LOC110524333 (LOC106613805)


Basic Information

Item Value
gene id LOC110524333
gene name LOC106613805
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64929844 ~ 64947418 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603876.2
taagcaaatTTGTGCATAACGTtttagagaaatacgctttttgtgcatatgggacatttctgagatcttttggttcagctcatgaaacaaacactatgttgcgtttttatttttGGAGGCTATGTGTCATGTTTAACTTCGATTCCCAGAAAGCATTGCTAGCATTTCACTGCTCATGGCATCAAGCTTTGTGGGACCAGCTTAAGCGACTTCAATTGCGACACGGTGAAGCAGCTGCTGTAGGAGGGGAGATCTTTCCCTACTCTCTCGGACAGTCGTTCATTTGTTTGTGATTTCTAGTTTGCTTTGACTATAAACATTTCCGTTGCTAAAATCTGGCTTTGAGTCAATGAGGAAACGTTCCGTTGCCCTCCAGGGGAAGATCAACAACAGATTCGCGAGAAATGCTAGCAAGCTAGCGTTGGGTTGGTTGTAAGCGAGAGATTTATGGGTTTGTTCGATCACAGTGGAAGAGAACCGAACGTAATAACAGCGGAGAATTGTTGAGACTTTGTGGGGAAACGAGTGAACAATCAAACGGTTTCTGGGAGGGTGAtttaagtagctagctagctacattttataTAAAAAGCTCTAGATAGGTATTTTAAACAGATCGTCGCGGAATATGGCTCAGCATGGACATCATCATGTAGCCAGTTCCCAAAAAGCACTCATGCTAGAAATGAAAAGTCTTCAAGAGGAGCCAGTTGAAGGGTTCAGGATAACTTTAGTGGACGAATCGGACTTGTACAACTGGGAAGTTGCTATATTTGGACCCCCAAATACTCACTATGAGGGAGGTTATTTTAAGGCTCGGATAAAGTTCCCCATCGACTATCCCTACTCTCCTCCGGCCTTCCGCTTCCTCACCAAGATGTGGCACCCCAACATCTATGAGAATGGGGACGTGTGCATCTCCATCCTGCACCCCCCTGTGGACGACCCCCAGAGTGGAGAACTGGCTTCCGAGAGATGGAACCCCACGCAGAACGTCAGGACGATCCTGCTGAGTGTGATCTCTCTGCTCAACGAGCCCAACACCTTCTCCCCAGCCAACGTGGACGCCTCTGTCATGTACCGCAAGtggagagacagcaagggcaaGGACAGAGAGTACGCAGAGATCATCagGAAGCAGGTCCACGCCACCAAAGCAGACGCTGAGCGCGACGGTGTGAAGGTGCCCACAACCCTGGCAGAGTATTGCGTCCGCACCCGCGCCCCGCCCCCCGATGAGGGCTCCAACCTCTTCTACGACGATTACTATGACGACGAGGACCTGGAGGACGAAGATGAGGATGATGACGAGGACTGCTGCTACGACGAAGATGACTCGGGAACCGAGGAGTCCTGACGACCCACCATCGCCTCactaccccttcctctcccctgtcaCCCCCCCCTTAAACTGAACTCATACTCCAACCCCCCCCACAGTAGTGCAGCCACACCTGCACGCTAAACCCAGATGCATTTTGAAAGAAAGCTACAgatttagtttgtccattttgtttctggtgtctttaTTTTCCTGTCTGTGGAGTGTTAGAGCTAATGCTAGCTCTACAAATGATTCCCATGGTTTGCTCTCAATGACCGCTTGCTTTTTAAAGTTTTGGGTAAGGGCTCGGTCTCCTGTAGAGTGTGTATCCAGACACTGAGAAagtgtggagagagaggcctgAGATAGTAGTGTTCCTCTGAACTTGGTGACCTCTCACCTGGTTGACAGCCTTGCGATGCCGGCCAGCCTGCCTGTCACATGAAGCTTTCTGAGGTTAAGGGGACCCCTGACATTTCACTATTGGGTCTGGGGTTGCTCACAACTGTCTGCCACTGTCTACCTAGCTCCAGAGTCTAGTTTTACTGTATGAATTGGTGGTTTGTAATGATAAGGGCGTATTGCAGACAGTTGATGTTCTGATGCTGGTGTACTCTTTTGGAGACCtcatacattttagtcatttagcagacactattatccactgttttatttaactaggcaagttcgttaagaacacattcttatttacaatgacggtctaggaacagtgggttaactgccttgttcaggggcagaatgacatttcttaccttgtcagctcggggatttggtcttgcaaccttttggttactagtccaatgctctaaccactaggctacctgtgacttaattagtgcattcatcttaagatagctaggtcaCCACATCTCAGTCAAAGTAAGTacattttcctcaataaagtagccaAGTCTGTGCTAGACGCCcattttgttttatatatatatatatatatatattgttgggGTGGGGAgtatgggcagggactctgctgtcaaAGCTTCAAAGGGAAGCTGGTTCCGCCATTGGGGTActggacagagaagagctttgactataggggtgggagggccaaaaAACCAGAGGTGTAGGGTTTGActatagcctgaaggtagggaggggaacttcctcttgctgctccgtaggcaagtaCAGAAAGGCAGTGATctgagctgggggggggggggggtttacccATGGCCTGAACAACTGGGTTAAATGCACAGCTCCTAACTCTGATCACCACCTCATGGAATTCCTCACCACTGATCACTTAAAGATGGGAGTTGAGGAATAATTGTCTcaatgtgtgtatatgcatgtttGGGTGGTAGGTCATTATTTTATTCAAATGTAGTGCAGGAATGCTTTGCTACGAGAAAATGTTTGCATTAACTCAACATCAGTCCCTATGGCAAGTCTGTAACAGTGATGTCTTGCACATAAGCGATTTTGAATTAGTTGATTTGCTTAAACTCCTCAGTCACTTTACCAAACATATGTCTGTAGAAGTGCTCGCAACGGAAGTGGCTCCATCACACAGGATTTGACACATTAAATACAAACTATTTTAACAGTATTTAACACAACCCCACGTTTGTGTTGCTTCAGTAGTGTAAATGCTCATTCATCGTTGCGCCTTGACTATTTGATGGGACGTTTGAGAGAAGGGCATTTCCCATCGTAAGAATGCTAGGGATGTTGAGTTTTAGGTCATACAGCCATCCCACTAGCATGCCAGTGTCCGGCTCGGTATAGGGCTGTAGGAAGACACTTGATTCCCATATACTCCGTTATAACTAAGTTGAGTGGGCTTCTTTTGATGTCGTCTTCTACTTCAAAATGAGTAAGATGAGAGCaactgttttttttcccccttacATGTACTTAGTGATCTGATTCTTGACCTTTTGTTTTAAACACCATGGGGGTTATTCATTAGACTTAGTAGTACATTTACCACCATTTTATATTTTTTCAATTCAGAAACATTTAGGTATTCTACCTTATTTTTCCAATAGAGGACAATAGGTGATTTTACTGGGGGAACATGTACTCTTTGTGTTAACATCTTGAGTATAAAGCATGTATACATCAATCTAATCAGGAATTCTTAACTGTTTTTACATTCTACATATGGCTGTTGCGTTTCGTGAACAACTCCCATTTTGTTTTAAGGAAGTGGGATTTCATTTTGTGAAGTTGCCATTTTCTTCATCTACCGTGTGTTTCCTCCCAATGTGCTACCTTCCTTCCCATCCATACAGACTTTCTTTTTGGTCGTCGCATCACCGAGGGACCCCCGATGTTAGTAAGGAAAACAAAACCACAAACTTTTTCACATCGAAGTGAATCTCACCACAGCCTCTCACTGTGTGTGGACAACTGTCCCCCCCCCAACCTATCACCTCTGCTTCAAAGACTGTATACAATCTGGATATTTTGACGATcacttgttttattttttatgttgttTTTGGTTTGTAAATCTATTTAAAACCAAAATAAAGATCTTTCTTAGA

