LOC110524335 (LOC106584403)


Basic Information

Item Value
gene id LOC110524335
gene name LOC106584403
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64983341 ~ 64991018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603887.2
TCACGTGAAGGGGGGGGGGATGATTCTAGAAGGGGTACCTGAACGTACCCTCTTACTTTCACCCCCATATTTTTACTCTGTGACTGCGGTCGATTTCCTGTTCTCTTTATCTGTTTGTCAAGACAACATTCATActaaaaaacataaaataatcACAAACAACAAGTTATATGTTGTGGAAGACAGATATTTATGAAATAAATGTTTTACTTCGGAGCCAAAGCTTTTGATTTGATGTTACTATGCATTTTCTAATTAGTGGTCAGATTCAAATTAGGAAAACGATGTCGAATTTCCAGTGTACACATTGTAGAGTATGATTGGTTTGAAGAATGGAGTGAAAAGAAATTAAACCAATTATAGTGGCCAGTAGGCGGGATTTCCGCTCTGATAATCAAAGTTAGCGGAAGCTATTCTTATGAAGCTAACCGCCTCATCTCGCGCTTTGGGAAGCTAGCTTTCCAGCTAGCAAGCGTAATCGTTTTGCAGGTTTCATGTCGACCTGAAAACGGTGAAGAAGCGACACATAAAGACACCCAGAGTTCGCTAAAGAAGAAAGTAAAGGCTGCACAGAAGAGCAGGACAATGCCGCACAATTTCCAACCCGGAGACCTGGTCTTCGCTAAAATGAAGGGGTACCCCCACTGGCCAGCCAGGATTGAGGATGTAGCAGATGGAGCAGTAAAACCCCCTCCAAATAAAGTCCCCATCTTCTTCTTTGGGACCCATGAAACAGCATTCCTTGCACCAAAGGACCTTTTTGCATATGACAAGTACAGCGAGCGCTATGGGAAACCTAATAAAAGGAAGGGCTTCAATGAGGGCTTGTGTGAAATCCAGAACAACCCTCACGCCTCATACAGTGCTCCTGCACCTGTCAGCTCGTCTGACAGTGAAGCCAATGACGGTGCAGCAGGAAGTGAGGCAGAGGATGACGAGGAAGCAGTGGTGCCCAGGAAAGCATATTCAGGAAGTGAAGTAAATTCTGACTCAGGAAGTGAGGATcgaggaggggtgaagaggaaGGCCCCTGCTGCCAAGCGGCCCCCTGTGAAGAAGACCCGGGGTTCGTCCAGTGAccgggatggagaggagagtggCTCACCCTCGGAGCCAGACCCATCCCCTTCTGACTCAGACTCTGGGAAGAACAGTGACCAGGACTTCACCCCAGAGAAGAAGGCAGCAGCAGGCCGTGGTGGCGCCGGGAAGAAGGCTGGAGGTGGCAAAGGGAAGAAGGTGGTGTCGTCGGACTCCGACTCTGGGTCTCAGTCAGACAAGAAGAAAGGGGGCAGTGATTCAGAGGATCAGAAGCCACGGCCTGCTCTGTCTGGATCAGAATCCCAGTCTGGCTCCAAATCCGACTCTGACTCAGAGCCACAGCCACCTCAACGGAAGGCTCCTCAAGCGCGCAAGAAAGAGAAGCCTCCACCAAAGCCTCGGGGTGGACGGAAACCCAAAGCTGCCCCGGTCAGAGCACCGGCATCTTCCTCTGACAGTGATAGCGACAGTGAGCCGGACCGAGTCAGCGACTGgaaaaagagagatgaagagCGTCGGAAAGAGCTGGAGGAACGGCGGAAGAAGGAGCAGGCAGAGGAGATCCTCAAGTAtcgggagagggagaaggaagaagagCAGAGAAAGAAGGACAAGGAGAAGGGAAAGAGCAGTGGTGAAAACAGTTCAGATGAGGGTGTAGATCACCCACTGAAGAAGTCCAAGAAACCCCCACCGCCCCCCATCCCCGCCCCCTCCGACTCTGACTCTGGACCTGAGGTGAAAGCATCTGCAAAGCGTTCAGACAACCAGAAGAAAGGGAgaacaaagaaagagagggatcATGGTAAAGGCAAAAAGGAGAAAGATGTGAAGGAAAAGCGAACCCAGCGGTCAGAGGAGAGGCCCCGAGTGAGGTCCAAGCCTGACAAGCCCAAACGCAAACCAGAGAGACCTCCAGAGAGGAAAGCAGAGAAGAAAAAAGAGCCAACTCCAGACGAAAAGTTGCAGAAGCTCCACGCTGACATCAAGTTTGCACTGAAAGTGGACAACCCAGACATAGAGCGCTGTCTACAGGCCCTGGCGGAGCTGGAAGCTGTGCCGGTCACCAGCCACATCCTGCAGAAGAACTCAGATGTTATTGCCACGCTTAAAAAGATCCGTCGATACAAAGCAAGCAGTGACGTAATGGAAAAGGCCAGCCAGGTCTACAACAAATTAAAGGGGCAGTTTGTGGTCAAGTCTGAAATGCCAAGTAAACACAAAGCTGAGGGAAAGGAGCAGGAAGAGAATGGGAAGGAGACACCAAACACAGATGTAACACCTGTGAATGGGGAATCAGAAGTCCAGAAAAAGGAATGCACTGAGCTGGAGGATACCCCAAAGTCACCGGTCCAGGAAGTGAATGATGAGCATGTGGCGTCAAGCCCCAACAGGCGAAGTCCTGATAGTCCTGCTGAGCAGCAGACGAACACTGATGAAACACACCACGCTCTCTCTACAGAAACAGAACCGACAGCGATGGAGAGCTGAAGAACTCTGAAGAAAATGGAATACAATTGTTTACCACAGCTAAAAGGAAAGCTCACTAGTCTCGTGCCAGATACATGGCGCTCTGCAGACCACTTTGATGTTCGCCATTGTATTTTTCAATTTTTATAGGACACCTTGGCCCGTCCCCAATTCCTCCCCCTCAAGCTACCATGCTTTTTTTTCTGCCACGTTAACTCTAACTTTGGTCTTTCATACAGTATTTATAATGAGAGATTCCATTTTTAGCACTTCTAACAGGAAATCGAAGGGGGAGAGGAGTCTTGTTCTGCTTTGAAGTAACTGTACTGTCACGTTAGTCAAGGCATCTGTTGGCTTTGCTTGAGAATGATATTGAAGCCTACAGAACCTAGAAAAGGCTAATGGTGGATAAGTATGAGTCTGGTACTTTTTgtgagtttttatttttttatctggtCTGTTCTTATTAATCCAGTCGCATCATATAAATATTAAGCCAGTGAACGGAACCACATCACATGTTTTCCAATTAAGTTCCACCtgctttt
>XM_021603886.2
CGTTCACGTGAAGGGGGGGGGGATGATTCTAGAAGGGGTACCTGAACGTACCCTCTTACTTTCACCCCCATATTTTTACTCTGTGACTGCGGTCGATTTCCTGTTCTCTTTATCTGTTTGTCAAGACAACATTCATActaaaaaacataaaataatcACAAACAACAAGTTATATGTTGTGGAAGACAGATATTTATGAAATAAATGTTTTACTTCGGAGCCAAAGCTTTTGATTTGATGTTACTATGCATTTTCTAATTAGTGGTCAGATTCAAATTAGGAAAACGATGTCGAATTTCCAGTGTACACATTGTAGAGTATGATTGGTTTGAAGAATGGAGTGAAAAGAAATTAAACCAATTATAGTGGCCAGTAGGCGGGATTTCCGCTCTGATAATCAAAGTTAGCGGAAGCTATTCTTATGAAGCTAACCGCCTCATCTCGCGCTTTGGGAAGCTAGCTTTCCAGCTAGCAAGCGTAATCGTTTTGCAGGTTTCATGTCGACCTGAAAACGGTGAAGAAGCGACACATAAAGACACCCAGAGTTCGCTAAAGAAGAAAGTAAAGGCTGCACAGAAGAGCAGGACAATGCCGCACAATTTCCAACCCGGAGACCTGGTCTTCGCTAAAATGAAGGGGTACCCCCACTGGCCAGCCAGGATTGAGGATGTAGCAGATGGAGCAGTAAAACCCCCTCCAAATAAAGTCCCCATCTTCTTCTTTGGGACCCATGAAACAGCATTCCTTGCACCAAAGGACCTTTTTGCATATGACAAGTACAGCGAGCGCTATGGGAAACCTAATAAAAGGAAGGGCTTCAATGAGGGCTTGTGTGAAATCCAGAACAACCCTCACGCCTCATACAGTGCTCCTGCACCTGTCAGCTCGTCTGACAGTGAAGCCAATGACGGTGCAGCAGGAAGTGAGGCAGAGGATGACGAGGAAGCAGTGGTGCCCAGGAAAGCATATTCAGGAAGTGAAGTAAATTCTGACTCAGGAAGTGAGGATcgaggaggggtgaagaggaaGGCCCCTGCTGCCAAGCGGCCCCCTGTGAAGAAGACCCGGGGTTCGTCCAGTGAccgggatggagaggagagtggCTCACCCTCGGAGCCAGACCCATCCCCTTCTGACTCAGACTCTGGGAAGAACAGTGACCAGGACTTCACCCCAGAGAAGAAGGCAGCAGCAGGCCGTGGTGGCGCCGGGAAGAAGGCTGGAGGTGGCAAAGGGAAGAAGGTGGTGTCGTCGGACTCCGACTCTGGGTCTCAGTCAGACAAGAAGAAAGGGGGCAGTGATTCAGAGGATCAGAAGCCACGGCCTGCTCTGTCTGGATCAGAATCCCAGTCTGGCTCCAAATCCGACTCTGACTCAGAGCCACAGCCACCTCAACGGAAGGCTCCTCAAGCGCGCAAGAAAGAGAAGCCTCCACCAAAGCCTCGGGGTGGACGGAAACCCAAAGCTGCCCCGGTCAGAGCACCGGCATCTTCCTCTGACAGTGATAGCGACAGTGAGCCGGACCGAGTCAGCGACTGgaaaaagagagatgaagagCGTCGGAAAGAGCTGGAGGAACGGCGGAAGAAGGAGCAGGCAGAGGAGATCCTCAAGTAtcgggagagggagaaggaagaagagCAGAGAAAGAAGGACAAGGAGAAGGGAAAGAGCAGTGGTGAAAACAGTTCAGATGAGGGTGTAGATCACCCACTGAAGAAGTCCAAGAAACCCCCACCGCCCCCCATCCCCGCCCCCTCCGACTCTGACTCTGGACCTGAGGTGAAAGCATCTGCAAAGCGTTCAGACAACCAGAAGAAAGGGAgaacaaagaaagagagggatcATGGTAAAGGCAAAAAGGAGAAAGATGTGAAGGAAAAGCGAACCCAGCGGTCAGAGGAGAGGCCCCGAGTGAGGTCCAAGCCTGACAAGCCCAAACGCAAACCAGAGAGACCTCCAGAGAGGAAAGCAGAGAAGAAAAAAGAGCCAACTCCAGACGAAAAGTTGCAGAAGCTCCACGCTGACATCAAGTTTGCACTGAAAGTGGACAACCCAAATACTGCAATGGCGTTGTCTGTTCTGCAGGACATAGAGCGCTGTCTACAGGCCCTGGCGGAGCTGGAAGCTGTGCCGGTCACCAGCCACATCCTGCAGAAGAACTCAGATGTTATTGCCACGCTTAAAAAGATCCGTCGATACAAAGCAAGCAGTGACGTAATGGAAAAGGCCAGCCAGGTCTACAACAAATTAAAGGGGCAGTTTGTGGTCAAGTCTGAAATGCCAAGTAAACACAAAGCTGAGGGAAAGGAGCAGGAAGAGAATGGGAAGGAGACACCAAACACAGATGTAACACCTGTGAATGGGGAATCAGAAGTCCAGAAAAAGGAATGCACTGAGCTGGAGGATACCCCAAAGTCACCGGTCCAGGAAGTGAATGATGAGCATGTGGCGTCAAGCCCCAACAGGCGAAGTCCTGATAGTCCTGCTGAGCAGCAGACGAACACTGATGAAACACACCACGCTCTCTCTACAGAAACAGAACCGACAGCGATGGAGAGCTGAAGAACTCTGAAGAAAATGGAATACAATTGTTTACCACAGCTAAAAGGAAAGCTCACTAGTCTCGTGCCAGATACATGGCGCTCTGCAGACCACTTTGATGTTCGCCATTGTATTTTTCAATTTTTATAGGACACCTTGGCCCGTCCCCAATTCCTCCCCCTCAAGCTACCATGCTTTTTTTTCTGCCACGTTAACTCTAACTTTGGTCTTTCATACAGTATTTATAATGAGAGATTCCATTTTTAGCACTTCTAACAGGAAATCGAAGGGGGAGAGGAGTCTTGTTCTGCTTTGAAGTAACTGTACTGTCACGTTAGTCAAGGCATCTGTTGGCTTTGCTTGAGAATGATATTGAAGCCTACAGAACCTAGAAAAGGCTAATGGTGGATAAGTATGAGTCTGGTACTTTTTgtgagtttttatttttttatctggtCTGTTCTTATTAATCCAGTCGCATCATATAAATATTAAGCCAGTGAACGGAACCACATCACATGTTTTCCAATTAAGTTCCACCtgctttt
>XM_036978086.1
GCGCGTTCACGTGAAGGGGGGGGGGATGATTCTAGAAGGGGTACCTGAACGTACCCTCTTACTTTCACCCCCATATTTTTACTCTGTGACTGCGGTCGATTTCCTGTTCTCTTTATCTGTTTGTCAAGACAACATTCATActaaaaaacataaaataatcACAAACAACAAGTTATATGTTGTGGAAGACAGATATTTATGAAATAAATGTTTTACTTCGGAGCCAAAGCTTTTGATTTGATGTTACTATGCATTTTCTAATTAGTGGTCAGATTCAAATTAGGAAAACGATGTCGAATTTCCAGTGTACACATTGTAGAGTATGATTGGTTTGAAGAATGGAGTGAAAAGAAATTAAACCAATTATAGTGGCCAGTAGGCGGGATTTCCGCTCTGATAATCAAAGTTAGCGGAAGCTATTCTTATGAAGCTAACCGCCTCATCTCGCGCTTTGGGAAGCTAGCTTTCCAGCTAGCAAGCGTAATCGTTTTGCAGGTTTCATGTCGACCTGAAAACGGTGAAGAAGCGACACATAAAGACACCCAGAGTTCGCTAAAGAAGAAAGTAAAGGCTGCACAGAAGAGCAGGACAATGCCGCACAATTTCCAACCCGGAGACCTGGTCTTCGCTAAAATGAAGGGGTACCCCCACTGGCCAGCCAGGATTGAGGATGTAGCAGATGGAGCAGTAAAACCCCCTCCAAATAAAGTCCCCATCTTCTTCTTTGGGACCCATGAAACAGCATTCCTTGCACCAAAGGACCTTTTTGCATATGACAAGTACAGCGAGCGCTATGGGAAACCTAATAAAAGGAAGGGCTTCAATGAGGGCTTGTGTGAAATCCAGAACAACCCTCACGCCTCATACAGTGCTCCTGCACCTGTCAGCTCGTCTGACAGTGAAGCCAATGACGGTGCAGCAGGAAGTGAGGCAGAGGATGACGAGGAAGCAGTGGTGCCCAGGAAAGCATATTCAGGAAGTGAAGTAAATTCTGACTCAGGAAGTGAGGATcgaggaggggtgaagaggaaGGCCCCTGCTGCCAAGCGGCCCCCTGTGAAGAAGACCCGGGGTTCGTCCAGTGAccgggatggagaggagagtggCTCACCCTCGGAGCCAGACCCATCCCCTTCTGACTCAGACTCTGGGAAGAACAGTGACCAGGACTTCACCCCAGAGAAGAAGGCAGCAGCAGGCCGTGGTGGCGCCGGGAAGAAGGCTGGAGGTGGCAAAGGGAAGAAGGTGGTGTCGTCGGACTCCGACTCTGGGTCTCAGTCAGACAAGAAGAAAGGGGGCAGTGATTCAGAGGATCAGAAGCCACGGCCTGCTCTGTCTGGATCAGAATCCCAGTCTGGCTCCAAATCCGACTCTGACTCAGAGCCACAGCCACCTCAACGGAAGGCTCCTCAAGCGCGCAAGAAAGAGAAGCCTCCACCAAAGCCTCGGGGTGGACGGAAACCCAAAGCTGCCCCGGTCAGAGCACCGGCATCTTCCTCTGACAGTGATAGCGACAGTGAGCCGGACCGAGTCAGCGACTGgaaaaagagagatgaagagCGTCGGAAAGAGCTGGAGGAACGGCGGAAGAAGGAGCAGGCAGAGGAGATCCTCAAGTAtcgggagagggagaaggaagaagagCAGAGAAAGAAGGACAAGGAGAAGGGAAAGAGCAGTGGTGAAAACAGTTCAGATGAGGGTGTAGATCACCCACTGAAGAAGTCCAAGAAACCCCCACCGCCCCCCATCCCCGCCCCCTCCGACTCTGACTCTGGACCTGAGGTGAAAGCATCTGCAAAGCGTTCAGACAACCAGAAGAAAGGGAgaacaaagaaagagagggatcATGGTAAAGGCAAAAAGGAGAAAGATGTGAAGGAAAAGCGAACCCAGCGGTCAGAGGAGAGGCCCCGAGTGAGGTCCAAGCCTGACAAGCCCAAACGCAAACCAGAGAGACCTCCAGAGAGGAAAGCAGAGAAGAAAAAAGAGCCAACTCCAGACGAAAAGTTGCAGAAGCTCCACGCTGACATCAAGTTTGCACTGAAAGTGGACAACCCAAATACTGCAATGGCGTTGTCTGTTCTGCAGGACATAGAGCGCTGTCTACAGGCCCTGGCGGAGCTGGAAGCTGTGCCGGTCACCAGCCACATCCTGCAGAAGAACTCAGATGTTATTGCCACGCTTAAAAAGATCCGTCGATACAAAGCAAGCAGTGACGTAATGGAAAAGGCCAGCCAGGTCTACAACAAATTAAAGGGGCAGTTTGTGGTCAAGTCTGAAATGCCAAGTAAACACAAAGCTGAGGGAAAGGAGCAGGAAGAGAATGGGAAGGAGACACCAAACACAGATGTAACACCTGTGAATGGGGAATCAGAAGTCCAGAAAAAGGAATGCACTGAGCTGGAGGATACCCCAAAGTCACCGGTCCAGGAAGTGAATGATGAGCATGTGGCGTCAAGCCCCAACAGAAACAGAACCGACAGCGATGGAGAGCTGAAGAACTCTGAAGAAAATGGAATACAATTGTTTACCACAGCTAAAAGGAAAGCTCACTAGTCTCGTGCCAGATACATGGCGCTCTGCAGACCACTTTGATGTTCGCCATTGTATTTTTCAATTTTTATAGGACACCTTGGCCCGTCCCCAATTCCTCCCCCTCAAGCTACCATGCTTTTTTTTCTGCCACGTTAACTCTAACTTTGGTCTTTCATACAGTATTTATAATGAGAGATTCCATTTTTAGCACTTCTAACAGGAAATCGAAGGGGGAGAGGAGTCTTGTTCTGCTTTGAAGTAACTGTACTGTCACGTTAGTCAAGGCATCTGTTGGCTTTGCTTGAGAATGATATTGAAGCCTACAGAACCTAGAAAAGGCTAATGGTGGATAAGTATGAGTCTGGTACTTTTTgtgagtttttatttttttatctggtCTGTTCTTATTAATCCAGTCGCATCATATAAATATTAAGCCAGTGAACGGAACCACATCACATGTTTTCCAATTAAGTTCCACCtgctttt
>TU484731
ATTGAGTGTGTGCGCGTTCACGTGAAGGGGGGGGGGATGATTCTAGAAGGGGTACCTGAACGTACCCTCTTACTTTCACCCCCATATTTTTACTCTGTGACTGCGGTCGATTTCCTGTTCTCTTTATCTGTTTGTCAAGACAACATTCATActaaaaaacataaaataatcACAAACAACAAGTTATATGTTGTGGAAGACAGATATTTATGAAATAAATGTTTTACTTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603887.2 False 3059 mRNA 0.49 16 64983341 64991001
XM_021603886.2 False 3092 mRNA 0.49 16 64983341 64991004
XM_036978086.1 False 3027 mRNA 0.48 16 64983341 64991007
