LOC110524322 (LOC106584412)


Basic Information

Item Value
gene id LOC110524322
gene name LOC106584412
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64377557 ~ 64382546 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110524322
TACGGGATGAACCCGCCCTATTCCAGGTTGGGGAGAAATGAGTTGAACGTTTCAGAGAAGTCACAGAAGGACCACTAAAAAGTTTGACGCATGGAGTTGTGGGCTTTATCGGAATGAAACTCTAGCGGGAATTAGTCTACAATAAGCTTTATTTAGATTGTCCGGAATAAAATATGGAATCGATGCCACGACGCAATGAATATTTGGTTATTGAAGCACCACTTTTTTAATGACCATATCTGTCAAAAAGCTATAGAAAATATCCATATGCTACAAATTATCTGCGATGGAGTTGTAAATTATCTGACAGCTCCCAATAAAGAGTGTGATAACAACAGTGCCAGATGTCAGTAGATCCTCTGTCTGCAGTCTGCTGTGTTGTGGCGCCCTCTGCTGGGTGAAGGGGGAAGGCCAGGGCCAGGCAGGATGGAGAATGTGTTTGAAGAGGGGATGAACCCTGTGATCGTGGCCCACTACAACCACTCTGGGAAGTGGGGTCGGCCGAGGAGCAGTGGGGTCTGTAAgactgctgtcctcctcctcatctGTATCCTAATCGTGCTGGAGAACGTTACAGTGCTGCTGGCGTTATGGAGGAACAAACGCTTCCACAGCCGCATGTACTTCCTCATCGGTAACCTGGCCCTATCTGACATGCTAGCCGGGGTGGCCTATGTGGTCAACATTTTCACCTCTGGCGGCAAGACCTTTTTTCTGACACCGGCCCAGTGGCTGGCAAGAGAGGGCAGTATGTTCGTGGCCCTCAGCGCCTCCACCTTCAGCCTGCTGGCCATTGGCATCGAGAGACACATGACCATGGTGCGGCTGCGTCCGTGCGAGGCAGCGGGACGGGGGAGGTTACTGGGCCTGCTGGGGGCATGCTGGGCCGTGTCGGTGCTGCTCAGCGCCCTGCCCTCCCTTGGCTGGAACTGCCTGGAACACCTGGCCTCCTGCTCCACCGTGCTGCCCCTCTATGACAAGAGCTACGTGGCCTTCTGCATCAGCGTCTTCAGCGCCCTGCTGGTGGCCATCATCATCCTCTATATCCGCATCTACCGCCTGGTGACGTCCAGCGGGCGGAGGGTGAGCAGCAGGCCCTCGGAGCACTCACTGGCCCTGCTGAGGACGGTGGTAATAGTTCTGGGGGTGTTTGTGATGTGCTGGGCCCCActgttcctgctgctgctgctggatgTGGGCTGTAGCCCTGAGCGCTGCCCAGTGCTCTACCATGTAGACTGGTTCATCGCCTTGGCCGTGCTCAATTCAGCCGTCAACCCCCTCATCTACACATTGTCCAGCATGGAGATGAGAGCAGCCTTCTTCAGGCTGCTGTGCTGCTGTCAGCCTCACCTGGAGGCCCCAGCCTCCATGGCAGGCAACCCCCACCTGGGGACAGTCATCCCCACGGCCGAGAACAGCAGGTCCAGTGTGGGTGGAGGAGGGAGTAGGATAACGGGGGCTGCCAAGTCTCTGACCCGGGGGAAGGTGACCACGCCCCTGAACTCTAATAACCAGGGCCGACCGACCTGGTGTCAGCGGTGCTGGTCAAGGCTGGTGCACTGCCGTCCCTCAGCAAATTCTGACTTGACAGCTAATTCACTGTagactggtcctagatctgtatgTGCTCTAGTAGTCTAGCCAACTCCTCTGACTATCGTTATCATGCAATGTCTGTCATAGTTGGCTAAAGCACATGCAGATCTTGGACCAGGCTAGAATCACACTGCATGGGTAACTGGCAATGCTGTGAGTGGGCATGGTACAGGCATGGACACTGGGGCTATTTCAGTATGCATTGGTGAAAGTATTGACTGAAGAGACCTTTGGTAGACACTCAGATGAGGTTTGTACTGATGAACTTGCTGTAAAGCAGGGGTTCCCACGTTGTTTTGGCCCGTGACccctttttaaaacttttttattgGGTCTATGagagtctattacaaatcagtctgacagtatTTCAATCTGAAGTGCCTGAAGTGgctctgtcactcagaaatgtATTCCAGCTTCTGCCTGCCAGCTGTAACACTTTGTGTAGGCTATCTGCCCCTCCCCCTTGaagcataggttactgtagcctactgacgatGTTACAAGAGTAATTCAGAATTTAGAGAGATATGTTTATTGGAGAAGAATGGattgactttttaaaatgttagttaaggatactatagttatcacaTTTCACAATGGATTCATTAACTACAAAAAAGGTAAGACGTGTTTTTAATTCTAgtgctgctctgcacacacaagctagctagctaacgcttgCAATGCTCCAACGTTAATAAACCAACTCGGAAGTTGAAAGACATTTAAAGTTCCTCCATAGAACCCGCTCCTCCGTATAGGTATAATTCTgggggcctaattcagataatgcatgtcattaCAAGATGCCCAGTGCTTCAAAGGAAgcttcctccattctctctcaccctcaaAATTGATGTTGCATCTTGTGTcctacactgtgtgtgtttgtctttcattGAGATTAAACCATGCTGTTAAAATGTGCTCTTAACAACTTTCCTGTACAGCTAAAATTGCTTACACGTTCCACAACAAGCTGCTTTATCCTCACTGATTGTTGAAGTAATTTAATGTCGAgctaaaggtaaaaaatatatacactacaaaatatgtggacatcccttcaaattggtggatttggctatttcagctacgCCCTTGCTGACCAGTGtagaaaatcgagcacacagctaaGCAATCTCTGTAGACAAACATTttcagtagaatggcccatactgaagagctaaGTGACTTTCAATATGGCAACGTCATAAGAttccatctttccaacaagtcagtttgtcaaatctgggtttggcagatgcaaGGATAACgctagtgccaactgtaaagattggtggaggaataatggaataatggtctggggctgtttttcatgg
