nfil3-4 (LOC106614010)


Basic Information

Item Value
gene id nfil3-4
gene name LOC106614010
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63676409 ~ 63684848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603821.2
GTGAGGTCACACATTGTGGTGGTCTGTGACGAAGCCACTTTACCGTAGGTGAACTTCAGGTGAGATACAGGGGAAGGATGAGTATACAGTTCTGTAAGTTACCGTCTGCTGCTCACAGAGACACAATGGGCGGGCGGTGGAACATTGACTGAGGTCATTGTCACATTGCGTCAGTGTTGTACTTACTGGAATATAGTTGCCAGCAGCAGAAGGTGACATCCTAGAAAACCAACCTGAAAGAAGTGCATGAGAAGTTACTTATCTTCCTTTTACCTGCCCAACAAAGAAACAGCCATCCTATTTTCTATACTGAGACCAGATGGAACCCATGTCGCTATCTCCAAACGGGAGCATCGAGGAAGTGGAGGACGGTCACATAGCCTACCTAGATGGGGAGCTGGCACCCAAGGGCCTGCGGCGCAAGAGAGAGTTTATCCCAAATGAGAAGAAGGACGCCACCTACTGGGAGAAGCGTCGCAAGAACAACGAGGCGGCCAAGCGGTCGcgggagaagaggagggtgaaCGATTATGTGCTGGAGAGCCGCCTGGTGGCCATGAGTGAAGAGAACGCCCGGTTGAACACAGAACTGCTGGCCCTCAAACTCCACTTTGGCCTGGTGAGCCCTGCGGCCTACGCTGCCCACCAGAACAGCCTGCTACGGCTCCGCCATGCGAACACCTATAGCCCCCAGTCTCCGCCACCCAGCAGCTCAACCCAGTCCCTGGACAGGGATGTCTACTGGGGCAGGAGTCCCAGCTACAGAGACCCTTCCACCCTGCCCACTTACCACCACCGACCCTCCGTCCTGACTGGGCAACCTGCCCCTGCCCTGATCCATCCACATGCTCTACCAACCAGAAGGGGCTATCCATACATCTTAGACATGCCCAGTGTCCTCCACCCTGCAAACTCATCCTCCCTTCTCCTGCCCCCGCTTCTCCCCCCTGCCCTATCGTCGTGGCCGGGGGTTCCCCTGCTGAGGCCCACCCCTAAGAGAAGGTGTTCAGATGAGGAGGGGGAACAGCAGGTCCCAGCAGCCTCCTCCAGCGGTGTATTACCACACAAGCTGAGGCTGAAGACCCCCAGAGCTTCTACTGTCCTTAGGGATGTCAGAGATAGGGCCTCCCCCCCACTCCCGGTTTATGTATCTGACTGACCACACTGCACAGAGCAGACCAACCACAGCGCTGGAACATTGACACCAAAGTTATAGCAAAGACGTTATGTACAACTTAAAACAGACATTTGTTTGATTTATTAATTATTGTTTTTGCTTCTCTGCCATGCTTCTTTAGTGTCCAAGTTAACGGGATAAAATCTATTATAGCATACTTTACTGTAAATTCTGCTTAATTAGCCGGACTTTAAGTGTTTTATAGCACTGAGAGACTCCAGTTCACTTACAGTATGTATGTAAAACTCAATATGGGCAGCCAATATAATAATTTGATTTTAACTTTTTGGAATGGATGGAATTTATCTTTTCAAATTAATAAATTCCTCTTATTGTT
>TU482675
GTCACACATTGTGGTGGTCTGTGACGAAGCCACTTTACCGTAGGTGAACTTCAGGTGAGATACAGGGGAAGGATGAGTATACAGTTCTGTAAGTTACCGTCTGCTGCTCACAGAGACACAATGGGCGGGCGGTGGAACATTGACTGAGGTCATTGTCACATTGCGTCAGTGTTGTACTTACTGGAATATAGTTGCCAGCAGCAGAAGGTGACATCCTAGAAAACCAACCTGAAAGAAGTGCATGAGAAGTTACTTATCTTCCTTTTACCTGCCCAACAAAGAAACAGCCATCCTATTTTCTATACTGAGACCAGATGGAACCCATGTCGCTATCTCCAAACGGGAGCATCGAGGAAGTGGAGGACGGTCACATAGCCTACCTAGATGGGGAGCTGGCACCCAAGGGCCTGCGGCGCAAGAGAGAGTTTATCCCAAATGAGAAGAAGGACGCCACCTACTGGGAGAAGCGTCGCAAGAACAACGAGGCGGCCAAGCGGTCGcgggagaagaggagggtgaaCGATTATGTGCTGGAGAGCCGCCTGGTGGCCATGAGTGAAGAGAACGCCCGGTTGAACACAGAACTGCTGGCCCTCAAACTCCACTTTGGCCTGGTGAGCCCTGCGGCCTACGCTGCCCACCAGAACAGCCTGCTACGGCTCCGCCATGCGAACACCTATAGCCCCCAGTCTCCGCCACCCAGCAGCTCAACCCAGTCCCTGGACAGGGATGTCTACTGGGGCAGGAGTCCCAGCTACAGAGACCCTTCCACCCTGCCCACTTACCACCACCGACCCTCCGTCCTGACTGGGCAACCTGCCCCTGCCCTGATCCATCCACATGCTCTACCAACCAGAAGGGGCTATCCATACATCTTAGACATGCCCAGTGTCCTCCACC

