sec22bb (LOC106613829)


Basic Information

Item Value
gene id sec22bb
gene name LOC106613829
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65587136 ~ 65590748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601272.2
GATTTGAGCGACACCCAAAGCACTAGCGTTTCCGGCCAGCTCAGCGCGTCCGGAGTGTTGTGTTGTCAATCTAGCTACTGCCTATCATTAGCTTTCACTTAGCGACACTGTGGCGATCACTAGTGGTGGACAATAACAAATTCAGTTCCAAAATGGTGCTGCTGACAATGATCGCTCGGTTGGCGGATGGACTGCCACTTGCCGCCTCAATGCAGGAGGACGAACAGGGAAGTGAGAAGTTGGGTCGGGACCTGCAACAGTACCAGAGCCAGGCTAAACAGCTGTTCAGGAAACTGAATGACCAGAGTCCCACACGTTGCACATTAGAGGCAGGATCCATGTCCTTTCACTACGTCATAGAAAAAGGAGTAGTTTACCTAGTGCTGTCTGAAGCAAGCTTTCCCAAAAAACTTGCCTTTGCTTACCTGGAAGACCTGCAGGCAGAGTTCCATGAACAGCACGGGAAGAAGGTCCCCACTGTGTCCCGGCCGTACTCCTTCATTGAGTTTGACACCTACATTCAGAAGACCAAGAAGTCCTACATAGACAGCCGAGCCCGTAGGAACCTGGGCAGCATCAACACAGAGCTGCAGGACGTCCAGAGGATCATGGTGGCCAACATTGAGGAAGTATTGCAACGAGGGGAGGCCTTGTCTGCTCTGGACTCCAAGGCCAGTAATCTGTCCAGCCTGTCAAAGAAGTACAGAAGCGATGCCAAGTACCTGAACACTCGTTCCACCTATGCTAAGCTGGCTGCAGGCGGGGTCTTCTTCATTATGCTTATCGTCTATGTCCGCTTCTGGtggctctgagagaggagaggagataggggaGGGGTTGGAGAAGAAGAGCTGGAAGAAGTTGAGCTCTGGTCTCACATTCTATCCAATATGGGATCCCTCCTTTTAACACAAGACTGTTGAAGACTTGTTTTTCCCAACTGTCTGTCCGTATATCTATAAAGTAATTACATGTTATGTTTTATTAGCAATTAGGTAGTCATCCTGTAGTGGTTATACCTTGGAGTTGAAAGAGTGTGAGTATTGCATGTGAGAATGTGAgaggaaatgtttgttttgtgtgtgtgttaccaaaTCCTGTATGATGACAAATCTTCTCTTATCAATTTAGTTGTGTATAGCAGTAAGAAAGAAAAATCTACATAGTTATATTTACCCAGAGGACATCATAAGGGCTTTGCCGTTAATAACACTATTATTATGTTGgcattgtggtttggtggagattTCTTAATGGTTAACCTGCTGTTCTGGTTGTGATCAATCACATTACATGTGATATTGGCTGCAGAAATAATATTCCTCATTCACCTTCGTCTTCACACTGAGAGATTGGAACAGTTtaacaccagaccagacacatTCATCAGTTGATGTCTAAAGGGGGCATCTTTTATTTTGTAAAAAGTTTACACAAGTGAAGACACcatgttaaaaaataataataatcaggaTGAGAATTGTAACTAGTTTATGTTATGTAGCTGGCTTATGCTAATCAGCGGCTGGATAGGATAATGAATTTCAACTTCACTGTTTCGTCTGCTATAAATAAAATTATTTTCACTGCA
>NM_001165250.1
GCGTCCGGAGTGTTGTGTTGTCAATCTAGCTACTGCCTATCATTAGCTTTCACTTAGCGACACTGTGGCGATCACTAGTGGTGGACAATAACAAATTCAGTTCCAAAATGGTGCTGCTGACAATGATCGCTCGGTTGGCGGATGGACTGCCACTTGCCGCCTCAATGCAGGAGGACGAACAGTTGGGTCGGGACCTGCAACAGTACCAGAGCCAGGCTAAACAGCTGTTCAGGAAACTGAATGACCAGAGTCCCACACGTTGCACATTAGAGGCAGGATCCATGTCCTTTCACTACGTCATAGAAAAAGGAGTAGTTTACCTAGTGCTGTCTGAAGCAAGCTTTCCCAAAAAACTTGCCTTTGCTTACCTGGAAGACCTGCAGGCAGAGTTCCATGAACAGCACGGGAAGAAGGTCCCCACTGTGTCCCGGCCGTACTCCTTCATTGAGTTTGACACCTACATTCAGAAGACCAAGAAGTCCTACATAGACAGCCGAGCCCGTAGGAACCTGGGCAGCATCAACACAGAGCTGCAGGACGTCCAGAGGATCATGGTGGCCAACATTGAGGAAGTATTGCAACGAGGGGAGGCCTTGTCTGCTCTGGACTCCAAGGCCAGTAATCTGTCCAGCCTGTCAAAGAAGTACAGAAGCGATGCCAAGTACCTGAACACTCGTTCCACCTATGCTAAGCTGGCTGCAGGCGGGGTCTTCTTCATTATGCTTATCGTCTATGTCCGCTTCTGGtggctctgagagaggagaggagataggggaGGGGTTGGAGAAGAAGAGCTGGAAGAAGTTGAGCTCTGGTCTCACATTCTATCCAATATGGGATCCCTCCTTTTAACACAAGACTGTTGAAGACTTGTTTTTCCCAACTGTCTGTCCGTATATCTATAAAGTAATTACATGTTATGTTTTATTAGCAATTAGGTAGTCATCCTGTAGTGGTTATACCTTGGAGTTGAAAGAGTGTGAGTATTGCATGTGAGAATGTGAgaggaaatgtttgttttgtgtgtgtgttaccaaaTCCTGTATGATGACAAATCTTCTCTTATCAATTTAGTTGTGTATAGCAGTAAGAAAGAAAAATCTACATAGTTATATTTACCCAGAGGACATCATAAGGGCTTTGCCGTTAATAACACTATTATTATGTTGgcattgtggtttggtggagattTCTTAATGGTTAACCTGCTGTTCTGGTTGTGATCAATCACATTACATGTGATATTGGCTGCAGAAATAATATTCCTCATTCACCTTCGTCTTCACACTGAGAGATTGGAACAGTTtaacaccagaccagacacatTCATCAGTTGATGTCTAAAGGGGGCATCTTTTATTTTGTAAAAAGTTTACACAAGTGAAGACACcatgttaaaaaataataataatcaggaTGAGAATTGTAACTAGTTTATGTTATGTAGCTGGCTTATGCTAATCAGCGGCTGGATAGGATAATGAATTTCAACTTCACTGTTTCGTCTGCTATAAATAAAATTATTTTCACTGC

