colgalt2 (colgalt2)


Basic Information

Item Value
gene id colgalt2
gene name colgalt2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65464383 ~ 65507042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603923.2
GCTCCCTCCCACAATCGCTCACTCTTATATTCAGTTGCGGCAGAGCTCAGGTTTGGATAACGGTGTTATCTGGGAATGATGCCGGCGGTTGGAGCCGTGGGAGTCGGACTGCTCTGCGCCCTGCTTGTCGCCCTCATGCCGGGTGGCATGTCGGACTTGGTGACTCTGGTGCAGGACTCGGTCCGACCCGAATCGTCACTGCTGATGCCAAAAGTCATGATCGCCATTCTGGCTCGCAACGCAGCGCACAGCCTGCCGCACTACCTGGGCTGTATCGACAGGCTAGACTACCCGAAGGAGCGGATAGCTATCTGGGCAGCGACAGACCACAGTGTGGACAACAGCACAGCCATGCTGAGGGAGTGGCTGAAGCAGGCTCAGGACCAGTACCACTATGTGGAGTGGAGACCTATGGAGGAGCCCAAGTCCTATACTGATGAGTGGGGGCCCAAGCACTGGCCTCCGTCCCGCTTCAACCATGTGATGAAACTGAGGCAGGCTGCTCTTAAGGCAGCACGGGAACGCTGGGCAGATTACATACTGTTTGCAGACGGTGATAACCTGCTGACCAACCCAAAGATTCTCAACCTGCTCATGGCTGAGAACCTGACTCTGGTAGCTCCCATGCTAGAGTCACGCTCTCTCTACTCTAACTTCTGGTGTGGCATCACCCCACAGgGTTACTACAAACGTACCCCTGACTACCAGCCAATCAGGGAGTGGAAGCGTCTGGGTTGCTTCGCTGTACCCATGGTGCACTCTACCTTCCTGCTGGACCTGAGGCGTGGCGCCAGCAGGGAGCTGGCCTTCTACCCCCCTCACCCTGACTACAGCTGGGCCTTCGATGACATCATGGTGTTCTCCTTCTCTGCCCGGCAGGCAGATGTGCAGATGTACGTGTGTAACAGAGAGCACTATGGCTTCCTACCGGTTCCTCTGAAGGCCTCGCAGAATGTTGACGACGAGAAGGAGAGCTTCACACACACCATCGCTGAGGCCATGATTGATCACAACATAGCACCCTCAGAGTACCTGTACAATCCCGAGATGCCGCAGGACAAGATGGGCTTTGATGAGATATTCCTGATTAATCTGAAACGTCGTCTGGACAGGAGACAGAGGATGTTGAGCACCATGGCCTCTCTGGGTCTGCAGGCCACCATCACTGACGCAGTGGACGGcaaggctctGAACTCTTCTCAGCTGCAGGCATTGGGTATAGAGATGATTCCAGGTTATCAGGACCCGTACTCTGGCCGTGTTCTAACCAGAGGAGAGATAGGCTGCTTCCTCAGCCACCACTCCACCTGGGTACAGATGGCGGAGCGTGGTCTTTCCAAGGTGCTGGTGCTGGAGGATGACGTGCGCTTTGAGCCCAGATTTAAGAGGCGAATGATGACCATCATAGAGGAAGTAGAGAAGGCCCAGCTGGACTGGGATCTCATctATGTTGGGCGTAAGCGTATGCAGGTGCACCAACCGGAGCGTTCTGTGGAAGGGGTTAATAACCTGGTGGAGGCTGACTACTCTTATTGGACGCTGGGCTATGCCCTGTCAGCGCAGGGTGCCAGGAAGCTGCTGGCTGCTCAGGCCTTCAGCAAGATGCTACCTGTCGATGAGTTCCTCCCTGTCATGTTCAACAAACACCCCAATTCTGACTTCATGTCTCACTTTGAGCCTCGGGACCTGAAGGCCTTCTCTGTGGAGCCCCTCCTCCTGTACCCCACCCACTACACGGGCGAGCCGGGCTACGTGAGTGACACGGAGACCTCCACCATCTGGGACGACGAGGCCACCGCCACCGACTGGGACCGCCTGCACCAGCACGCCAGGAAGACAGAGCAGCAAGGCCGCATCCACACCGTGGCTCAGAACAGTGTGACGGGAGACTCACCTCCACCTGCCGCCCGCTCCACACGTGATGAACtctgagaaggaagagagagagacttgtagACGTGCTTttgcacggacacacacatggacatacacacggacacacacaaggacatacacattcacacactcatgcgcatgcacgcacgcacgcatgcactctctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacaactggatACACAGTCAACTACTCTGCTCAGTGCATTTTCTCATTGGCTATCTGCTGTCTACTAGCATATTATGCCTGATGAGGGGTGGATTGGTCTGTGCACTGAGAAAGTGGGCCCAGGACCTCAGATGTATTTATTCCCCTTGCGCTctacagtctgacacacacacacacgcacacacacacacacgcacacacacacacgcgcacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccccaaacacacacacacacacacacatacagtcaggGAGAGACCTtgaagagactcagagagaaggACTGGGGGGACCTGAACACCCACACCATGCAGGGAcgatgtgagagagacagagactggacGACCTGAGACTGCAACATGTGGAAGACAGATATTGCTGTTTGCAGTACAGAGATAAAACTCACAAACCAATGTTTATTGTATTGTTAAAACAGGATGATTATTGTAATTTAAAAATAACATGTGGTTTATGGGCAGCCCAGGGAATAAAGGAATCTTACAGCTGTCTGAAatgacgttgtgtgtgtgtgcgcttgtgtgcaTGCAGGCTGGTGTTTGTGTTTTTCCATGATCGCAAGTATACCCAGGAGTGCTGTCAGTTGCTATGATGTCATATCACTGTCACTACCAgaccacacactcatacacacatgcaagagcgcacacacacactgtcacaatCATTTGCCATTTGATTCTTTGTAAGAAGCAGGTCAGGACAGAGATGATGGAGGACAGTGTTCCCCTGAGACAGTCAGCCTGTGAACCTGTAGATGCTGTTGTAGCAGTTAGCAGACTGGCCCTGTTACACACAGATCAGACTACACTCATCTGGCTTTACGCTGAGCTGAGCTGAACCTGGCCTTTCATCTAACTGGAATGGTGGTGCTACAAATCTGTGTTTTCATTCACTCTGCAGTTTGTTTGTTTGATTCGGCCATATCTCCTGCTATCATCTCTGTTATGGCTACAGGGTTTGAAACGACTATGGTGTAAGGTTTTGGCCGTGTATTGCTGTTATTTCAATTGTATCACTAACCTAAACTACTGCACTGTTCCCACGACCTCGTCATGTCGACCTTACTGTCTGTAGCATAGACACAGCTTTGGTCGACGGCAACAATTCACTCAAGAACACGACTCATGTACAGTAAATCCCATTTAGTTGCAGGCCACAGTTTTTCAGGCCCCAGTTAAAGTCAAAACATGTGCACTGGATGCATGTACAGGCAGACACTCAGCTCCGTATTCAGTACACTATGTTCTATCCCATGGTGTGCACCGTGGTCAGGTTATAGGAAATTCCTCTCTGGGTTTTACTGTTCCCGTCCGTAGAATCAGTCGTTGAGGCTCAGACCTgcatggggaacagaggaagggagagagagaagaggagaaactgTCCAGAACGGAGGATTTTACGAGACACATGAGTTCCATAAAGAGACAGGCAGGTTGGATATGGAGAAGTCTGCCTCTGAGCCCTGAATACCTCTACTGCTGGACAGGAGGATGATAAGGAGGAGGCCACAGTAACCTACAGCACCATATCAGAACCACACCTCTAACCATacacaaactgtagctagctattaTAAGAGCCCAGTGTGGTGTTTGTTTGCCTGAGTGATTTAACTAACTGCGAAAATA

