LOC110524318 (LOC106584418)


Basic Information

Item Value
gene id LOC110524318
gene name LOC106584418
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64243519 ~ 64246283 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603850.2
GGAGAGAGGGACGGTTTGAGTTCAAAATTTGCCGATAGACTTTGGATGACAACTTGCGCCCATTCCAAGCTAGTTAGCTAAGCTTATTGACACCTTTCTGAAAATACGAAAACGAACCCAGAAGATTGTgtaatatatttatgtttgattAAACATGTCGAAGAAAGAAATTTACTACTCTGACAAGTACACAGATGAAGCATTCGAGTACAGGCATGTTATGCTTCCGAAACAGTTATCCAAGCTGGTGCCCACCTCTCATTTGATGACAGAAGATGAATGGAGGGGTCTGGGGGTGCAGCAGAGCCAGGGCTGGATCCACTACATGATCCACAAGCCAGAGCCGCATATATTGCTTTTCCGAAGACCTCTTCCAAAGGATTGAGTGGAAATCATCTTCCACGTCCCGGAAAACCGCCTCAGTTGAATTGTATGGTCTTTGTTGACTAAACAAGATGTACATCTCTCCATGTGTTTTGGTGTATagaatagaccatttattttcagtttttttaaaCTCCTCAAAATATTGGCGGTATGATAGAGGTAGCCCAAGGAGAGTGGAAGGCAGAAGGCTCGGCCCTGACTAAGAGATGGTGAGCAGTTCTGCTTTGATAAGTGGCAACAATATGAAGATGGAATTTCTCTCATGAGACATTACCGAGTTTGAATAACATTTGGTACACTTTTATTGATGTTTACTTGTCAATATATGTTGTATTAATGAGCATAGTGGtcaaatgtagttttttttttttttcttgaacGTGGAACATTTTATTCAAAgaagaaatgtttttattttatttgtttttctgtgtgtgtgtgtgtgtgtattatcagACAGTATACGTTTTGACTGACTAGAGTCGCATTTCTGTTCATTCTAAATAGCACTGTTGCTGGATAGTACGTAAATACAATATATTTCTTTACTTTCTGTGTGGAAGTTTGTATATGTTCTTTTCTGTATCTAAACATCCTTAATTTCATATTTTATAATAAGCCAGCACGGCAGTAGAAATGGTTCTCATTTGTCACCTCATCGAGTTGTTTGTTTTGCAGATAAATCCAACATTGGTTAGGCCTAGTCCCATATGATGGAGGAACATGGTTGTGTAGTCAGCTACATTGACCACCAGTGGGGTGACAAACTCTGTGTCTGATGCCCAGAGAGAATGCTGGGGCCCGGGGCTTGTGGACAATCACCTTCTCAGGGTTACGAGTTCCAGGGAAGGCTTTAGAGTGGCATCGTTGGGGAAGCCATGGCAACCTAGCATGGAGAAAGCTGGTTGCCTGGGCAGGTAGACACTTGGATCTGTACTGTTGTATCTACCAGGGCCTGGGGTCTTGGACATGTCCTCTGAGGACCCCCTGGCAAGCTTGGTGGGGACCTGGGGGCCCATGAGAGCAGGAAGACGGTGCTTTTTAGGCGCTGAGTTGCTGCTACAGTAGCGAGTGTGGCAGCACATGGTATAGGATGGGGGTCTGCGCTGGATGTTGCATGGAGGAGCATTCTCAGGGCTATATGCCGCTAGTCCAGGAGTATGGAAAAGCCCTGCGGGTGGAAACGGCTGCAGTTAGCTTTGGCTTTCTAAAAACAAGCAACATTTTGAAATGGAATGCAATAGGTTAATTTAGATAATGCATATTTGTGAAGTACGTTCATGAAGTTTAGATCTAACAGCAGAAGGCAAGGCTTGAGCTGTCACATCCAGCTGTATCTTGTTGCCCTACTTATGTACGTGGCATATGAACTGCCACACTCAACAAGGTCCTTATGTAATTAACACCTCTATCAGGAAAAATCTACATTTTCACATATCCAATAAATAGCGCCCTGAGACTGCAGTCCTCTAGGAGGATGCTTTGGGTCTTTGTCAAATAAAAACATGGTTATACTTGATTTATTACAATGTTATAGGTGCATTAAAATGTGGAATCAGCTCTGAATTAAAAGTGTATTTACCTGAA
>TU483438
CTTTGGATGACAACTTGCGCCCATTCCAAGCTAGTTAGCTAAGCTTATTGACACCTTTCTGAAAATACGAAAACGAACCCAGAAGATTGTgtaatatatttatgtttgattAAACATGTCGAAGAAAGAAATTTACTACTCTGACAAGTACACAGATGAAGCATTCGAGTACAGGCATGTTATGCTTCCGAAACAGTTATCCAAGCTGGTGCCCACCTCTCATTTGATGACAGAAGATGAATGGAGGGGTCTGGGGGTGCAGCAGAGCCAGGGCTGGATCCACTACATGATCCACAAGCCAGAGCCGCATATATTGCTTTTCCGAAGACCTCTTCCAAAGGATTGAGTGGAAATCATCTTCCACGTCCCGGAAAACCGCCTCAGTTGAATTGTATGGTCTTTGTTGACTAAACAAGATGTACATCTCTCCATGTGTTTTGGTGTATagaatagaccatttattttcagtttttttaaaCTCCTCAAAATATTGGCGGTATGATAGAGGTAGCCCAAGGAGAGTGGAAGGCAGAAGGCTCGGCCCTGACTAAGAGATGGTGAGCAGTTCTGCTTTGATAAGTGGCAACAATATGAAGATGGAATTTCTCTCATGAGACATTACCGAGTTTGAATAACATTTGGTACACTTTTATTGATGTTTACTTGTCAATATATGTTGTATTAATGAGCATAGTGGtcaaatgtagtttttttttttt

