LOC110524345 (sh3gl1)


Basic Information

Item Value
gene id LOC110524345
gene name sh3gl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65091180 ~ 65109379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603905.2
CAGGGATTAACCGCTTGGTGCAATTTTGCAAAAGTGTACACTGTGTGGATATGCTCATAGCTACGTATTACTAGATGCTTTCAAGACCTATCTACACTTATAGAGATCTGCGTGCTTGTACAACCGCGGTTCACGTGAACCGCATGAAATCCTCGTAGACGTGGTCAGCAATCAGATATCTGACTGAACGACGGTAGCGCAATCGTATGACCACGGCGTACTAGTTAACAATTTTGCGTGATAGATAGTTATTCTCAACTTTAATTTACTGCAAAAGTGAAACAGTCCGGCTCCAAGATGTCAGTAGCGGGCTTCAAGAAGCAGTTTTATAAAGCCAGCCAGATGGTCAGTGAGAAGGTCGGCGGTGCAGAGGGAACGAAACTGGATGAAGACTTCAAAGATTTGGAAAGGAAAGTAGATGTGACCAGCAAGGCTGTGGTGGAAGTCATATCTAAAACCTCAGAGTACCTGCAGCCTAACCCAGcGTCGCGGGCGAAGCTGTCTATGTTGAACACTGTGTCTAAGATCAGAGGCCAGGTGAAGAACCCGGGCTATCCCCAAGCTGAGGGCCTGCTGGGAGAGTGTATGGTCAAGTACGGCCGGGACCTAGGGGAGGAAACCAACTTCGGTGGGGCTCTAGTAGACGCGGGGGAGACCATGAAGAGGCTGGCGGAGGTGAAGGACTCTTTAGACATCGACGTCAAACAGAACTTCATTGATCCATTACAAAACCTGTCTGACAAGGACCTCCGAGAGATACAGCACCATCTGAAGAAGCTGGAGGGAAGGCGTCTGGACTACGACTATAAGAAGAAGCGCCAAGGGAAAATACCAGATGAGGAGCTGAGACAGGCACTGGAGAAGTTCCACGAGTCTAAAGAGGTGGCCGAGATCAGCATGTACAACATACTGGAGACTGACaTAGAGCAGGTGAGCCAGCTGTCGTCTCTGGTGGAGTCCCAGCTGCAGTACCACAGACAGGCCACACAGATCCTGGACGAGCTCTCGGACAAACTGAGGGACAGGATGAACGAGGCCCAGAACCGACCACGCCGCGAGTATACGCCCAAGCCCAAACCCATCTTTGACTTTGGAGAATGTGACAACCAATCAACCAATGGTGGCTACACGACCTCCGTTGCCACACCATCCTCCCGCAACTCAGAGTTACACTTCCTCCACGCCAGATTGTCATTTCAGAAAACCAGATTCTCAGAACAGCCGTCCTGTAAGGCCCTGTTTGACTTTGACCcagagaacgagggagagctgGGCTTCAAGGAGGGCGACATCATCACCCTGACCAATCAGATCGACGAGAACTGGTATGAGGGCATGCTGCATGGTCAATCAGGATTCTTCCCTCTCAACTACGTGGAAATCGTCGTCCCCCTGCCACATTAAGGAGTGCTGTACAGAGTACATGAGAGAGATAATGGGAacgggagagtgagggagggaatgaggagcCAGTTAACAGATTATAGAGTCTTTGTCCTCATCTTTACCATCATCGCCATCATCACAGATGTACTTGTACTCTTTGTCACTTTGTCATCTTGACGTTTGAAGGAAGGAAATTGGAAGATGGTGGTTTCTCGCATTCCAgttctgagaaagagagatttGAATATGACCCCCGCTGCCCCCCAAGCAAAAATAAATacggacagacggacacagaCATGAAGAACCGAACTAAACCAGACTTAATTTTTTAAAGTAATGTTTTCTGTCAACCACAGATATCCCAATAGAAAGGGAAGTTTCAAATGAAATGAATTTAGAATTGAAATGGTCAAAATCAATTTATTTAACGTTAAATGACATACAGATAAGCAGCAGAATACATTTTACATCGGCAGTTTAGCTGGTTCTGACTCTGTAAAAACTGTACAACTTGTAAAGCCTTATTTTCATAACTACAGACATTTTAAAAGTAATTTGTCACATCCAAAGTTTCTGTAGGTCCCACATTTCAGTATGGACTCTGGTGAATACTTGCCTTATTTCCAAGGCAAGTATGTCAGACACACTGCAACTGCACAGCCTTTCCAAATGATGGAGTCTGACTGGACAACGTCTCTAGGAGCCCCCTGCCGGCCAAGCTTAGACAACCACTCCCCTCCTCAGTAAACAACTACAGTAATGCCTTGTAGCTATGATCCATCTACAGTCAGTAGATTTACAACGCTATGTACATCCTGTATGCCTGAGCCACAGGAGAGCTTGAAGGGCCTCAGACATTGTTTAGTTTTGCAATGGTGTGTATTTGATTTGTTTTGGTTTCAGccttgtttattgttttttaatGTACAGCTAAACTGTTAAattgcaccttggtcctccaaTGAGATTGTTGCTGTACGTATGAGAGCCTGTACGTTTTGTTTAGTTATAGGCCTCTACTGAGAGGGTGTTCAAACCCAGACAGCCAGAGACTGAAGCCCCTGAGGAGAACACTAGACCCAAAGTCAAACACTAACATTTATAAGAAACCGCTTTCCCCATTGATGGGCTACTGCACATTTAGTGGCGTTATCAACATACGAAGCCTGTGTGTTTTACTTTTCTTCACTGTCTAATCATCTGTTCAATAGAGGAAACACATGCCACATAGAATAGAGTACATGGTGTGTTAACCATGATATGGTGTTTGGTTTTAGCTGTCATAGTACCCGTCTGTCCGTCCTAGTGCCTCCATAAGCGACAACGCTGCTGGCGgcgttgtgtgtgtgactgaacaTCTTTTGGATCAGTAAATCCCATTCATTCACGTCAGTCACTTTCTTCCtgtattttgtattatttacTACTCCGTTGGTTATCATACTCCTCGCTGGGTCTCTTAGGATGGGTTGGGTTCTAGTCTGGAGTTGGTATGTTGCTGCTGGACAGGACTGCATAGGGCCTCGAATACAGTAAAGACAGGTTAGTGATGCCGAACAGGACAAAAAGGGAAAAGGAATAATATATAGCAGAAGTCTTATTTTATTTGTGATGATTGTTCTGTTAGGAAAAGCCCCTACTACCAAGATGCATACTATCAGCGCTAAGAGACCCCCCACGATTGATGGTTGTGGAGGCGATGTGATTGAGTCACACTTGCTGCAGTGCACTCTTTCATTCAGAAATGCCTCTCCCCTCAGTGTTGAGGTCCAGGCTACTTTCAATGGTCATGAGTTTAAGCTACTCTTCTCTGCTCCAGGCTACTCCCTCCATCCACCACCCTGCTCTGTCACACCTCACTCTGGTGTTTGATCTCTTCCATACGTTTACAGGCCTGCTCGTAGTTCATTTCAATGGGAGAGTGGAGTGATGGACTGGTTAAGAGCAACTTGGTGCTGACTGGATCACACACCACCACAAGTCCAGAACAAACAGAGAATCCATAGTTAGGGGTGCTTCAGTGCCGTTGGGAAAGGAAGGAATAATACTACCAACCAAAATAACCAAGCTACTTACAATGGTCATACATTTCTGTACCAAGGGTTCTGTTGCCATTTCCAGTCTTGGCACTTTGCGGTGTACATACATTTGTGCATGTCTTTGTGTCACACTACACTTTTTAAAAAGGGTTATTTCTGTCTAATCAGTTGGAGTACCAGAATTCTCTTTAAAAACTAAAGGTCTTTCTTGCACTCAATagtattattttttatatacGAAACCTTAATATTTGTTATTAATCTTTGCATGTAGGTCTATCCAATACAGTTGAATTTAGTTGAAgcattcttttacttttggtatgtcattttagtATGGTATTTCAAATTTAACTGCAATATATTGTCATGTATTATCAAAATATTTGTACTTGCTTTGTCTTGTTTCCCCCTTCTACCATCTTTGGATAAATAAATGGAGAAAAAAAGCA
