zgc:92140 (LOC106613825)



Basic Information


Item Value
gene id zgc:92140
gene name LOC106613825
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65520307 ~ 65550070 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021603925.2
TGAAGTGGTAATACGGTTCCCAGCCACACGCTGTAGCGCCAGCTCCCGCCTGACTGTCTGCGTAAAGCTCGGCGAATCTCAAGTGGACCGTGAAGGAACTGGTTCAGTAAACCACTTCTTCTTGTGCCCACTACaatggagagagaatgagaagaggTGCTCCAAGCAGAACATGAGAATGGAGACGTGCACAAAGAACAATAACACCACACTCAGAGgTGAGAGTGCGATgaggagaggagccagagagTGAGGCGATGGGCTGCACCTCTGCTAAGCAGGTGTCGGCCGTGCCCAGCGACGAGGAGGGCCGGGGCAAGGCCTACAGCAACGGAGACCTCTTCACCGacgaGTACAAGATGAAAGGAGTGGAGGAGGTGAAGTACATGCGTGGAGAGGAGGACCGGGTGAACGCACGCAACCAGGAGAACCTGGAGAAGACCTCTTTACAGTACAGGGGGAAACCGCACAAAGAAGGCTCTGGAGCCAACGCCAACAGGACAAATATCCACACATCAGAGAGCCAGCAGGAGTTCTTCAGGATGTTGGATGAGAAGATTGagaagGGACAAGACTACTGTTCAGAGGAAGAAGAGGCAGAGGATGGGACATAGCAAACAAGGCCTGACTCAACCCCCAACAGAGAGCCTCCCAGAGTGTGTGCGAGTGCATGTTCGTCTgaatcagtgtgtgtatgtttgttccACTGCCTTTGTATGTGattctgtatgtgtctgtgagCATGTAGGTTTTTTGTGTGTGAAAGCGAGATGGATAGCTATTCTCAAAGACTGTTGCCCCCCTCTTGGCTGTCGTCCCATTGGGCCCCTGAGTGGATTACTGGAGGGAGAGACGAACgaggagacatacagacagacatgtgGACTCACTGCCCTGCAGGACTATGGAGAGACGCACATGGAGACGGACATGCAAACCGACATGTGGACTCACTGCCCTGCAGGACTATGGAGggaccctcccctctaccccaaCTACCACCCCAGTGAACTGTACTGTGGTCCCTGGTCCAGCTTTGTGTATACCACCCCATGACTACAACATGGAGAAGGAGGACGAACAGAGGAAGAATGAGCATTATGGGAGTCTGGGAGACACCCTCCTGGTTTCCATCCTCCATGGCCCTGACTATTGTGCTTTGCTTGTGAGGAGCAGAGAtgtggatagagaaagagaggtgctGGGGAGGGGGAGGCACTTCCTTAACCCCCATCAGACAACGGAGGCTCGCTGCTGCAGTGGGCCAGAGGACCTGCgagagggtagggggaggggagggggagtaaAGAAAAACCTAGATATTTTAATAAGAGAAAGAAGAGTCAGTGAGTGGCTTATTTTGAAACTCTGAGCTCCTGCCTTTTTGAAGGACTTTTTTATTATGTTGATCCAGTTCattatttttagttttttttaatgtttttttgtttgttttgtttttggctTCTATCCTAGTGCATCACCTCCTGCAGGCTACAGCTCTATAGGTCAGAGTTCCTGTGTCACTACATAACCTGTCCTCTTAAATATACCCTCAACGCTAATATACCAGACCCTGGCTATGTGAAACACACTCAACTTCATATGCATAGATGCAGACACAGAAGTGCACACTCGTAC
>XM_021603924.2
CTGGTAAAATGACGCAAACCATAGTTTACGTTCAGTGAAGTGGTAATACGGTTCCCAGCCACACGCTGTAGCGCCAGCTCCCGCCTGACTGTCTGCGTAAAGCTCGGCGAATCTCAAGTGGACCGTGAAGGAACTGGTTCAGTAAATTCTCCCAAACAGAGGATCTGTTATTTGTACATCGTCCTCCCTCCCCCACAGCCACTTCTTCTTGTGCCCACTACaatggagagagaatgagaagaggTGCTCCAAGCAGAACATGAGAATGGAGACGTGCACAAAGAACAATAACACCACACTCAGAGgTGAGAGTGCGATgaggagaggagccagagagTGAGGCGATGGGCTGCACCTCTGCTAAGCAGGTGTCGGCCGTGCCCAGCGACGAGGAGGGCCGGGGCAAGGCCTACAGCAACGGAGACCTCTTCACCGacgaGTACAAGATGAAAGGAGTGGAGGAGGTGAAGTACATGCGTGGAGAGGAGGACCGGGTGAACGCACGCAACCAGGAGAACCTGGAGAAGACCTCTTTACAGTACAGGGGGAAACCGCACAAAGAAGGCTCTGGAGCCAACGCCAACAGGACAAATATCCACACATCAGAGAGCCAGCAGGAGTTCTTCAGGATGTTGGATGAGAAGATTGagaagGGACAAGACTACTGTTCAGAGGAAGAAGAGGCAGAGGATGGGACATAGCAAACAAGGCCTGACTCAACCCCCAACAGAGAGCCTCCCAGAGTGTGTGCGAGTGCATGTTCGTCTgaatcagtgtgtgtatgtttgttccACTGCCTTTGTATGTGattctgtatgtgtctgtgagCATGTAGGTTTTTTGTGTGTGAAAGCGAGATGGATAGCTATTCTCAAAGACTGTTGCCCCCCTCTTGGCTGTCGTCCCATTGGGCCCCTGAGTGGATTACTGGAGGGAGAGACGAACgaggagacatacagacagacatgtgGACTCACTGCCCTGCAGGACTATGGAGAGACGCACATGGAGACGGACATGCAAACCGACATGTGGACTCACTGCCCTGCAGGACTATGGAGggaccctcccctctaccccaaCTACCACCCCAGTGAACTGTACTGTGGTCCCTGGTCCAGCTTTGTGTATACCACCCCATGACTACAACATGGAGAAGGAGGACGAACAGAGGAAGAATGAGCATTATGGGAGTCTGGGAGACACCCTCCTGGTTTCCATCCTCCATGGCCCTGACTATTGTGCTTTGCTTGTGAGGAGCAGAGAtgtggatagagaaagagaggtgctGGGGAGGGGGAGGCACTTCCTTAACCCCCATCAGACAACGGAGGCTCGCTGCTGCAGTGGGCCAGAGGACCTGCgagagggtagggggaggggagggggagtaaAGAAAAACCTAGATATTTTAATAAGAGAAAGAAGAGTCAGTGAGTGGCTTATTTTGAAACTCTGAGCTCCTGCCTTTTTGAAGGACTTTTTTATTATGTTGATCCAGTTCattatttttagttttttttaatgtttttttgtttgttttgtttttggctTCTATCCTAGTGCATCACCTCCTGCAGGCTACAGCTCTATAGGTCAGAGTTCCTGTGTCACTACATAACCTGTCCTCTTAAATATACCCTCAACGCTAATATACCAGACCCTGGCTATGTGAAACACACTCAACTTCATATGCATAGATGCAGACACAGAAGTGCACACTCGTAC
>XM_021603927.2
CATCCTGGTAAAATGACGCAAACCATAGTTTACGTTCAGTGAAGTGGTAATACGGTTCCCAGCCACACGCTGTAGCGCCAGCTCCCGCCTGACTGTCTGCGTAAAGCTCGGCGAATCTCAAGTGGACCGTGAAGGAACTGGTTCAGTAAAgTGAGAGTGCGATgaggagaggagccagagagTGAGGCGATGGGCTGCACCTCTGCTAAGCAGGTGTCGGCCGTGCCCAGCGACGAGGAGGGCCGGGGCAAGGCCTACAGCAACGGAGACCTCTTCACCGacgaGTACAAGATGAAAGGAGTGGAGGAGGTGAAGTACATGCGTGGAGAGGAGGACCGGGTGAACGCACGCAACCAGGAGAACCTGGAGAAGACCTCTTTACAGTACAGGGGGAAACCGCACAAAGAAGGCTCTGGAGCCAACGCCAACAGGACAAATATCCACACATCAGAGAGCCAGCAGGAGTTCTTCAGGATGTTGGATGAGAAGATTGagaagGGACAAGACTACTGTTCAGAGGAAGAAGAGGCAGAGGATGGGACATAGCAAACAAGGCCTGACTCAACCCCCAACAGAGAGCCTCCCAGAGTGTGTGCGAGTGCATGTTCGTCTgaatcagtgtgtgtatgtttgttccACTGCCTTTGTATGTGattctgtatgtgtctgtgagCATGTAGGTTTTTTGTGTGTGAAAGCGAGATGGATAGCTATTCTCAAAGACTGTTGCCCCCCTCTTGGCTGTCGTCCCATTGGGCCCCTGAGTGGATTACTGGAGGGAGAGACGAACgaggagacatacagacagacatgtgGACTCACTGCCCTGCAGGACTATGGAGAGACGCACATGGAGACGGACATGCAAACCGACATGTGGACTCACTGCCCTGCAGGACTATGGAGggaccctcccctctaccccaaCTACCACCCCAGTGAACTGTACTGTGGTCCCTGGTCCAGCTTTGTGTATACCACCCCATGACTACAACATGGAGAAGGAGGACGAACAGAGGAAGAATGAGCATTATGGGAGTCTGGGAGACACCCTCCTGGTTTCCATCCTCCATGGCCCTGACTATTGTGCTTTGCTTGTGAGGAGCAGAGAtgtggatagagaaagagaggtgctGGGGAGGGGGAGGCACTTCCTTAACCCCCATCAGACAACGGAGGCTCGCTGCTGCAGTGGGCCAGAGGACCTGCgagagggtagggggaggggagggggagtaaAGAAAAACCTAGATATTTTAATAAGAGAAAGAAGAGTCAGTGAGTGGCTTATTTTGAAACTCTGAGCTCCTGCCTTTTTGAAGGACTTTTTTATTATGTTGATCCAGTTCattatttttagttttttttaatgtttttttgtttgttttgtttttggctTCTATCCTAGTGCATCACCTCCTGCAGGCTACAGCTCTATAGGTCAGAGTTCCTGTGTCACTACATAACCTGTCCTCTTAAATATACCCTCAACGCTAATATACCAGACCCTGGCTATGTGAAACACACTCAACTTCATATGCATAGATGCAGACACAGAAGTGCACACTCGTAC

