LOC110524340 (fsd1)


Basic Information

Item Value
gene id LOC110524340
gene name fsd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65052280 ~ 65060054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603897.2
ACGGCCCTAGGCGTTGGACGAAAGATGCAATGCACTCCGGCAGCATCAGTACCAGCCCAGTAGAGTGTGCTGCAAATAAACCAAAAATAGGGGACGGCGACGAATAGCCTTTATAATTACTGATACACCGGTACCGGTTTCTTGGTCTGGCAAGATGGGAGATCAGAAGGAATCGCTTCGTAAGATCACCACCACCCTGGCCCTGAAGAATGAGGAGATCACAAACTTCATCTGCTGTCAGAAACAGAGCCTGGAGAACCTGGAGGTTAACTCCAGCCGTGTCCAGGAGGACCTGGAGACAGAGTTCAGCTCCCTCCACTCAGTACTGGACGATATAAAGGACAGCATGGTCACCAGGATCAAACAGGAGAGGGCCAGCCGCACCTATGAGCTACAGagtcAGCTGAGTGCATGCTCCAAAGCCCTGGAGAGCTCCGAGGAGCTATTGGAGGTAGCCAATCAGACTCTCTGCTCCTCGGAAGCAGACGACTTCACTCAGgcGGCCAAAGACATTAAGGATAGTGTGACAATGGCCCCAGCCTTCCGTTTGTCGCTGAAAGCCAAAGCCACTGACAGCATGAGTCACATGATGGTGGACTTCACCCAAGAGAGGGAGATGCTGCAGGCCATCAAGTTCCTCCCAGtgCCTGCGACCCCAGAGATTTTGGTGTCAGAGTGCCAGGTGTGTGACAACACGGTGACGGTACAGTGGGCTCTGCCTGAGCCCGACAGCAAGATAGACCACTATGACCTGGAACACCGCCGCACCAACTATGAGGGGCCGCCCCGCGGCCGAGAGGACTACCCATGGATGGTAGTTGAGGGCATCTGCGAGACCGAGTACACCCTTACAGGGCTTCGCTTCGACACACACTACATGACGTTCCGTGTGAAGGCGTGTAACAAGGCTGTGGCAGGAGAGTTCTCTGAGCTTGTAACACTGGAGACACATGCTTTCCTGTTCAAGCTGGATGCCGGCTCGGCTCATCAGAACCTGAAGGTGGAGGACCTCAGTGTGGAGTGGGACAGCTGCGGGGGGAAGGTTGTCCAGGACATCCGCAAGGACAAGAACAGAACCAACCAATCTCCAATGCACTCACCTGCCAGGACAGCCATGAATTCACCTAAGAGAGTGCCATCTGCTCGGGTCGGCAGAGACCGATTCACGGCTGAATCCTACACTGTACTGGGAGACACTTTTATTGACGCAGGCCAGCAGTACTGGGAGGTGCGGTTCGATAAGGAGAGCAAGGCATTCGCTGTGGGCTTGGCCCTGCGTAACCTGGGCCGCTTTGACCAGCTGGGGAAGAGCAACGCATCATGGTGCATCCACCTGAACAACTGGCTGCAGCAGAGCCTCACAGCCAAGCACAACAACAAGGCCCGCACCCTGGACTGTCCCATCCCGGACCGCATAGGGGTCTACTGCAACTacgaggaggGTGCACTGTCTTTCTACAATGCCAGAACCAAGACACTGATGCACACTTTTAGAACCAAGTTCACACAGCCTGTCATACCAGCCTTCTCGGTGTGGAATGGTTGTTTCTCAGTGCAGACGGGTCTGCAGGTGCCCAGTGCGGTGCAGAGTAGCCAGAGGAAGAACAGTGGTACCAGCAGCTCCAACACCAGCCTCACCTAGACCCAGCCAGAACCAACTGCTGCAGCAGAACCTAACCCCATTTAGGCTGTGTGGTGGTTGGAGCTCAAACTGGTCCCAGCGCTGCCTCACCCAAACCCCCCCCAATACACACCACACCTGCCTGATCCCAATCAGACCACTACACTCCCTGTGCCTTCCAGACAGGTGCCCTCAGTGTATCAGGAGTGAATCATAAAGTAATTTCATTCATATCCCTAATTCAACAAAGGCCAAATGAAGATAACCCAGTTACCAATATATTAGGAGCTAGGCACAATATGTTAATATTTAAATGCGACAGACCCCAATGCAACTAAAAACAATCCATATAACGTGGTTGTAGTACAGTAGTCATTAATACATACTGAATGTTTGGAATCCTCTGCCTCTTATTTTGCTAGTTGCTTCTCAGTACAGATGCACCTAATTTACCTGTATAACCCAAATAACTTTGTAGCGAAACGACCTGCTTATAGTCACAAGTTTATTGCTACTTAAGAATGTATTGAATTCTACATCACCAGCAGCTGTGTGGACCAGTGGAGACACAGATGGAAATACAGAACTGCTGATTGGATCTTGGGGAAGGGTTGGTATGGGGTCGGAGGGTCTGAATATTGTAACGTGTCACCGTTTAATCACCTGAAGTGAGGAGAGAAACCGTTTCATGAGCCGGGTGAGGACTACCTGGAAGAGAGACATTCCGAGATGTTGTTGCTGCAAGTGTTTACCGATGTTAACACCAGTCCTTATTCATGTCACCTGATGTCTCAACTCAGTGCTGGGGTGCTATTATTTGAAATACAGTCTACGTTTTTGTCATGTTGATGGTATGCATCATATGAATATAACCTGCAATGCTTCAAAGCTTCCACTGGAGAATGTTTTACGTCACAGGTTAAAACATTGGACAATGTAAATATGTTCCTTTCATttttacactacagtatgtatGTTTGTCTCACAGAGTTAATAAAGCAGTAAGAGAGC

