
crlf1b LOC106613786 coding downstream 508917 64146096 ~ 64158106 (+)
G425505 NA non-coding upstream 78676 63534413 ~ 63535221 (+)
G425497 LOC106613774 non-coding upstream 85674 63527851 ~ 63528223 (+)
G425434 NA non-coding upstream 109711 63502741 ~ 63504186 (+)
G425433 LOC106613775 non-coding upstream 118204 63494781 ~ 63495693 (+)
G425466 NA non-coding upstream 147841 63464112 ~ 63466056 (+)
G426172 NA non-coding downstream 185558 63822737 ~ 63823909 (+)
G426248 NA non-coding downstream 230286 63867465 ~ 63867704 (+)
G426173 NA non-coding downstream 232197 63869376 ~ 63872095 (+)
G425224 NA other upstream 562367 63045090 ~ 63051530 (+)
LOC110524265 LOC106613745 other upstream 1306960 62283054 ~ 62327772 (+)
G424079 NA other upstream 1508025 62105523 ~ 62105872 (+)
G423922 NA other upstream 1891873 61721537 ~ 61722024 (+)
LOC110524226 LOC106573564 other upstream 2917992 60694220 ~ 60695905 (+)
sac3d1 sac3d1 other downstream 539849 64177028 ~ 64183138 (+)
LOC110522985 NA other downstream 606423 64243153 ~ 64244790 (+)
G427476 NA other downstream 1354922 64992101 ~ 64997138 (+)
LOC110524338 LOC106584398 other downstream 1387536 65024444 ~ 65028828 (+)

Expression


Co-expression Network