LOC110524332 (LOC106613803)


Basic Information

Item Value
gene id LOC110524332
gene name LOC106613803
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64903039 ~ 64911196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603875.2
TACTCCTCAGCACTTGCCCGTTTACGTCACTGGCTATAGACCAGTGCGCCACGGTTCAGTTTAATAGAATGGTGTCACTGGCTCTCTAGACTAGGATATAATAGTTTTCTCTTATTGGTCGGCTCCCAACATCGCCACCGGGAGAGTGTATAAAATGCATCATAGTCGCTCAAGAAGAGCAAGTCCATCTCTGTTCTCTGGGTTGCAGAGCAGCCAGCCACAGCCAgagcgagccagccagccagccagcctagtTCCGCAAACAGTGTGAGATCCAGAGGAGGCGAGAGAAAACACCTGTTTCGGAAGAATCAAGTCGACAAAGCAGCCTCCACGTCTTCAacagagaaacacccCCGTATCTCACTTGCTGAAGCCCAGTGGGACCATGTGGGTTCTGGACAAGATCCGTGGGTCGGTAGAAACCACTGTACTCCGGAGGGGGGAGAATGGAGACAAGGATGGCAATACTCCAGCCTACAGCAATGTTCTCACCCCTGATAAGATCCCTGACTTCTTTATTCCCCCCAAGCTGGTCTCCTGCCCCCCAGAGCCTGAGACCCTGGACGTCGTCAAGCCCAAGGAGGGCCTTTGGCTCTCGGCCTCTGAGCAGACCATTGGCAGTAAGAAAATCAGCAGTCCTCAAAGTCCTCGTCTGGTCGTCAAGCTGGCTGGGGACACCAAGAACCTGCTGAGGGCAGCAAACCGTCATATCATCCAGATAGAGAGCGCTGATGATGTGGTGGCAGGGGACACCAATGCTGACCCTCAGTCTCAGACTGCAATGTCACTGCCCTACGTCCCCAAGACCCAGACCTCCTATGGTTTTGCCACTCTGATGGAGAGCCCCCACACCCGCCGCAAGGAGTCGCTGTTTCACTGTGACCAGACCAGCCCCCTGACCTCCCCCAACTGCCAGCGGAAGGGGAAGAGCAGCGTCAGCGAGGGCAACCACCTCAACCCCCCTGTCTTCAACGCCTCTCACAACCCGTACCGCTACTTTAGTGGAGGGGAGAGTGACACCTGTTCCTCGGCTGAGTCCTCTCCCTTCAGCTCCCCGCTGCTCTCCCGCTCTGCCTCGCTGCTCAAGATCTTCACACATGAGACGCAGGCCAAGGTGGTGAAGGCCAAGAGCAAGTTTGCCCGCCACAGCTCCTTATCCACAGACGAGTGCAGCTCGGCCGAGCCCAGTCCCAATGTGCCGCGGcgtctccactcctcttccctcCACGGTAGTGGGCCGTCGGACCATGAGCACACCATTAACCTGCAGAATGGCGGCAGGGTGAGGCTAAGCGCCAACTACGATGCAGGCACAGCTCGCCTGCGCATCCGTGTTCTGGCTGCCGAAGAGCTATACGACAAGGTGTACGACATCAAGAGCATCAACTGCTGCGTGTCGCTGTACCTGAACCCTGGCAAGCTGCAGAAACAGAGGAGCACTATCATCAAGAACAGCCGGAATCCTGTGTTCAATGAGGACTTCTTCTTTGACTCTGTGACCTCCGTGCAGGTGAAGAACCTGGCAGTGAAGATCAAGGTGGTGAATAAGGGCACCAGCCTGAAGAGAGACACTCTGCTCGGGGAGAGAGAGATCTCTCTGGAGAAGCTGATCCATGACCTCTAGATTTGTCCTGGAGATACAGAACAGAACTTTGACTGACACTGAATGAGACTATGAATGATAAAGTGCATGAATGGAAGAGTAGTTGGTATTGATGTTTGCTTGGTGCCCCACAGAGAACTGTCTGAAAGGAGCAGTTCATTTATAGTCACTGACTGTTTGGTCTGGTCTAGCAGCTCGTCTCTTAGCTGGTCACCTCCTCAACCTTCTGTTCCCTGAGCCTGCAGCCCTGCACAGCCCAACTTCCAGATCATGTGGTGGACAATCAAATATGGCACAGGTCAAAACTCTCTTGATCTCAACGTTTTATGTTGCATAGTTGTAACTTAATGCGACTCATCCTCAGACGATTCAGTGTTAATTcagttcagcactacaacactttTATGGATCAGTGGGTCTACTATATCCTGATTGTTGTTGCCATCTACAGTACCACCTGGAGGGAGGACCAATCTGTGGTTTGACCACAATGTCCCAAACCTGGAGGATAGAGATCAGACATCCCCGTATGCATCCTCATCCGCTTGGCATGAATATGTAAATGCAGTTATACATTAGCAGTTTGTACATCAGTTTCATAACACTCACAAaccatagagagagggagaatgcatGTCATTTTAAAGGGTGTTTACCAAGTGGTTGAACTTGATTTTATACATAAATGTGGTATTTGTGTGAGACATGACTCAGTATGGTGTATGTGTGATACAAGATACAACATTATGACTTGTTTGTTAATTGTCTATTATGTACTGCTCTCTGCTGGAGAGTGAATGATTGGCAGCCCCCCTGTGTAGACAAGCCACCAGATGAGTAGACTGAGAAAGGCAAAAAAAATATAACAGTAACACAACAATATTTAAGGATAGTATTTGTTTCTGAAGATGGATAAAGGCTCAACACATCGATCAGTCGTTGAGATATGTAGTCATTTAACCATGTCAGACatcactgttttacagtatgtaGCCAGTGTTTTTGTGGGTTACATTCCTGTTCGAACCTCGACTATACAAAAGCGCTCCCCAGCACCATTGCTTTTCTCCAAGCTTATACTTTATAAAACTCTTGTTGCTGTATGTGTGATCATTTTGTTATTGTGAAAAATCAGTATgatactataaaataatttatttgtGGGTGTTTACACTATCTATACCTGCTGTACATGGGAGTGTGCTCACTGAATTGTAACCAATCCCTTTTTTGGCTTACATCAGCATGACTAAGAAACATCAATATTGTCAGTAGATTTGATAAAACTTCATTTTAGTAGACCGGGTCAAAATGTAAGAAGGGCATTTATGATGAAAATTAATTTAAGTCAAAAAGTGGGTAGTATATTTTTGGGACTGCCGAACAAGGCCTATTTTTGTAATTGATTGTCTTTTTTAGTTTCTTATATACAGGACCAGTCTAaaatttggacacctactcattcaagggttgttatttatttgtactattttctacattgtagaataatagtgaagacatcaactatgaaataacacatatgag
>TU484689
TGGGTTGCAGAGCAGCCAGCCACAGCCAgagcgagccagccagccagccagcctagtTCCGCAAACAGTGTGAGATCCAGAGGAGGCGAGAGAAAACACCTGTTTCGGAAGAATCAAGTCGACAAAGCAGCCTCCACGTCTTCAacagagaaacacccCCGTATCTCACTTGCTGAAGCCCAGTGGGACCATGTGGGTTCTGGACAAGATCCGTGGGTCGGTAGAAACCACTGTACTCCGGAGGGGGGAGAATGGAGACAAGGATGGCAATACTCCAGCCTACAGCAATGTTCTCACCCCTGATAAGATCCCTGACTTCTTTATTCCCCCCAAGCTGGTCTCCTGCCCCCCAGAGCCTGAGACCCTGGACGTCGTCAAGCCCAAGGAGGGCCTTTGGCTCTCGGCCTCTGAGCAGACCATTGGCAGTAAGAAAATCAGCAGTCCTCAAAGTCCTCGTCTGGTCGTCAAGCTGGCTGGGGACACCAAGAACCTGCTGAGGGCAGCAAACCGTCATATCATCCAGATAGAGAGCGCTGATGATGTGGTGGCAGGGGACACCAATGCTGACCCTCAGTCTCAGACTGCAATGTCACTGCCCTACGTCCCCAAGACCCAGACCTCCTATGGTTTTGCCACTCTGATGGAGAGCCCCCACACCCGCCGCAAGGAGTCGCTGTTTCACTGTGACCAGACCAGCCCCCTGACCTCCCCCAACTGCCAGCGGAAGGGGAAGAGCAGCGTCAGCGAGGGCAACCACCTCAACCCCCCTGTCTTCAACGCCTCTCACAACCCGTACCGCTACTTTAGTGGAGGGGAGAGTGACACCTGTTCCTCGGCTGAGTCCTCTCCCTTCAGCTCCCCGCTGCTCTCCCGCTCTGCCTCGCTGCTCAAGATCTTCACACATGAGACGCAGGCCAAGGTGGTGAAGGCCAAGAGCAAGTTTGCCC

