org (LOC106614011)


Basic Information

Item Value
gene id org
gene name LOC106614011
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63780729 ~ 63783015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603823.2
ttgctaactggttacCTAGTTATACACATGCCGCATTCAACGAGTTAGCAAGTCTGACATTTCTGAGTTTAGTTCCGAATAGCATATGAACTAGTCACATTTTGCCTACCGAATGTGACAGGCTATTGTCGGCCTATCTGATGTTGGCCCATACCTTTCTACAGATGCTGCCATAATTCATAATTTCGCTAATTAGTGATTCGATAAATGGTCACAGTTAGCCTAATTGTTTGTGTGGGGTGATTGGCTCATCTTCTGCTATTCCGGGGTTCATAAGAACACTGATCACATACCGCTGTTATCAGCTTCCTTCCAATCTATCGCCACATTGATCAGTATGACCTCTGAATGTAGCGTCGCCATCGAACAGGACAACGACGGTGTTGAGGACAAAGTTGTGGTgaagagagacagtgtgttaacCACTGTATTCTGTCGCCTGTCACAGTTTTGGCCTGTCAGACTAGCGATGCGTGCTCTCCGTGGGTTTTGGTGGCTGTTGGGTTTCTCCCCTTCAGATGAGGCTTTTGTTCCTCCAGAAGAGGATGACAATCCTAGTCCAGCCCGCCACTGTCTAGCAGGCCGCAAGCGTCTGCGTCGAGCCACACGCATCCTGTTGGCCATCCTGCCTCGCCGTCTGCAGAGCGCCCTGGGCTACCCTGTGTGCACCAGCATCGGCTGTGCTGTATCCCCAGaggtgCTTTGCTCCCCCACTAAGCTCTGTGGGAAAGGCAACAAGAGGAAGCAGGATGACATTGATGACGATGAGGAGCAGCAGACCTGGGTCGAGGCACTCTCTCAGGAACTAGAGGATGAGGAGCCTTCTGTTGATCCTGACTATGAGCTGAGTGCAGTGGATACTGACAGTGAGGAGTATAACTCTCAAAATGACACAGAAAGTGACATTGATGTTTCAGGGAAGGTTGTGATCGATGACCTTAAAACGGTACAGAAATGTTCCTCAGACGGCATAGTGGAAGGTGGCATTTCAGGTACATCTGGTGCGCCGCCTTCAGTTTTATCACCACCTGTAAGCCTCCAGTGCCAGTATTCACTTTTTGCTTGTTTGTAATTTACTAAATAAAACATTCATCTTTATGTGCA
>XM_021603826.2
ttgctaactggttacCTAGTTATACACATGCCGCATTCAACGAGTTAGCAAGTCTGACATTTCTGAGTTTAGTTCCGAATAGCATATGAACTAGTCACATTTTGCCTACCGAATGTGACAGGCTATTGTCGGCCTATCTGATGTTGGCCCATACCTTTCTACAGATGCTGCCATAATTCATAATTTCGCTAATTAGTGATTCGATAAATGGTCACAGTTAGCCTAATTGTTTGTGTGGGGTGATTGGCTCATCTTCTGCTATTCCGGGGTTCATAAGAACACTGATCACATACCGCTGTTATCAGCTTCCTTCCAATCTATCGCCACATTGATCAGTATGACCTCTGAATGTAGCGTCGCCATCGAACAGGACAACGACGGTGTTGAGGACAAAGTTGTGGTgaagagagacagtgtgttaacCACTGTATTCTGTCGCCTGTCACAGTTTTGGCCTGTCAGACTAGCGATGCGTGCTCTCCGTGGGTTTTGGTGGCTGTTGGGTTTCTCCCCTTCAGATGAGGCTTTTGTTCCTCCAGAAGAGGATGACAATCCTAGTCCAGCCCGCCACTGTCTAGCAGGCCGCAAGCGTCTGCGTCGAGCCACACGCATCCTGTTGGCCATCCTGCCTCGCCGTCTGCAGAGCGCCCTGGGCTACCCTGTGTGCACCAGCATCGGCTGTGCTGTATCCCCAGaggtgCTTTGCTCCCCCACTAAGCTCTGTGGGAAAGGCAACAAGAGGAAGCAGGATGACATTGATGACGATGAGGAGCAGCAGACCTGGGTCGAGGCACTCTCTCAGGAACTAGAGGATGAGGAGCCTTCTGTTGATCCTGACTATGAGCTGAGTGCAGTGGATACTGACAGTGAGGAGTATAACTCTCAAAATGACACAGAAAGTGACATTGATGTTTCAGGGAAGGTTGTGATCGATGACCTTAAAACGAATGTTCCTCAGACGGCATAGTGGAAGGTGGCATTTCAGGTACATCTGGTGCGCCGCCTTCAGTTTTATCACCACCTGTAAGCCTCCAGTGCCAGTATTCACTTTTTGCTTGTTTGTAATTTACTAAATAAAACATTCATCTTTATG