Function


NR:

description
uncharacterized protein C1orf21 homolog

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021603925.2 False 1641 mRNA 0.51 7 65520307 65550031
XM_021603924.2 False 1728 mRNA 0.51 7 65520307 65550066
XM_021603927.2 True 1573 mRNA 0.51 6 65520307 65550070
Loading

Neighbor


gene id symbol gene type direction distance location
colgalt2 colgalt2 coding downstream 13265 65464383 ~ 65507042 (-)
rgl1 rgl1 coding downstream 65296 65407822 ~ 65455011 (-)
sema6bb LOC106613817 coding downstream 187133 65181687 ~ 65333174 (-)
rorca rorc1 coding downstream 382347 65121824 ~ 65137960 (-)
LOC110524345 sh3gl1 coding downstream 410928 65091180 ~ 65109379 (-)
LOC110524355 edem3 coding upstream 1275 65551345 ~ 65571173 (-)
fam78bb LOC106613832 coding upstream 128044 65678114 ~ 65681972 (-)
trabd2b LOC106613834 coding upstream 314548 65864618 ~ 65959260 (-)
LOC110524366 LOC106613835 coding upstream 495793 66045863 ~ 66050198 (-)
rfx2 LOC106613840 coding upstream 556767 66106837 ~ 66175123 (-)
G428165 NA non-coding downstream 84077 65435322 ~ 65436230 (-)
G428132 NA non-coding downstream 137717 65370116 ~ 65382590 (-)
G428131 NA non-coding downstream 150550 65369516 ~ 65369757 (-)
G428108 NA non-coding downstream 188869 65331224 ~ 65331438 (-)
G428100 NA non-coding downstream 196289 65323787 ~ 65324018 (-)
G428268 NA non-coding upstream 48261 65598331 ~ 65598560 (-)
G428269 NA non-coding upstream 48537 65598607 ~ 65598850 (-)
G428272 NA non-coding upstream 52310 65602380 ~ 65602588 (-)
G428273 NA non-coding upstream 52774 65602844 ~ 65603144 (-)
G428196 LOC106613830 non-coding upstream 93522 65643592 ~ 65643814 (-)
G427902 ubxn6 other downstream 508709 64999708 ~ 65011598 (-)
LOC110524332 LOC106613803 other downstream 609309 64903039 ~ 64911196 (-)
LOC110524330 LOC106613802 other downstream 787335 64701867 ~ 64810664 (-)
G427287 NA other downstream 951927 64566681 ~ 64568380 (-)
LOC110524398 LOC106613863 other upstream 1236981 66786837 ~ 66793995 (-)
lrrc7 LOC106613881 other upstream 2260535 67810595 ~ 67983549 (-)
bend5 LOC106584333 other upstream 2790134 68331871 ~ 68352828 (-)
G432310 LOC106613894 other upstream 3149751 68699821 ~ 68707448 (-)
G432338 NA other upstream 3200147 68748558 ~ 68755057 (-)

Expression


zgc:92140(LOC106613825) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

zgc:92140(LOC106613825) Expression in each Bioproject

Bar chart with 21 bars.
zgc:92140(LOC106613825) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network