>TU483647
GAAGGTGACCACGCCCCTGAACTCTAATAACCAGGGCCGACCGACCTGGTGTCAGCGGTGCTGGTCAAGGCTGGTGCACTGCCGTCCCTCAGCAAATTCTGACTTGACAGCTAATTCACTGTagactggtcctagatctgtatgTGCTCTAGTAGTCTAGCCAACTCCTCTGACTATCGTTATCATGCAATGTCTGTCATAGTTGGCTAAAGCACATGCAGATCTTGGACCAGGCTAGAATCACACTGCATGGGTAACTGGCAATGCTGTGAGTGGGCATGGTACAGGCATGGACACTGGGGCTATTTCAGTATGCATTGGTGAAAGTATTGACTGAAGAGACCTTTGGTAGACACTCAGATGAGGTTTGTACTGATGAACTTGCTGTAAAGCAGGGGTTCCCACGTTGTTTTGGCCCGTGACccctttttaaaacttttttattgGGTCTATGagagtctattacaaatcagtctgacagtatTTCAATCTGAAGTGCCTGAAGTGgctctgtcactcagaaatgtATTCCAGCTTCTGCCTGCCAGCTGTAACACTTTGTGTAGGCTATCTGCCCCTCCCCCTTGaagcataggttactgtagcctactgacgatGTTACAAGAGTAATTCAGAATTTAGAGAGATATGTTTATTGGAGAAGAATGGattgactttttaaaatgttagttaaggatactatagttatcacaTTTCACAATGGATTCATTAACTACAAAAAAGGTAAGACGTGTTTTTAATTCTAgtgctgctctgcacacacaagctagctagctaacgcttgCAATGCTCCAACGTTAATAAACCAACTCGGAAGTTGAAAGACATTTAAAGTTCCTCCATAGAACCCGCTCCTCCGTATAGGTATAATTCTgggggcctaattcagataatgcatgtcattaCAAGATGCCCAGTGCTTCAAAGGAAgcttcctccattctctctcaccctcaaAATTGATGTTGCATCTTGTGTcctacactgtgtgtgtttgtctttcattGAGATTAAACCATGCTGTTAAAATGTGCTCTTAACAACTTTCCTGTACAGCTAAAATTGCTTACACGTTCCACAACAAGCTGCTTTATCCTCACTGATTGTTGAAGTAATTTAATGTCGAgctaaaggtaaaaaatatatacactacaaaatatgtggacatcccttcaaattggtggatttggctatttcagctacgCCCTTGCTGACCAGTGtagaaaatcgagcacacagctaaGCAATCTCTGTAGACAAACATTttcagtagaatggcccatactgaagagctaaGTGACTTTCAATATGGCAACGTCATAAGAttccatctttccaacaagtcagtttgtcaaatctgggtttggcagatgcaaGGATAACgctagtgccaactgtaaagattggtggaggaataatggaataatggtctggggctgtttttcatggttttggcTAGGCTCCTTGGATctaatgaagggaaatcttaacgctacaccatacaatgacattctagatgattctgtgcttccaactttgtggcaacagtttggggaaggccctttcctgtttcagtatgacaatgcccttgcggctgaatggaagcaagtcccgtagcaatgttccaacatctagtggaaagccttcccaaaagagtagaggctgttatagtagcaaaggggggagcaactccatattaatgcaaatgattttggaatgagatgtttggcgagcaggtgttcacatacttttggccgTGTAGTGTatatttcagaggtttaaaaaaGAACCGAAAGGAACCATATAAACGGGTACTTTTTGGGGTTTGAAActgttcagaactttatttttctGGTCGAAACATTGGAACAGAACGAAAACAAATTgattggaaaataattttggttccTAACTCGtggtttgaagtgactgaaatgcatcagaaaggtattggaaagttcagaagatcatcaggcaataatgttgatgatgttgatgatgtctGTGTAGAAAATAACATCATTGTTGAGGATGTTCTTTTCTCCCCCAATCTAATTTAGTGCCTGGCCTTGTCCACTCGGTTCTAACTGCTTATGGGTATTGTACAGGGAAACAGTACAGTACGTACGTACCTTTGTGTTCCTGTGAGTCTTATCTTTCAGATTttgtaggaagaaaacagaaaccactctgtttattacaaccgcATCTAGCGGCTACTCGAGGTTACTGATATAACCCCGGTTCTATGAACCAAGCGCGAATGCTTCATTAATAAGACTGCAAAGCGAAGGGATGCTAAGGATATACTCTTACCATAGCTCATCTAAAGCCACTATTTTGCAAAGACATTCAAATGACTCACATTGAACCTTTGGGCATGCCTTGTATATTAATTTACTTAATATTTCATAACTACGGAACACAATGAAAAATTTTCCCACAAGACATGTAATAGAGCATACTATAGCTTTATCAACTATCTATAGTGTGGGAAAAGTGGATTAATTGTAATAaactgtttgtatgtgtgcaaTAGAGGATGGGTAGTTTGCAAATGAAAGTAGGATCACTGTGTATTGcacatacagtgtatatatatatattttccaatGCACCTGCCTTTCTCTTTCTAGGACAGTTCAGTatatttattttcaatgaagACTAGGCCTTCCCGGTATGATGAACTGTGTACTAATCCATTGTGTTTACACCTTAAATGGTACAGTGAGTCAAATACTGATTTTGTAATGATTTGAAGTTTGCTGTCAGAGTAAAGAACATGTGTCAATGTTGGTTCTGGTTCCTCTCAGCAACATAGATACAAGTCATTCACGCTTCCACTAACCACTAGAGAGTTGTATTACAATTACCTTTACATCTTGTGTGGTGTCTAAATACCAATTGAATAAAAACT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110524322 False 2954 mRNA 0.49 2 64379050 64382546
TU483647 True 2941 lncRNA 0.40 2 64377557 64380519