>XM_021603825.2
tgctaactggttacCTAGTTATACACATGCCGCATTCAACGAGTTAGCAAGTCTGACATTTCTGAGTTTAGTTCCGAATAGCATATGAACTAGTCACATTTTGCCTACCGAATGTGACAGGCTATTGTCGGCCTATCTGATGTTGGCCCATACCTTTCTACAGATGCTGCCATAATTCATAATTTCGCTAATTAGTGATTCGATAAATGGTCACAGTTAGCCTAATTGTTTGTGTGGGGTGATTGGCTCATCTTCTGCTATTCCGGGGTTCATAAGAACACTGATCACATACCGCTGTTATCAGCTTCCTTCCAATCTATCGCCACATTGATCAGTATGACCTCTGAATGTAGCGTCGCCATCGAACAGGACAACGACGGTGTTGAGGACAAAGTTGTGGTgaagagagacagtgtgttaacCACTGTATTCTGTCGCCTGTCACAGTTTTGGCCTGTCAGACTAGCGATGCGTGCTCTCCGTGGGTTTTGGTGGCTGTTGGGTTTCTCCCCTTCAGATGAGGCTTTTGTTCCTCCAGAAGAGGATGACAATCCTAGTCCAGCCCGCCACTGTCTAGCAGGCCGCAAGCGTCTGCGTCGAGCCACACGCATCCTGTTGGCCATCCTGCCTCGCCGTCTGCAGAGCGCCCTGGGCTACCCTGTGTGCACCAGCATCGGCTGTGCTGTATCCCCAGaggtgCTTTGCTCCCCCACTAAGCTCTGTGGGAAAGGCAACAAGAGGAAGCAGGATGACATTGATGACGATGAGGAGCAGCAGACCTGGGTCGAGGCACTCTCTCAGGAACTAGAGGATGAGGAGCCTTCTGTTGATCCTGACTATGAGCTGAGTGCAGTGGATACTGACAGTGAGGAGTATAACTCTCAAAATGACACAGAAAGTGACATTGATGTTTCAGGGAAGGTTGTGATCGATGACCTTAAAACGAATGTTCCTCAGACGGCATAGTGGAAGGTGGCATTTCAGGTGCGCCGCCTTCAGTTTTATCACCACCTGTAAGCCTCCAGTGCCAGTATTCACTTTTTGCTTGTTTGTAATTTACTAAATAAAACATTCATCTTTA
>XM_021603824.2
ttgctaactggttacCTAGTTATACACATGCCGCATTCAACGAGTTAGCAAGTCTGACATTTCTGAGTTTAGTTCCGAATAGCATATGAACTAGTCACATTTTGCCTACCGAATGTGACAGGCTATTGTCGGCCTATCTGATGTTGGCCCATACCTTTCTACAGATGCTGCCATAATTCATAATTTCGCTAATTAGTGATTCGATAAATGGTCACAGTTAGCCTAATTGTTTGTGTGGGGTGATTGGCTCATCTTCTGCTATTCCGGGGTTCATAAGAACACTGATCACATACCGCTGTTATCAGCTTCCTTCCAATCTATCGCCACATTGATCAGTATGACCTCTGAATGTAGCGTCGCCATCGAACAGGACAACGACGGTGTTGAGGACAAAGTTGTGGTgaagagagacagtgtgttaacCACTGTATTCTGTCGCCTGTCACAGTTTTGGCCTGTCAGACTAGCGATGCGTGCTCTCCGTGGGTTTTGGTGGCTGTTGGGTTTCTCCCCTTCAGATGAGGCTTTTGTTCCTCCAGAAGAGGATGACAATCCTAGTCCAGCCCGCCACTGTCTAGCAGGCCGCAAGCGTCTGCGTCGAGCCACACGCATCCTGTTGGCCATCCTGCCTCGCCGTCTGCAGAGCGCCCTGGGCTACCCTGTGTGCACCAGCATCGGCTGTGCTGTATCCCCAGaggtgCTTTGCTCCCCCACTAAGCTCTGTGGGAAAGGCAACAAGAGGAAGCAGGATGACATTGATGACGATGAGGAGCAGCAGACCTGGGTCGAGGCACTCTCTCAGGAACTAGAGGATGAGGAGCCTTCTGTTGATCCTGACTATGAGCTGAGTGCAGTGGATACTGACAGTGAGGAGTATAACTCTCAAAATGACACAGAAAGTGACATTGATGTTTCAGGGAAGGTTGTGATCGATGACCTTAAAACGGTACAGAAATGTTCCTCAGACGGCATAGTGGAAGGTGGCATTTCAGGTGCGCCGCCTTCAGTTTTATCACCACCTGTAAGCCTCCAGTGCCAGTATTCACTTTTTGCTTGTTTGTAATTTACTAAATAAAACATTCATCTTTA
