fam78bb (LOC106613832)


Basic Information

Item Value
gene id fam78bb
gene name LOC106613832
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65678114 ~ 65681972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603936.2
ATTCTTATCACCAGGCAGACACTTGATGAATGTGAGTAGCCTAGCAGTCATAGGCTATAGCCATTCAAGACATGGAGGAAATGCACATACTGTTACGGCCAAATAAAGGACTCCCGGCACTCCCACGCGCttattctccctctgctgttcattGGTTCACTCAGCATCATCAGCACCAAGGAAGCTGAACAGCGCCAGACGATGCATCGCtttgggagagaagaggaggcaaGACAGCATCCTTAATGTGTCCATACGGGGATTTTATCAAGCCATGCAGCAACAATTTGATACACTGATTTTCGGATTGGATAGAACTGTTGTCTATGATTTCTATGTTCTTGAACACTTGTTTTTCACCCGCTGATTTATCAAAGCGCGAGTCTGTTGTTCAGCCAATTCTGCAGAGGAAGCGTTGAATAAAAAATGGGGGATCTCCCTGCATTGACTGTGTTTTATCCTTCGTTTTACACTCATGGTGAGGAATGCCTGGTGGTCTAGATTGTCATCGCTCGGATCAAGCGCGCCTCGTGAGCCGCCAGCGCCGCTTCATAATGCATCACGACAACCACCCGACTGGGCCATTGACACGACGCCTCTGAGTGTGCCGCTCTCCCCCGGCTTGTGACATGACAGCCCGGGGACGAAAGAAGAGCATCAACCGGCACAGACCTGCAAGAGGACGTATGGATTTGAATCATTTTGAGGGGCTGGAGCCCACGGAAGCCCGGACTGGAAGAGAGGGCAGTGCCACGCAGACACGGATAGGCTACACTTGCGATCCGAGGCGTAGAGAGGATCCAATACCACCAACTGCTGTTATTTAATTAATCTGCTCCCCTGTCCTAAGATCTGACCACCTATCTGTTTTATCTTTGTGCATAAATGTAAATGGTACTGATTGCCTTTTTGGATGCATACAATGCATTGACTAATGTGACATATTAAGCATATTGTTTGTAAGTCGATAGGACGTGACAGTGTTATCATCCTGTCTGGTCCAACTGACTAGAACCCTAATCTCATCATGGGCTGCATACAGAGCATCGCCTGTAAATCGCGCATCAAACGCGAAAACATAGTGGTCTATGACGTTTCCGCCACTATCGATCACTCCCCGACAATCATTGAGGAGAACTCTCCTATAGTGTTGCGCTACAAGACGGCCTATTTCAAGGCCTCTGCACGGATAGTGATGCCCCCTATTCCCCGTAATGAGACTTGGGTGGTGGGTTGGATCCAGGCATGCACACAGATGGAATTCTACAACACCTACAATGACATTGGCATGTCTAGCTGGGAGCTACCAGAGCTGCGTGAAGGTCTTGTGAGGGCCATCAGTGACTCAGACGGGGTGAGCTACCCCTGGTACGGCAACACCACCGAGACGGTCACCCTGGCGGGGCCCACCTCCGAGCCCTTGCGCTTCACCGTCAGCATGAACGATAACTTCTACCCCAGTGTGACCTGGGCCGTGCCCATCAGCGACAGCAACCTGCCCCTGCTCACCCGCATCAAGAGGGACCAGAGCTTCACCACCTGGCTGGTGGCCCTCAACACGGCCACGCGGGAGAAGATCCTGCTGCAGACGGTCAAGTGGCGCATGAGGGTGGACATCTTGGTGGACCCCTCCATGCCCCTGGGCTCCAGAGCCACCCTGACGGGCCGGACGCACCAGGACCAGCCCCGCGTCCTAACCCACATGGAGCCCATCCCCCCCAACGCCCTGGGGAGGCCCAACGCCAACGACGCCCAGGTGCTGATGTGGAGGCCCAGGAAGGGCCCACCCCTAGTGGTCATCCCTCCTAAgtagcagagagagggaagggaggtgtAACTTGGGCCCAGACATCCTGCCATTATGAGATCAATATGGACAGAGACTTGTGGGACAGCCGCCTTAAATCCCCACCACTGCctttgagtagagagagaggactgctGCCTGGACCAGAGCCTAAATACAGACCAGACCCACAGAGGGACCTCTGCCTTAATAACATCCTCTGTCCTGGAGAAGCAGAGAGGACTAGTCCTTTGTGAGTGTTCCAGGCCCAGCAGGGCTCAGAGTAGGCTACACTCTAGGGGAGCAGCCTGTAGCCTACTGCACACCATGCTGCCTCACCGAGATGAGAGCAGCCATCTTTAATTACAGACTGTTCTGGCTCTATGACAGTGATGTAGAGGGTTGTGTCTCAAATGGAACCCCATTCCCCTTTGGCTCTGGTTAAAGGTAATGCACTATGTGGAGAATAGGTGGCCATTTGAGACTAACCTGAGGTGTGAGAGGCCCAGCAGTATATGTATGTGGCTTTATGGGTATAATACAGGTGAGATTGGGGAGTATAATGTATTTTATATGTAAGAACAAAGATTGTAGTACATTTAAATGCAGCCTTCATGCTCAGTACAGTTACAGACAAGGATGAATGTGTTACTGGTAGAAGGGGAAGACAGGCTCTCTATAGCCACCTACAGAATGGCCAATGAGAACAGCAGTGTGGGCCAGGTCAGGTATGATGTACAGAGGAGACAGTCTGAAAATGTAACAAAATGAACTCCACATGCTGCTCATTACTGAGGTGCAAACCATACTAGCCTTTACACTGATACACACATCCCCTCtgcgactacacacacacacacaccccctctgtgactacacccaagccataattCTATGAGGGACAAGTGGGTTGAATAGGATATTACAAATCAATTGTTTATATTGAAGGTCATATCACATACTGTGTATGGTGACAAACGTCCATTGAGAGCCAGTCATTCACAGTAACAGATGTGCCTGAGAACAGAATGACTCGGACTGGAGGATGAACAGAACTGTACATTCAATCATATGTACAGTGGGACAACGTAGGCAGGTATTCCAAAGGGTTTCATTATGGATGGGTGGGAGATTTAGCATGCAAGCATTGTTTTTAATTCAATAAAATGAAGGTAAAACATG