Function

NR:

description
cyclin-dependent kinases regulatory subunit 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603850.2 False 1974 mRNA 0.42 3 64243519 64246283
TU483438 True 719 lncRNA 0.40 3 64244735 64246244

Neighbor

gene id symbol gene type direction distance location
LOC110522984 cssa23h19orf60 coding downstream 74145 64158413 ~ 64169374 (-)
tmem59l LOC106613787 coding downstream 99733 64132577 ~ 64143786 (-)
ssbp4 LOC106613785 coding downstream 181236 63929231 ~ 64062283 (-)
fkbp8 LOC106613784 coding downstream 317934 63912451 ~ 63925585 (-)
LOC110524308 LOC106613783 coding downstream 331917 63869346 ~ 63911602 (-)
LOC118964635 LOC106613472 coding upstream 32331 64278614 ~ 64283386 (-)
LOC110522986 LOC106613472 coding upstream 37461 64283744 ~ 64297376 (-)
LOC110524322 LOC106584412 coding upstream 132767 64377557 ~ 64382546 (-)
LOC110524323 LOC106613797 coding upstream 160946 64407229 ~ 64416757 (-)
trnaq-uug NA coding upstream 268468 64514751 ~ 64514822 (-)
G426865 yo84 non-coding downstream 3333 64239903 ~ 64240186 (-)
G426864 NA non-coding downstream 5598 64237630 ~ 64237921 (-)
G426851 LOC106613471 non-coding downstream 12479 64229108 ~ 64231040 (-)
G426842 LOC106613471 non-coding downstream 37701 64201240 ~ 64205818 (-)
G426777 NA non-coding downstream 152783 64090430 ~ 64090736 (-)
G426909 NA non-coding upstream 75303 64321586 ~ 64325607 (-)
G427005 NA non-coding upstream 223819 64470102 ~ 64474522 (-)
G427023 NA non-coding upstream 257824 64504107 ~ 64504495 (-)
G425810 LOC106613766 other downstream 940125 63300924 ~ 63303394 (-)
LOC110524282 LOC106584262 other downstream 983050 63257597 ~ 63260481 (-)
G425647 NA other downstream 1343016 62894659 ~ 62900503 (-)
G425612 NA other downstream 1393272 62850004 ~ 62850247 (-)
LOC110524277 LOC106613757 other downstream 1435397 62803832 ~ 62808176 (-)
G427287 NA other upstream 320398 64566681 ~ 64568380 (-)
LOC110524330 LOC106613802 other upstream 455591 64701867 ~ 64810664 (-)
LOC110524332 LOC106613803 other upstream 658762 64903039 ~ 64911196 (-)
G427902 ubxn6 other upstream 753425 64999708 ~ 65011598 (-)

Expression


Co-expression Network