>XM_036978053.1
ttgctaactggttacCTAGTTATACACATGCCGCATTCAACGAGTTAGCAAGTCTGACATTTCTGAGTTTAGTTCCGAATAGCATATGAACTAGTCACATTTTGCCTACCGAATGTGACAGGCTATTGTCGGCCTATCTGATGTTGGCCCATACCTTTCTACAGATGCTGCCATAATTCATAATTTCGCTAATTAGTGATTCGATAAATGGTCACAGTTAGCCTAATTGTTTGTGTGGGGTGATTGGCTCATCTTCTGCTATTCCGGGGTTCATAAGAACACTGATCACATACCGCTGTTATCAGCTTCCTTCCAATCTATCGCCACATTGATCAGTATGACCTCTGAATGTAGCGTCGCCATCGAACAGGACAACGACGGTGTTGAGGACAAAGTTGTGGTgaagagagacagtgtgttaacCACTGTATTCTGTCGCCTGTCACAGTTTTGGCCTGTCAGACTAGCGATGCGTGCTCTCCGTGGGTTTTGGTGGCTGTTGGGTTTCTCCCCTTCAGATGAGGCTTTTGTTCCTCCAGAAGAGGATGACAATCCTAGTCCAGCCCGCCACTGTCTAGCAGGCCGCAAGCGTCTGCGTCGAGCCACACGCATCCTGTTGGCCATCCTGCCTCGCCGTCTGCAGAGCGCCCTGGGCTACCCTGTGTGCACCAGCATCGGCTGTGCTGTATCCCCAGaggtgCTTTGCTCCCCCACTAAGCTCTGTGGGAAAGGCAACAAGAGGAAGCAGGATGACATTGATGACGATGAGGAGCAGCAGACCTGGGTCGAGGCACTCTCTCAGGAACTAGAGGATGAGGAGCCTTCTGTTGATCCTGACTATGAGCTGAGTGCAGTGGATACTGACAGTGAGGAGTATAACTCTCAAAATGACACAGAAAGTGACATTGATGTTTCAGGGAAGGTTGTGATCGATGACCTTAAAACGGTACAGATTGTCTTTTTGCCTTGTTTGCAGAATGTTCCTCAGACGGCATAGTGGAAGGTGGCATTTCAGGTACATCTGGTGCGCCGCCTTCAGTTTTATCACCACCTGTAAGCCTCCAGTGCCAGTATTCACTTTTTGCTTGTTTGTAATTTACTAAATAAAACATTCATCTTTA
>XM_036978054.1
ttgctaactggttacCTAGTTATACACATGCCGCATTCAACGAGTTAGCAAGTCTGACATTTCTGAGTTTAGTTCCGAATAGCATATGAACTAGTCACATTTTGCCTACCGAATGTGACAGGCTATTGTCGGCCTATCTGATGTTGGCCCATACCTTTCTACAGATGCTGCCATAATTCATAATTTCGCTAATTAGTGATTCGATAAATGGTCACAGTTAGCCTAATTGTTTGTGTGGGGTGATTGGCTCATCTTCTGCTATTCCGGGGTTCATAAGAACACTGATCACATACCGCTGTTATCAGCTTCCTTCCAATCTATCGCCACATTGATCAGTATGACCTCTGAATGTAGCGTCGCCATCGAACAGGACAACGACGGTGTTGAGGACAAAGTTGTGGTgaagagagacagtgtgttaacCACTGTATTCTGTCGCCTGTCACAGTTTTGGCCTGTCAGACTAGCGATGCGTGCTCTCCGTGGGTTTTGGTGGCTGTTGGGTTTCTCCCCTTCAGATGAGGCTTTTGTTCCTCCAGAAGAGGATGACAATCCTAGTCCAGCCCGCCACTGTCTAGCAGGCCGCAAGCGTCTGCGTCGAGCCACACGCATCCTGTTGGCCATCCTGCCTCGCCGTCTGCAGAGCGCCCTGGGCTACCCTGTGTGCACCAGCATCGGCTGTGCTGTATCCCCAGaggtgCTTTGCTCCCCCACTAAGCTCTGTGGGAAAGGCAACAAGAGGAAGCAGGATGACATTGATGACGATGAGGAGCAGCAGACCTGGGTCGAGGCACTCTCTCAGGAACTAGAGGATGAGGAGCCTTCTGTTGATCCTGACTATGAGCTGAGTGCAGTGGATACTGACAGTGAGGAGTATAACTCTCAAAATGACACAGAAAGTGACATTGATGTTTCAGGGAAGGTTGTGATCGATGACCTTAAAACGGTACAGATTGTCTTTTTGCCTTGTTTGCAGAATGTTCCTCAGACGGCATAGTGGAAGGTGGCATTTCAGGTGCGCCGCCTTCAGTTTTATCACCACCTGTAAGCCTCCAGTGCCAGTATTCACTTTTTGCTTGTTTGTAATTTACTAAATAAAACATTCATCTTTA