TU484731 True 231 lncRNA 0.39 1 64990788 64991018

Neighbor

gene id symbol gene type direction distance location
LOC110524334 LOC106613806 coding downstream 657 64939266 ~ 64982684 (-)
LOC110524333 LOC106613805 coding downstream 35923 64929844 ~ 64947418 (-)
LOC110524332 LOC106613803 coding downstream 72145 64903039 ~ 64911196 (-)
LOC110524330 LOC106613802 coding downstream 172677 64701867 ~ 64810664 (-)
LOC110524329 LOC106613801 coding downstream 281946 64664327 ~ 64701395 (-)
LOC110524336 chaf1a coding upstream 20632 65011639 ~ 65022842 (-)
LOC110524339 LOC106613811 coding upstream 39472 65030479 ~ 65051482 (-)
LOC110524344 stap2 coding upstream 69159 65060166 ~ 65083747 (-)
LOC110524345 sh3gl1 coding upstream 100173 65091180 ~ 65109379 (-)
rorca rorc1 coding upstream 130817 65121824 ~ 65137960 (-)
G427910 NA non-coding downstream 55122 64927772 ~ 64928219 (-)
G427909 NA non-coding downstream 56595 64926270 ~ 64926746 (-)
G427386 NA non-coding downstream 203201 64779875 ~ 64780140 (-)
G427360 NA non-coding downstream 207880 64718887 ~ 64775461 (-)
LOC110524326 LOC106613800 non-coding downstream 413267 64568484 ~ 64644074 (-)
G427906 NA non-coding upstream 3098 64994105 ~ 64997116 (-)
G427902 ubxn6 non-coding upstream 19546 64999708 ~ 65011598 (-)
G427950 NA non-coding upstream 93252 65084259 ~ 65085437 (-)
sema6bb LOC106613817 non-coding upstream 190901 65181687 ~ 65333174 (-)
G428035 NA non-coding upstream 231390 65222397 ~ 65222600 (-)
G427287 NA other downstream 414961 64566681 ~ 64568380 (-)
LOC110522986 LOC106613472 other downstream 696982 64283744 ~ 64297376 (-)
G425810 LOC106613766 other downstream 1679947 63300924 ~ 63303394 (-)
G428132 NA other upstream 379109 65370116 ~ 65382590 (-)
LOC110524398 LOC106613863 other upstream 1796044 66786837 ~ 66793995 (-)
lrrc7 LOC106613881 other upstream 2819598 67810595 ~ 67983549 (-)
bend5 LOC106584333 other upstream 3349197 68331871 ~ 68352828 (-)

Expression


Co-expression Network