Function

NR:

description
vesicle-trafficking protein SEC22b-B

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08517 SEC22; vesicle transport protein SEC22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601272.2 False 1591 mRNA 0.44 6 65587136 65590748
NM_001165250.1 True 1533 mRNA 0.44 5 65587181 65590747

Neighbor

gene id symbol gene type direction distance location
LOC110524356 LOC106613828 coding upstream 129 65581422 ~ 65587007 (+)
npl npl coding upstream 5998 65571428 ~ 65581138 (+)
LOC110524352 NA coding upstream 122455 65460577 ~ 65464681 (+)
abhd17ab LOC106613821 coding upstream 190960 65388061 ~ 65396176 (+)
zgc:77486 LOC106613819 coding upstream 204523 65367186 ~ 65382613 (+)
notch2 LOC106613830 coding downstream 13371 65604119 ~ 65661449 (+)
slc35a3a LOC106613831 coding downstream 71214 65661962 ~ 65677841 (+)
foxe3 LOC106614014 coding downstream 112819 65703567 ~ 65705429 (+)
foxd2 LOC106613833 coding downstream 122718 65713466 ~ 65715867 (+)
znf692 LOC107695246 coding downstream 463216 66053964 ~ 66058160 (+)
G427793 NA non-coding upstream 69467 65515489 ~ 65517669 (+)
G427744 NA non-coding upstream 134495 65451281 ~ 65452641 (+)
G427736 NA non-coding upstream 150842 65435451 ~ 65436294 (+)
G427698 NA non-coding upstream 237160 65349497 ~ 65349976 (+)
G427687 NA non-coding upstream 254180 65332162 ~ 65332956 (+)
G427829 NA non-coding downstream 5026 65595774 ~ 65596022 (+)
G427838 NA non-coding downstream 15762 65606510 ~ 65643082 (+)
G427859 NA non-coding downstream 62928 65653676 ~ 65654077 (+)
G427860 NA non-coding downstream 66023 65656771 ~ 65657094 (+)
G427747 NA other upstream 65756 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 558434 65024444 ~ 65028828 (+)
G427476 NA other upstream 589998 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 1342607 64243153 ~ 64244790 (+)
sac3d1 sac3d1 other upstream 1407750 64177028 ~ 64183138 (+)
G428696 NA other downstream 551331 66142079 ~ 66142605 (+)
G429156 NA other downstream 1391201 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 1869981 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 2512431 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 2621968 68212224 ~ 68214236 (+)

Expression


Co-expression Network