Function

NR:

description
uncharacterized protein LOC110524301 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603823.2 False 1104 mRNA 0.48 7 63780729 63783015
XM_021603826.2 False 1093 mRNA 0.48 7 63780733 63783015
XM_021603825.2 False 1081 mRNA 0.48 7 63780735 63783014
XM_021603824.2 False 1089 mRNA 0.48 7 63780735 63783015
XM_036978053.1 False 1121 mRNA 0.48 7 63780735 63783015
XM_036978054.1 True 1112 mRNA 0.48 7 63780735 63783015

Neighbor

gene id symbol gene type direction distance location
lingo3a LOC106613778 coding downstream 36030 63703620 ~ 63744699 (-)
LOC110524294 LOC106613774 coding downstream 245664 63502616 ~ 63535065 (-)
LOC110524297 LOC106613775 coding downstream 278362 63492427 ~ 63502367 (-)
LOC110524292 LOC106613773 coding downstream 289124 63462504 ~ 63491605 (-)
LOC110524290 LOC106613772 coding downstream 337300 63417964 ~ 63443429 (-)
LOC110524304 oaz1 coding upstream 15881 63798180 ~ 63803024 (-)
LOC110524306 amh coding upstream 34865 63817880 ~ 63822170 (-)
LOC110524305 dot1l coding upstream 45092 63827147 ~ 63854234 (-)
LOC110524308 LOC106613783 coding upstream 86331 63869346 ~ 63911602 (-)
fkbp8 LOC106613784 coding upstream 129436 63912451 ~ 63925585 (-)
G426613 NA non-coding downstream 737 63710572 ~ 63779992 (-)
G426626 NA non-coding downstream 11708 63741961 ~ 63769021 (-)
G426112 NA non-coding downstream 138954 63641447 ~ 63641775 (-)
G426014 NA non-coding downstream 189865 63590650 ~ 63590864 (-)
G425968 NA non-coding downstream 256617 63523913 ~ 63524112 (-)
G426695 NA non-coding upstream 166439 63949454 ~ 63951278 (-)
G426777 NA non-coding upstream 307415 64090430 ~ 64090736 (-)
G426842 LOC106613471 non-coding upstream 418225 64201240 ~ 64205818 (-)
G425810 LOC106613766 other downstream 477335 63300924 ~ 63303394 (-)
LOC110524282 LOC106584262 other downstream 520260 63257597 ~ 63260481 (-)
G425647 NA other downstream 880226 62894659 ~ 62900503 (-)
G425612 NA other downstream 930482 62850004 ~ 62850247 (-)
LOC110524277 LOC106613757 other downstream 972607 62803832 ~ 62808176 (-)
LOC110522986 LOC106613472 other upstream 500953 64283744 ~ 64297376 (-)
G427287 NA other upstream 783666 64566681 ~ 64568380 (-)
LOC110524330 LOC106613802 other upstream 918859 64701867 ~ 64810664 (-)
LOC110524332 LOC106613803 other upstream 1122030 64903039 ~ 64911196 (-)
G427902 ubxn6 other upstream 1216693 64999708 ~ 65011598 (-)

Expression


Co-expression Network