LOC110524324 (LOC106613796)


Basic Information

Item Value
gene id LOC110524324
gene name LOC106613796
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64416798 ~ 64448606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603861.2
tgtgtgtctgtgtgtgtgtgtgtgtgttagctggtTCGATGGGCTCTGGAGATCACAGACGCAGCCTAGTGGAGATCCTGAGGCAGGGCTATGAGGGGGCGGAGGAGGAGTCCAGGGCCCTAGTGGAACTGGAGAAGAGCCTAGGTGCCGCCCAATGAAGATGGCAGCACGCCCCCACACTGGCAGTGAGATGCCCCTGGAGGAGCTGCTGGCGCTGTATGGCTACGAGGTGTCTGACCCCCTCCTACAGCAGGAAAGGGAGCCCAATGAGCTGTCAGCCAGTCTGCCTGACATGACACTGGACAAGGACCAGATAGCTAAGGATCTGTTCTCAGGAGAAGATGAAGAGGAGTCATCAGCTGATGACCTCACTCCCTCTGTCACCTCCCATGCCTCCGACCTCCTCCGCCGCCACCTAAGAGCCCATTCCCTAGCAAGTGGAGACAAAGGCACCTTAGTCAGCACCTCAGAAGAAGACTCAGACAATGATGACGACACCTCCATTCCCTCCAATGATGGACGCAAGGACATCATGGTGGGCTCAATGTACCAAGCCAAAATCCCTACTCTCAGCCTATACTCAGACCAGGAGAGAGTCTATGAGAATGAGGACCAGCTCCTGTGGACCCCAGACATGCTGTCAGGCCATGCTGTAGAGGAGTTCTTACTGAGTGCCCAGAGATGGGGAGGCCAGGAGGGCACTAAAGACACCCTTATCACTGGGGAATTAATCAAAGACAATGATCAGGCTCTGTATGAGCTGGTGAAATGCAGCTTCAATGCAGAGGAGGCACTGAGAAGACTGCGCTTTAATGTGAAAGTATTCAGCGAGGAGCTGTGTGCCTGGAGCGAGGAAGAGTGTCGAAACTTTGAACATGGCTATCGAGTTCATGGGAAGAACTTCCACCTCATTCAGGCCAATAAGGTACGCACACGGTCGGTGGGGGAGTGTGTGGAGTATTACTACATGTGGAAGAAGTCGGACCGCCATGAGTACTTTACCCAGCAGACCACCAAGCTGGGTCGCAAGAAGTACAGTCTGCAGTCAGGGAACATGGAGGATGGAGAGCAGGATGGAGAGGTTGGGGAGATGGAGGGGTGTTCCCAGATTGAGCCCCACTCACCCCCACCAGTCACGGACCTGGACAAGCAAGATGATGaattgcagatggaggtgttggAGCTGTGTGGTGCTCCTTGTCCCAGTCCAAGCCCACAGAGGGAGCAGCTGTTCAGCCACTtatctccactcccctctctgaaGGACCTGCAGCAGGAGCCCTCTCTGAACTGTCCTAGCCCGGTCCGCTGTCCCACCTCTCCCCATGCCCAGCTCCACCCCTCCCCCCGGCCCAGCGGCAGCCCCACATCCTCCCCAGCAGAGCCTCATCTCCTGGGTTCTGGCTTCTACCAGCTGCAGCTGGGGCCCTTCCTTCCAGACGGCCTGTCCATGGGGCCAGAGGGTGGGGCCTCTCAGAGGCTGAAGGTGGACTTCTCCCTGCCCTCCGTCCCCCAGCCCCCGCCCTTGCCTGCCATTGCCCCATCCTCCTCCGTCACTTCTGACTTTGGGGCCATCAGCAGTTACCTGTGTCCCTCGGCCCTGTGCCCCCCTCCCGTCCAGCACTCCGGCTCGCTCACCAAGTGAGGGGAGGAAGAAGGGTGTCTTTACCCTGGAGAACATTCCAATAATGCCTGAGTTGTTTGTACTTCTAAGTACTGCCAGTTGAAGCTAACTTGGACCAGAGCTCACCCATGTGATGGTGTGAAGCTCCCCAGGAGAGAAACTGTCTTTTTGCCCGGGAGATAGGCCTACCTGTATCAGTGTTTACTAGGGGACTCCCACTGCTCACAAGCACAATGGCTTACCTACCTGTCTATTCTGGAAGGGCAGTAGTTCTACGGAGACGTTCTTAGAGAATTCTTAGATATAATGTTGGGACTGGAAAAGCTGGTGGGCTCGTTGATGGCTCCAAGGCCAAAACAGTTAGCCTGATGTTTGTTGCAGTGGCCTCATTCAGAGCAGAACTAGAGACTGTGATTTAACCTCCCTCACTGGTTTCCCAACTTTTACTGGGAACAGTGAGCAGCAGACAGACCGCATGACCTGGAATCCATCATGCTGTATTATAGCAGATGTCCACGAGATGTTCTCATTCTCTATCAGTTCTGATAAGGCTGTTTTTAGAAGCAGGGTTCAGTCTGCACTTGTATGACATCACCAATCTGACTGTGGACCTCTTAGGTAGGATCTGCCTCCCTGGTTCACTGTGAGAGCTTCCACCTCTCTTGAACATCTACAACTGAAACTGAAGGTGTTGTATACAGTACGTTTAAGAGGAAAGATCTGTATAGGAATACCATGAAACTGCTTTTGAGATTGtcacaatgtttttattttattggtCTTTGTTCCCAGTTCAGGTATTCATTGGCAGGTTTGCAATAAGGAACCTGAGTTTGTGATGGGAGTCCTTGTGTTCTCTCTTTCCAGTTTATGTTGACATTTGAAGGTCTTGTACAGTACCAAACTCCCACAATTGCCTGACAACCACGGTAGGCACATTAGCCTGTGTTTTGCGCATTATTGTACATGCTACTGTAGGTAAGTCACTGAATACACAGGTACTGTAGCCTCTGGCTTCTTCCCTGTACCTCAACTCCAGTTTTTGTGTGATTTAAGGTTTGAATATTGCCCTGAACCACCCATCCGACCTTGTGGAAAAAGCCCAACGGCATTGAAGTACAAAGACCCAAAAGGGGTGTGTTCAGAAGGGTGAAACCTTATGAACGTTGCAGATGGAGAATGTGATATACAGAGCTAACGCGCTTGCTTATTCCGTACCGTTGCACCCTCCTGAACAGACCCCAGGTTTCACTGATGCTGTACTGTATTCTGCCACTAGAGGACCTTGGCTATCGCCTAGTCTGAAGAGAGCCTGCCTGCTTCGTTCCCCCTGCTCAGGGGGAGAGAATCTGTCCCCTGTGCTCTCTGTCCCGATGGCAGGAAAACTCCATTTCTTTATTTATTCCCCATTTTCTATTTTTATAGGTGGGGTTTTCCCTCTACTCCCTGCTCTGACCTTAGCTGTTCTAGATCGGTTTGTTTTTGTTCAACCGTTTACAGGAGGTTCTGGACGTTGACTATCGGGACAGGAAGGGGAGTAGAAACACTGCCTTTTGTTTATTTTTCAGCATTTATATCATACTGCTTCTGTTTATATTGGTTTGTAATTATAATTGttatattttgtaaaaaaaaatatattaaaaatgttGACAATTAA