>XM_021603906.2
CAGGGATTAACCGCTTGGTGCAATTTTGCAAAAGTGTACACTGTGTGGATATGCTCATAGCTACGTATTACTAGATGCTTTCAAGACCTATCTACACTTATAGAGATCTGCGTGCTTGTACAACCGCGGTTCACGTGAACCGCATGAAATCCTCGTAGACGTGGTCAGCAATCAGATATCTGACTGAACGACGGTAGCGCAATCGTATGACCACGGCGTACTAGTTAACAATTTTGCGTGATAGATAGTTATTCTCAACTTTAATTTACTGCAAAAGTGAAACAGTCCGGCTCCAAGATGTCAGTAGCGGGCTTCAAGAAGCAGTTTTATAAAGCCAGCCAGATGGTCAGTGAGAAGGTCGGCGGTGCAGAGGGAACGAAACTGGATGAAGACTTCAAAGATTTGGAAAGGAAAGTAGATGTGACCAGCAAGGCTGTGGTGGAAGTCATATCTAAAACCTCAGAGTACCTGCAGCCTAACCCAGcGTCGCGGGCGAAGCTGTCTATGTTGAACACTGTGTCTAAGATCAGAGGCCAGGTGAAGAACCCGGGCTATCCCCAAGCTGAGGGCCTGCTGGGAGAGTGTATGGTCAAGTACGGCCGGGACCTAGGGGAGGAAACCAACTTCGGTGGGGCTCTAGTAGACGCGGGGGAGACCATGAAGAGGCTGGCGGAGGTGAAGGACTCTTTAGACATCGACGTCAAACAGAACTTCATTGATCCATTACAAAACCTGTCTGACAAGGACCTCCGAGAGATACAGCACCATCTGAAGAAGCTGGAGGGAAGGCGTCTGGACTACGACTATAAGAAGAAGCGCCAAGGGAAAATACCAGATGAGGAGCTGAGACAGGCACTGGAGAAGTTCCACGAGTCTAAAGAGGTGGCCGAGATCAGCATGTACAACATACTGGAGACTGACaTAGAGCAGGTGAGCCAGCTGTCGTCTCTGGTGGAGTCCCAGCTGCAGTACCACAGACAGGCCACACAGATCCTGGACGAGCTCTCGGACAAACTGAGGGACAGGATGAACGAGGCCCAGAACCGACCACGCCGCGAGTATACGCCCAAGCCCAAACCCATCTTTGACTTTGGAGAATGTGACAACCAATCAACCAATGGTGGCTACACGACCTCCGTTGCCACACCATCCTCCCGCAACTCAGTCTCAGAACAGCCGTCCTGTAAGGCCCTGTTTGACTTTGACCcagagaacgagggagagctgGGCTTCAAGGAGGGCGACATCATCACCCTGACCAATCAGATCGACGAGAACTGGTATGAGGGCATGCTGCATGGTCAATCAGGATTCTTCCCTCTCAACTACGTGGAAATCGTCGTCCCCCTGCCACATTAAGGAGTGCTGTACAGAGTACATGAGAGAGATAATGGGAacgggagagtgagggagggaatgaggagcCAGTTAACAGATTATAGAGTCTTTGTCCTCATCTTTACCATCATCGCCATCATCACAGATGTACTTGTACTCTTTGTCACTTTGTCATCTTGACGTTTGAAGGAAGGAAATTGGAAGATGGTGGTTTCTCGCATTCCAgttctgagaaagagagatttGAATATGACCCCCGCTGCCCCCCAAGCAAAAATAAATacggacagacggacacagaCATGAAGAACCGAACTAAACCAGACTTAATTTTTTAAAGTAATGTTTTCTGTCAACCACAGATATCCCAATAGAAAGGGAAGTTTCAAATGAAATGAATTTAGAATTGAAATGGTCAAAATCAATTTATTTAACGTTAAATGACATACAGATAAGCAGCAGAATACATTTTACATCGGCAGTTTAGCTGGTTCTGACTCTGTAAAAACTGTACAACTTGTAAAGCCTTATTTTCATAACTACAGACATTTTAAAAGTAATTTGTCACATCCAAAGTTTCTGTAGGTCCCACATTTCAGTATGGACTCTGGTGAATACTTGCCTTATTTCCAAGGCAAGTATGTCAGACACACTGCAACTGCACAGCCTTTCCAAATGATGGAGTCTGACTGGACAACGTCTCTAGGAGCCCCCTGCCGGCCAAGCTTAGACAACCACTCCCCTCCTCAGTAAACAACTACAGTAATGCCTTGTAGCTATGATCCATCTACAGTCAGTAGATTTACAACGCTATGTACATCCTGTATGCCTGAGCCACAGGAGAGCTTGAAGGGCCTCAGACATTGTTTAGTTTTGCAATGGTGTGTATTTGATTTGTTTTGGTTTCAGccttgtttattgttttttaatGTACAGCTAAACTGTTAAattgcaccttggtcctccaaTGAGATTGTTGCTGTACGTATGAGAGCCTGTACGTTTTGTTTAGTTATAGGCCTCTACTGAGAGGGTGTTCAAACCCAGACAGCCAGAGACTGAAGCCCCTGAGGAGAACACTAGACCCAAAGTCAAACACTAACATTTATAAGAAACCGCTTTCCCCATTGATGGGCTACTGCACATTTAGTGGCGTTATCAACATACGAAGCCTGTGTGTTTTACTTTTCTTCACTGTCTAATCATCTGTTCAATAGAGGAAACACATGCCACATAGAATAGAGTACATGGTGTGTTAACCATGATATGGTGTTTGGTTTTAGCTGTCATAGTACCCGTCTGTCCGTCCTAGTGCCTCCATAAGCGACAACGCTGCTGGCGgcgttgtgtgtgtgactgaacaTCTTTTGGATCAGTAAATCCCATTCATTCACGTCAGTCACTTTCTTCCtgtattttgtattatttacTACTCCGTTGGTTATCATACTCCTCGCTGGGTCTCTTAGGATGGGTTGGGTTCTAGTCTGGAGTTGGTATGTTGCTGCTGGACAGGACTGCATAGGGCCTCGAATACAGTAAAGACAGGTTAGTGATGCCGAACAGGACAAAAAGGGAAAAGGAATAATATATAGCAGAAGTCTTATTTTATTTGTGATGATTGTTCTGTTAGGAAAAGCCCCTACTACCAAGATGCATACTATCAGCGCTAAGAGACCCCCCACGATTGATGGTTGTGGAGGCGATGTGATTGAGTCACACTTGCTGCAGTGCACTCTTTCATTCAGAAATGCCTCTCCCCTCAGTGTTGAGGTCCAGGCTACTTTCAATGGTCATGAGTTTAAGCTACTCTTCTCTGCTCCAGGCTACTCCCTCCATCCACCACCCTGCTCTGTCACACCTCACTCTGGTGTTTGATCTCTTCCATACGTTTACAGGCCTGCTCGTAGTTCATTTCAATGGGAGAGTGGAGTGATGGACTGGTTAAGAGCAACTTGGTGCTGACTGGATCACACACCACCACAAGTCCAGAACAAACAGAGAATCCATAGTTAGGGGTGCTTCAGTGCCGTTGGGAAAGGAAGGAATAATACTACCAACCAAAATAACCAAGCTACTTACAATGGTCATACATTTCTGTACCAAGGGTTCTGTTGCCATTTCCAGTCTTGGCACTTTGCGGTGTACATACATTTGTGCATGTCTTTGTGTCACACTACACTTTTTAAAAAGGGTTATTTCTGTCTAATCAGTTGGAGTACCAGAATTCTCTTTAAAAACTAAAGGTCTTTCTTGCACTCAATagtattattttttatatacGAAACCTTAATATTTGTTATTAATCTTTGCATGTAGGTCTATCCAATACAGTTGAATTTAGTTGAAgcattcttttacttttggtatgtcattttagtATGGTATTTCAAATTTAACTGCAATATATTGTCATGTATTATCAAAATATTTGTACTTGCTTTGTCTTGTTTCCCCCTTCTACCATCTTTGGATAAATAAATGGAGAAAAAAAGCA