Function

symbol description
colgalt2 Predicted to enable procollagen galactosyltransferase activity. Orthologous to human COLGALT2 (collagen beta(1-O)galactosyltransferase 2).

NR:

description
procollagen galactosyltransferase 2-like

GO: NA

KEGG:

id description
K11703 GLT25D; collagen beta-1,O-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603923.2 True 3834 mRNA 0.52 12 65464383 65507042

Neighbor

gene id symbol gene type direction distance location
rgl1 rgl1 coding downstream 9372 65407822 ~ 65455011 (-)
sema6bb LOC106613817 coding downstream 131209 65181687 ~ 65333174 (-)
rorca rorc1 coding downstream 326423 65121824 ~ 65137960 (-)
LOC110524345 sh3gl1 coding downstream 355004 65091180 ~ 65109379 (-)
LOC110524344 stap2 coding downstream 380636 65060166 ~ 65083747 (-)
zgc:92140 LOC106613825 coding upstream 13265 65520307 ~ 65550070 (-)
LOC110524355 edem3 coding upstream 44303 65551345 ~ 65571173 (-)
fam78bb LOC106613832 coding upstream 171072 65678114 ~ 65681972 (-)
trabd2b LOC106613834 coding upstream 357576 65864618 ~ 65959260 (-)
LOC110524366 LOC106613835 coding upstream 538821 66045863 ~ 66050198 (-)
G428165 NA non-coding downstream 28153 65435322 ~ 65436230 (-)
G428132 NA non-coding downstream 81793 65370116 ~ 65382590 (-)
G428131 NA non-coding downstream 94626 65369516 ~ 65369757 (-)
G428108 NA non-coding downstream 132945 65331224 ~ 65331438 (-)
G428100 NA non-coding downstream 140365 65323787 ~ 65324018 (-)
G428268 NA non-coding upstream 91289 65598331 ~ 65598560 (-)
G428269 NA non-coding upstream 91565 65598607 ~ 65598850 (-)
G428272 NA non-coding upstream 95338 65602380 ~ 65602588 (-)
G428273 NA non-coding upstream 95802 65602844 ~ 65603144 (-)
G428196 LOC106613830 non-coding upstream 136550 65643592 ~ 65643814 (-)
G427902 ubxn6 other downstream 452785 64999708 ~ 65011598 (-)
LOC110524332 LOC106613803 other downstream 553385 64903039 ~ 64911196 (-)
LOC110524330 LOC106613802 other downstream 731411 64701867 ~ 64810664 (-)
G427287 NA other downstream 896003 64566681 ~ 64568380 (-)
LOC110524398 LOC106613863 other upstream 1280009 66786837 ~ 66793995 (-)
lrrc7 LOC106613881 other upstream 2303563 67810595 ~ 67983549 (-)
bend5 LOC106584333 other upstream 2833162 68331871 ~ 68352828 (-)
G432310 LOC106613894 other upstream 3192779 68699821 ~ 68707448 (-)
G432338 NA other upstream 3243175 68748558 ~ 68755057 (-)

Expression


Co-expression Network