Neighbor

gene id symbol gene type direction distance location
LOC110522986 LOC106613472 coding downstream 81674 64283744 ~ 64297376 (-)
LOC118964635 LOC106613472 coding downstream 95664 64278614 ~ 64283386 (-)
LOC110524318 LOC106584418 coding downstream 132767 64243519 ~ 64246283 (-)
LOC110522984 cssa23h19orf60 coding downstream 209676 64158413 ~ 64169374 (-)
tmem59l LOC106613787 coding downstream 235264 64132577 ~ 64143786 (-)
LOC110524323 LOC106613797 coding upstream 24683 64407229 ~ 64416757 (-)
trnaq-uug NA coding upstream 132205 64514751 ~ 64514822 (-)
LOC110524326 LOC106613800 coding upstream 185938 64568484 ~ 64644074 (-)
LOC110524329 LOC106613801 coding upstream 281781 64664327 ~ 64701395 (-)
LOC110524330 LOC106613802 coding upstream 319321 64701867 ~ 64810664 (-)
G426909 NA non-coding downstream 53443 64321586 ~ 64325607 (-)
G426865 yo84 non-coding downstream 138864 64239903 ~ 64240186 (-)
G426864 NA non-coding downstream 141129 64237630 ~ 64237921 (-)
G426851 LOC106613471 non-coding downstream 148010 64229108 ~ 64231040 (-)
G427005 NA non-coding upstream 87556 64470102 ~ 64474522 (-)
G427023 NA non-coding upstream 121561 64504107 ~ 64504495 (-)
G427030 NA non-coding upstream 126999 64509545 ~ 64509764 (-)
G427033 NA non-coding upstream 127229 64509775 ~ 64510050 (-)
G425810 LOC106613766 other downstream 1075656 63300924 ~ 63303394 (-)
LOC110524282 LOC106584262 other downstream 1118581 63257597 ~ 63260481 (-)
G425647 NA other downstream 1478547 62894659 ~ 62900503 (-)
G425612 NA other downstream 1528803 62850004 ~ 62850247 (-)
G427287 NA other upstream 184135 64566681 ~ 64568380 (-)
LOC110524332 LOC106613803 other upstream 522499 64903039 ~ 64911196 (-)
G427902 ubxn6 other upstream 617162 64999708 ~ 65011598 (-)
G428132 NA other upstream 987570 65370116 ~ 65382590 (-)

Expression


Co-expression Network