Function

symbol description
sh3gl1 Enables identical protein binding activity. Predicted to be involved in central nervous system development and signal transduction. Located in cytosol. Is active in glutamatergic synapse and presynapse. Implicated in acute myeloid leukemia and high grade glioma. Biomarker of high grade glioma.

NR:

description
endophilin-A2-like isoform X2

GO: NA

KEGG:

id description
K11247 SH3GL; endophilin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603905.2 False 3880 mRNA 0.45 10 65091180 65109379
XM_021603906.2 True 3835 mRNA 0.45 9 65091180 65109379

Neighbor

gene id symbol gene type direction distance location
LOC110524344 stap2 coding downstream 7433 65060166 ~ 65083747 (-)
LOC110524339 LOC106613811 coding downstream 39698 65030479 ~ 65051482 (-)
LOC110524336 chaf1a coding downstream 68338 65011639 ~ 65022842 (-)
LOC110524335 LOC106584403 coding downstream 100173 64983341 ~ 64991018 (-)
LOC110524334 LOC106613806 coding downstream 108496 64939266 ~ 64982684 (-)
rorca rorc1 coding upstream 12445 65121824 ~ 65137960 (-)
sema6bb LOC106613817 coding upstream 72308 65181687 ~ 65333174 (-)
rgl1 rgl1 coding upstream 298443 65407822 ~ 65455011 (-)
colgalt2 colgalt2 coding upstream 355004 65464383 ~ 65507042 (-)
zgc:92140 LOC106613825 coding upstream 410928 65520307 ~ 65550070 (-)
G427950 NA non-coding downstream 5743 65084259 ~ 65085437 (-)
G427902 ubxn6 non-coding downstream 79582 64999708 ~ 65011598 (-)
G427906 NA non-coding downstream 94064 64994105 ~ 64997116 (-)
G427910 NA non-coding downstream 162961 64927772 ~ 64928219 (-)
G428035 NA non-coding upstream 113018 65222397 ~ 65222600 (-)
G428048 NA non-coding upstream 142563 65251942 ~ 65252280 (-)
G428058 NA non-coding upstream 153774 65263153 ~ 65263382 (-)
G428063 NA non-coding upstream 158598 65267977 ~ 65268190 (-)
LOC110524332 LOC106613803 other downstream 180182 64903039 ~ 64911196 (-)
LOC110524330 LOC106613802 other downstream 358208 64701867 ~ 64810664 (-)
G427287 NA other downstream 522800 64566681 ~ 64568380 (-)
LOC110522986 LOC106613472 other downstream 804821 64283744 ~ 64297376 (-)
G428132 NA other upstream 260737 65370116 ~ 65382590 (-)
LOC110524398 LOC106613863 other upstream 1677672 66786837 ~ 66793995 (-)
lrrc7 LOC106613881 other upstream 2701226 67810595 ~ 67983549 (-)
bend5 LOC106584333 other upstream 3230825 68331871 ~ 68352828 (-)
G432310 LOC106613894 other upstream 3590442 68699821 ~ 68707448 (-)

Expression


Co-expression Network