LOC110524356 (LOC106613828)


Basic Information

Item Value
gene id LOC110524356
gene name LOC106613828
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65581422 ~ 65587007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603931.2
TCTACTTCCCTGACCCTTTCCATATCCGCTATTGACTATACTACACATTCCACCTGTGATCATACACACTTTTCACTCTTCTGACCTGAGAGGAGAGACCAAGCCAGCCTTTCTACTCAATAACAGTATCGCCAACTCTTGGAGAGAATGAAACTTTGGACATGTTTTCTTTGAGGCTATTGAAGCATAGCTGTTGTGAAATCTATTGGAATTTGATTAAATgtgtacaggagagagagaccgggacagACGGAGCCGGAGGGaatgagcgagggagaggggTGTGTGGTTTTGGCTGGGATAAGAAAAGAGATGGTTGGTCAGGAATCTGGCTGAAGGACAGTGGGAGGAGGAACACATGATGTTCAGAAGTCTCTCAGAGGAACTGAAGCTCTCTTCGAGCCTATGCTTTGGTACGGCAAGTTGGGTTATTGATAACAGAGCAATGGTTTGGTTTTATCTTGGGCTCTGGGTGTTCTTGTTGGGGTGTAGCCCCTCACAGCTGCATGGGCAGGTTATTCTAGGTAAGGGGGAAGTGTGTGGAGGGGCAGTGGAGGGCCAGTGTGACACCAACCTCACATGTGTGTCTGTGAAGCCCGCTGACAAGGAGCAAACACCCAGTGCTGGACTCTGCAGCCCTCCCCTTGCCCCAGGCTGTGTGCCATGCTCTGGAGTGCTGTGTCCCCATGCCAGGCGAGTCTGCCCTGGGGGACATGTCACTGAGCCGTGTGGCTGCTGCCCACAGTGTGCCCGTCAGATGGGCCAGGTGTGTGGAGGCCCCCACTGGGAGAAAGGCTACTGTGATAGAGACCTCACCTGCACCCTGTTCACCGGACGCAGCCCTGCCAGACCCCCACACACCGGCGTGTGCAAAGTGTTACATGGGCATCAGGCAGACCCCCTGGCAGACCCCCTATGCCCCTGGATGTGGGGCTGCAACGTCAGGGCAGGGGCCTGTGACTGCTACTCCCTACAGACTTGCCACGCTGCCTTCTCCTATCACAGTTTGGACCAATGTCTCAAAACAATGAGAGGGGATGAGCTCTGGAGTGAGATGGAGGAACAAGGGGAGCATACATGTGTGGAATGGGGCTGTGAGTTGCAGGgaagccagtgtgtgtgtatggagaggAGCTGCTACTCACCCACACCATTATTCTCTGAAGACACCTGTGAAAACATGCTGCAGAGAGCTCGCTGCAGCAATGTTAACTGCCCTGAGGTCCAAGTCCCTTCCTGCCCTGCTGATTCCTTCCTCACTGAGCCTTACATTCCTCATGGCCAATGCTGCCCTCTGGTGCCAGCTATCTGCACATGCAACTTCGATAAATGCCCGTTGGCACCCCCGACCTGTCCTCCTGGCCAGCAAGTCCACGGTGTGGAGAGCAGGGATGGTCTTCCAGGGGCTTGTTGCCACCAGTACCAGTGTGTGTAGGGTTAGGCACTGCTTAGGCAGCAAAGTTTGATGAGATGATGACAGACAAAGTAAAATAAGAGAGAAGGGGTAGACAGGCCAAAGGAAAGTGCCAGGACCTCAAACAGAGCTGGACTCGACAGACAGGACTCCACTGGTTAATAGCTGATGGATTGCATGGGCAATTTTATATGCATTATGACTCACACATTGCCTACAGTTTTTATTTCTGAAATCATGGCATTAATCGCTTTTTTGAGCAACGTTGCCTAAATGTAACTAAAACCATTTAACTAAATTCTAATACATTCTAATACATCACTGATAATGGGTTGGGAGGAATAGGCTATTGTGCCCGTGGTAGGATACTGGATGTCATGTGCATATTTTCATAATAAAGGAAACAATAGACCCCTCTTTTCAAA

Function

NR:

description
cysteine-rich motor neuron 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603931.2 True 1839 mRNA 0.51 5 65581422 65587007

Neighbor

gene id symbol gene type direction distance location
npl npl coding upstream 284 65571428 ~ 65581138 (+)
LOC110524352 NA coding upstream 116741 65460577 ~ 65464681 (+)
abhd17ab LOC106613821 coding upstream 185246 65388061 ~ 65396176 (+)
zgc:77486 LOC106613819 coding upstream 198809 65367186 ~ 65382613 (+)
plin3 LOC106613818 coding upstream 214557 65356112 ~ 65366865 (+)
sec22bb LOC106613829 coding downstream 129 65587136 ~ 65590748 (+)
notch2 LOC106613830 coding downstream 17112 65604119 ~ 65661449 (+)
slc35a3a LOC106613831 coding downstream 74955 65661962 ~ 65677841 (+)
foxe3 LOC106614014 coding downstream 116560 65703567 ~ 65705429 (+)
foxd2 LOC106613833 coding downstream 126459 65713466 ~ 65715867 (+)
G427793 NA non-coding upstream 63753 65515489 ~ 65517669 (+)
G427744 NA non-coding upstream 128781 65451281 ~ 65452641 (+)
G427736 NA non-coding upstream 145128 65435451 ~ 65436294 (+)
G427698 NA non-coding upstream 231446 65349497 ~ 65349976 (+)
G427687 NA non-coding upstream 248466 65332162 ~ 65332956 (+)
G427829 NA non-coding downstream 8767 65595774 ~ 65596022 (+)
G427838 NA non-coding downstream 19503 65606510 ~ 65643082 (+)
G427859 NA non-coding downstream 66669 65653676 ~ 65654077 (+)
G427860 NA non-coding downstream 69764 65656771 ~ 65657094 (+)
G427747 NA other upstream 60042 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 552720 65024444 ~ 65028828 (+)
G427476 NA other upstream 584284 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 1336893 64243153 ~ 64244790 (+)
sac3d1 sac3d1 other upstream 1402036 64177028 ~ 64183138 (+)
G428696 NA other downstream 555072 66142079 ~ 66142605 (+)
G429156 NA other downstream 1394942 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 1873722 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 2516172 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 2625709 68212224 ~ 68214236 (+)

Expression


Co-expression Network