Function

symbol description
fsd1 Acts upstream of or within Notch signaling pathway and cilium assembly. Predicted to be located in several cellular components, including cleavage furrow; microtubule cytoskeleton; and nucleus. Orthologous to human FSD1 (fibronectin type III and SPRY domain containing 1).

NR:

description
fibronectin type III and SPRY domain-containing protein 1-like

GO:

id name namespace
GO:0005815 microtubule organizing center cellular_component
GO:0005874 microtubule cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K24489 FSD1; fibronectin type III and SPRY domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603897.2 True 2632 mRNA 0.50 12 65052280 65060054

Neighbor

gene id symbol gene type direction distance location
LOC110524338 LOC106584398 coding upstream 23452 65024444 ~ 65028828 (+)
LOC110524337 ubxn6 coding upstream 40674 64998569 ~ 65011606 (+)
LOC110524331 LOC105011595 coding upstream 209425 64811241 ~ 64842855 (+)
tle2a LOC106613798 coding upstream 483876 64520297 ~ 64568404 (+)
LOC110524325 lpp2 coding upstream 558139 64460935 ~ 64494141 (+)
mpnd LOC106591182 coding downstream 23687 65083741 ~ 65090497 (+)
LOC110522880 NA coding downstream 115124 65175178 ~ 65177361 (+)
plin3 LOC106613818 coding downstream 296058 65356112 ~ 65366865 (+)
zgc:77486 LOC106613819 coding downstream 307132 65367186 ~ 65382613 (+)
abhd17ab LOC106613821 coding downstream 328007 65388061 ~ 65396176 (+)
G427531 tmigd2 non-coding upstream 1162 65050741 ~ 65051118 (+)
G427529 NA non-coding upstream 3648 65048334 ~ 65048632 (+)
G427492 NA non-coding upstream 122956 64929111 ~ 64929324 (+)
G427491 NA non-coding upstream 123188 64928434 ~ 64929092 (+)
G427563 NA non-coding downstream 53696 65113750 ~ 65128405 (+)
G427626 NA non-coding downstream 164098 65224152 ~ 65224364 (+)
G427627 NA non-coding downstream 167377 65227431 ~ 65227769 (+)
G427628 NA non-coding downstream 168197 65228251 ~ 65228473 (+)
G427633 NA non-coding downstream 180957 65241011 ~ 65241240 (+)
G427476 NA other upstream 55142 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 807751 64243153 ~ 64244790 (+)
sac3d1 sac3d1 other upstream 872894 64177028 ~ 64183138 (+)
nfil3-4 LOC106614010 other upstream 1368041 63676409 ~ 63684848 (+)
G427747 NA other downstream 393802 65453856 ~ 65521380 (+)
G428696 NA other downstream 1082025 66142079 ~ 66142605 (+)
G429156 NA other downstream 1921895 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 2400675 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 3043125 68103179 ~ 68103534 (+)

Expression


Co-expression Network