Function

NR:

description
ubiquitin-conjugating enzyme E2 R2-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K02207 UBE2R, UBC3, CDC34; ubiquitin-conjugating enzyme E2 R

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603876.2 True 3867 mRNA 0.45 5 64929844 64947418

Neighbor

gene id symbol gene type direction distance location
LOC110524332 LOC106613803 coding downstream 18648 64903039 ~ 64911196 (-)
LOC110524330 LOC106613802 coding downstream 119180 64701867 ~ 64810664 (-)
LOC110524329 LOC106613801 coding downstream 228449 64664327 ~ 64701395 (-)
LOC110524326 LOC106613800 coding downstream 285770 64568484 ~ 64644074 (-)
trnaq-uug NA coding downstream 415022 64514751 ~ 64514822 (-)
LOC110524335 LOC106584403 coding upstream 35923 64983341 ~ 64991018 (-)
LOC110524336 chaf1a coding upstream 64221 65011639 ~ 65022842 (-)
LOC110524339 LOC106613811 coding upstream 83061 65030479 ~ 65051482 (-)
LOC110524344 stap2 coding upstream 112748 65060166 ~ 65083747 (-)
LOC110524345 sh3gl1 coding upstream 143762 65091180 ~ 65109379 (-)
G427910 NA non-coding downstream 1625 64927772 ~ 64928219 (-)
G427909 NA non-coding downstream 3098 64926270 ~ 64926746 (-)
G427386 NA non-coding downstream 149704 64779875 ~ 64780140 (-)
G427360 NA non-coding downstream 154383 64718887 ~ 64775461 (-)
G427906 NA non-coding upstream 46687 64994105 ~ 64997116 (-)
G427902 ubxn6 non-coding upstream 63135 64999708 ~ 65011598 (-)
G427950 NA non-coding upstream 136841 65084259 ~ 65085437 (-)
sema6bb LOC106613817 non-coding upstream 234490 65181687 ~ 65333174 (-)
G427287 NA other downstream 361464 64566681 ~ 64568380 (-)
LOC110522986 LOC106613472 other downstream 643485 64283744 ~ 64297376 (-)
G425810 LOC106613766 other downstream 1626450 63300924 ~ 63303394 (-)
G428132 NA other upstream 422698 65370116 ~ 65382590 (-)
LOC110524398 LOC106613863 other upstream 1839633 66786837 ~ 66793995 (-)
lrrc7 LOC106613881 other upstream 2863187 67810595 ~ 67983549 (-)
bend5 LOC106584333 other upstream 3392786 68331871 ~ 68352828 (-)

Expression


Co-expression Network