Function

NR:

description
C2 calcium-dependent domain-containing protein 4C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603875.2 False 3151 mRNA 0.48 2 64903039 64911196
TU484689 True 947 TUCP 0.58 2 64905045 64910998

Neighbor

gene id symbol gene type direction distance location
LOC110524330 LOC106613802 coding downstream 92375 64701867 ~ 64810664 (-)
LOC110524329 LOC106613801 coding downstream 201644 64664327 ~ 64701395 (-)
LOC110524326 LOC106613800 coding downstream 258965 64568484 ~ 64644074 (-)
trnaq-uug NA coding downstream 388217 64514751 ~ 64514822 (-)
LOC110524323 LOC106613797 coding downstream 486282 64407229 ~ 64416757 (-)
LOC110524333 LOC106613805 coding upstream 18648 64929844 ~ 64947418 (-)
LOC110524334 LOC106613806 coding upstream 28070 64939266 ~ 64982684 (-)
LOC110524335 LOC106584403 coding upstream 72145 64983341 ~ 64991018 (-)
LOC110524336 chaf1a coding upstream 100443 65011639 ~ 65022842 (-)
LOC110524339 LOC106613811 coding upstream 119283 65030479 ~ 65051482 (-)
G427386 NA non-coding downstream 122899 64779875 ~ 64780140 (-)
G427360 NA non-coding downstream 127578 64718887 ~ 64775461 (-)
G427037 NA non-coding downstream 389289 64513454 ~ 64513750 (-)
G427033 NA non-coding downstream 392989 64509775 ~ 64510050 (-)
G427909 NA non-coding upstream 15074 64926270 ~ 64926746 (-)
G427910 NA non-coding upstream 16576 64927772 ~ 64928219 (-)
G427906 NA non-coding upstream 82909 64994105 ~ 64997116 (-)
G427902 ubxn6 non-coding upstream 99357 64999708 ~ 65011598 (-)
G427287 NA other downstream 334659 64566681 ~ 64568380 (-)
LOC110522986 LOC106613472 other downstream 616680 64283744 ~ 64297376 (-)
G425810 LOC106613766 other downstream 1599645 63300924 ~ 63303394 (-)
LOC110524282 LOC106584262 other downstream 1642570 63257597 ~ 63260481 (-)
G428132 NA other upstream 458920 65370116 ~ 65382590 (-)
LOC110524398 LOC106613863 other upstream 1875855 66786837 ~ 66793995 (-)
lrrc7 LOC106613881 other upstream 2899409 67810595 ~ 67983549 (-)
bend5 LOC106584333 other upstream 3429008 68331871 ~ 68352828 (-)

Expression

LOC110524332(LOC106613803) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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LOC110524332(LOC106613803) Expression in each Bioproject

Bar chart with 21 bars.
LOC110524332(LOC106613803) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network