Function

NR:

description
nuclear factor interleukin-3-regulated protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603821.2 False 1514 mRNA 0.51 2 63676409 63684848
TU482675 True 900 TUCP 0.55 2 63676414 63684239

Neighbor

gene id symbol gene type direction distance location
si:dkey-172o19.2 LOC106614009 coding upstream 4405 63670201 ~ 63672004 (+)
onecut3a LOC106613776 coding upstream 39230 63613897 ~ 63637179 (+)
foxq2 LOC106614005 coding upstream 119286 63554638 ~ 63557123 (+)
unc13a LOC106613770 coding upstream 300194 63322539 ~ 63376215 (+)
LOC110524287 LOC106613768 coding upstream 356471 63314536 ~ 63319938 (+)
peak3 oaz1 coding downstream 104276 63789124 ~ 63829666 (+)
LOC110524307 NA coding downstream 131700 63816548 ~ 63818313 (+)
crlf1b LOC106613786 coding downstream 461248 64146096 ~ 64158106 (+)
sac3d1 sac3d1 coding downstream 492207 64177028 ~ 64183138 (+)
LOC110524317 LOC106613471 coding downstream 499599 64184447 ~ 64237088 (+)
G425505 NA non-coding upstream 141188 63534413 ~ 63535221 (+)
G425497 LOC106613774 non-coding upstream 148186 63527851 ~ 63528223 (+)
G425434 NA non-coding upstream 172223 63502741 ~ 63504186 (+)
G425433 LOC106613775 non-coding upstream 180716 63494781 ~ 63495693 (+)
G425466 NA non-coding upstream 210353 63464112 ~ 63466056 (+)
G426172 NA non-coding downstream 137889 63822737 ~ 63823909 (+)
G426248 NA non-coding downstream 182617 63867465 ~ 63867704 (+)
G426173 NA non-coding downstream 184528 63869376 ~ 63872095 (+)
G425224 NA other upstream 624879 63045090 ~ 63051530 (+)
LOC110524265 LOC106613745 other upstream 1369472 62283054 ~ 62327772 (+)
G424079 NA other upstream 1570537 62105523 ~ 62105872 (+)
G423922 NA other upstream 1954385 61721537 ~ 61722024 (+)
LOC110524226 LOC106573564 other upstream 2980504 60694220 ~ 60695905 (+)
LOC110522985 NA other downstream 558754 64243153 ~ 64244790 (+)
G427476 NA other downstream 1307253 64992101 ~ 64997138 (+)
LOC110524338 LOC106584398 other downstream 1339867 65024444 ~ 65028828 (+)
G427747 NA other downstream 1769008 65453856 ~ 65521380 (+)

Expression


Co-expression Network