Function

NR:

description
mesoderm induction early response protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603861.2 True 3284 mRNA 0.51 11 64416798 64448606

Neighbor

gene id symbol gene type direction distance location
LOC118964637 NA coding upstream 78850 64333957 ~ 64337948 (+)
LOC110524320 LOC100196527 coding upstream 91190 64297442 ~ 64325608 (+)
shc2 LOC106613792 coding upstream 140839 64247497 ~ 64275959 (+)
LOC110522985 NA coding upstream 172008 64243153 ~ 64244790 (+)
LOC110524317 LOC106613471 coding upstream 179710 64184447 ~ 64237088 (+)
LOC110524325 lpp2 coding downstream 12329 64460935 ~ 64494141 (+)
tle2a LOC106613798 coding downstream 71691 64520297 ~ 64568404 (+)
LOC110524331 LOC105011595 coding downstream 362635 64811241 ~ 64842855 (+)
LOC110524337 ubxn6 coding downstream 551060 64998569 ~ 65011606 (+)
LOC110524338 LOC106584398 coding downstream 575838 65024444 ~ 65028828 (+)
G426467 NA non-coding upstream 154177 64261154 ~ 64262621 (+)
G426465 NA non-coding upstream 156057 64260502 ~ 64260741 (+)
G426458 NA non-coding upstream 166294 64250142 ~ 64250504 (+)
G426453 NA non-coding upstream 174601 64241944 ~ 64242197 (+)
G427024 NA non-coding downstream 57611 64506217 ~ 64506421 (+)
G427031 NA non-coding downstream 61285 64509891 ~ 64510217 (+)
G427120 LOC106613801 non-coding downstream 213562 64662168 ~ 64668926 (+)
G427121 NA non-coding downstream 253303 64701909 ~ 64706624 (+)
G427157 NA non-coding downstream 260372 64708978 ~ 64709770 (+)
sac3d1 sac3d1 other upstream 237412 64177028 ~ 64183138 (+)
nfil3-4 LOC106614010 other upstream 732559 63676409 ~ 63684848 (+)
G425224 NA other upstream 1365268 63045090 ~ 63051530 (+)
LOC110524265 LOC106613745 other upstream 2109861 62283054 ~ 62327772 (+)
G427476 NA other downstream 543495 64992101 ~ 64997138 (+)
G427747 NA other downstream 1005250 65453856 ~ 65521380 (+)
G428696 NA other downstream 1693473 66142079 ~ 66142605 (+)
G429156 NA other downstream 2533343 66981949 ~ 67048164 (+)

Expression


Co-expression Network