Function

NR:

description
protein FAM78B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603936.2 True 2968 mRNA 0.50 2 65678114 65681972

Neighbor

gene id symbol gene type direction distance location
LOC110524355 edem3 coding downstream 106941 65551345 ~ 65571173 (-)
zgc:92140 LOC106613825 coding downstream 128044 65520307 ~ 65550070 (-)
colgalt2 colgalt2 coding downstream 171072 65464383 ~ 65507042 (-)
rgl1 rgl1 coding downstream 223103 65407822 ~ 65455011 (-)
sema6bb LOC106613817 coding downstream 344940 65181687 ~ 65333174 (-)
trabd2b LOC106613834 coding upstream 182646 65864618 ~ 65959260 (-)
LOC110524366 LOC106613835 coding upstream 363891 66045863 ~ 66050198 (-)
rfx2 LOC106613840 coding upstream 424865 66106837 ~ 66175123 (-)
mllt1a LOC106613842 coding upstream 531525 66213497 ~ 66241138 (-)
acer1 acer1 coding upstream 562408 66244380 ~ 66249228 (-)
G428188 LOC106613830 non-coding downstream 26487 65651301 ~ 65651627 (-)
G428194 LOC106613830 non-coding downstream 27470 65650127 ~ 65650644 (-)
G428200 NA non-coding downstream 29284 65648293 ~ 65648830 (-)
G428195 LOC106613830 non-coding downstream 31559 65646338 ~ 65646555 (-)
G428196 LOC106613830 non-coding downstream 34300 65643592 ~ 65643814 (-)
G428359 NA non-coding upstream 48729 65730701 ~ 65730985 (-)
G428369 NA non-coding upstream 60937 65742909 ~ 65743117 (-)
G428371 NA non-coding upstream 61750 65743722 ~ 65744226 (-)
G428373 NA non-coding upstream 70168 65752140 ~ 65752521 (-)
G428376 NA non-coding upstream 85410 65767382 ~ 65767743 (-)
G428132 NA other downstream 295524 65370116 ~ 65382590 (-)
G427902 ubxn6 other downstream 666516 64999708 ~ 65011598 (-)
LOC110524332 LOC106613803 other downstream 767116 64903039 ~ 64911196 (-)
LOC110524330 LOC106613802 other downstream 945142 64701867 ~ 64810664 (-)
G427287 NA other downstream 1109734 64566681 ~ 64568380 (-)
LOC110524398 LOC106613863 other upstream 1105079 66786837 ~ 66793995 (-)
lrrc7 LOC106613881 other upstream 2128633 67810595 ~ 67983549 (-)
bend5 LOC106584333 other upstream 2658232 68331871 ~ 68352828 (-)
G432310 LOC106613894 other upstream 3017849 68699821 ~ 68707448 (-)
G432338 NA other upstream 3068245 68748558 ~ 68755057 (-)

Expression


Co-expression Network