foxe3 (LOC106614014)


Basic Information

Item Value
gene id foxe3
gene name LOC106614014
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65703567 ~ 65705429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603937.2
GACGGCGAGGGCGACAGGGACTCAAATTCAGGCTCTCAAGTTAACATAGGGAGGGACCCGAAAGGCAGACACTGTCTCTGAGCAAAACAATACATCCCTTTTAACTTCATGGTGCCTGCATTTTTTTCAGCTGCTATTTGAAAAAGCTATTTCATTTCAAGCAtacataaaaacatatttttttatgaatCTTGAAAATTTCTCTTACTTTTCGGGCATGTGTAACATGACGGCTGAGTCACAGGACTCACCAGCCGAGCTAGCCAGCCCGCTGGTCATGTCGCCTAACGTGAGTCTGGACTCCCCTTTACCGCCATCGCCTCTGATGCTGCAGGCCCGGATCAAAGATGGGGTTCTGATCAAGTCTGAACCACGGGCAACAAGTCCGAACGCGGATCGAGAGGAGGGAGCTACTCTGGGCCAAACCGAGGAGCACCTGCCCACTGGGAGTAGACGTAGGAAGAGGCCCGTTCAGAGAGGGAAACCACCCTACAGTTACATCGCTCTCATTGCCATGGCCATCGCCAACTCCCCCGAGAGAAAACTCACACTTGGGGGTATTTATAAATTCATCATGGAACGTTTTCCCTTTTATCGAGAGAACTCAAAGAAGTGGCAAAACTCCATCCGCCACAACCTCACCCTCAACGACTGCTTTGTCAAGATTCCCCGGGAACCTGGAAGGCCTGGTAAGGGCAACTATTGGACTTTGGACCCCGCTGCTGAAGACATGTTCGACAACGGGAGTTTTCTGCGGAGGAGGAAAAGATTCAAGCGCACTGACGTAAGCACCTATCCTGGGTACATGCAGAGCTCTAGTGCGTTCACCCCGAACCCCATGGGCAGACCGGCATACCCCAACACCATGTACCCAGGAATAGGATCGGGTTACGGCTCGCAGCTGGCAGGGACCCCCCACCCGGTGATGCTGCATCATTATCAGACCCCTGCCGGGGTCAGTCAAGGACAGCCAAGGATGTTCAGCATCGACAACATCATCAGCCAGCAGTCGGTGATGCAGGGAGCAGAGCTCAACCCGCTGGGGTTAGGCGGTGGAGACTTGGGCACCATGTCTGCTAGCTGCTCCCTCACTGGCACTGACCCCTCCAACTGCTTCCAGATGCAGACTGTCAATCCCTCGGGGAATTCACTGGGCAGAGGCGGTGGGGGACTGTCATCAAACCTGGCACCCGGGTATCCTTACTCTTCCTCGGCATCCCCCCCACACCTACCTTCCATGATGCAGTCCAGTTTCTCTCCAGGTAGCTCTCAGGTGTACTGCACGGGGAACCGTCTGTCTCTACCCCCCGTGCGCTCCGGGTCTTGCGCGGAGCACACTGAGCAACTACTGGGTCTCTCCAGCACAATGAACTCTTACAACAACTCTTACATGAGACAAGCCAATTTTGCATCAGGATTAGATCGGTatatgtgaaaaactgatttttatAGAGACAAACAACGATAGAGCCTCAATTACATTCCATTTGAAATAGGTGTGAAACCTCATCTTTGTTTGAAATGCAAATCGACATTCCATTATagttgtgttcatatttcagtgcTATTGGTTCGTTTATCTTATGTGTTTTATAACATCAATATTGATGGGTTTTTAGATGTTCTGTAGCCTATCTACTTGTACTTCCTTGTCCGAGAACAATTCCAATTACTGAACCTTACATTTTTGTCATTGTCACCTGTAAAAAAAATAAGAGTTCTCAAACAATATTATTAGCCATATACCTGTATACTgttctattttgtgaaatgtaaATAGTTTATTTCTTTGTGAATTATATTGAAAGGCCTACATTGTTATTTACCGTGTTTGGTTGGtgtaataaatacatattttcataT

Function

NR:

description
forkhead box protein E4-like

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0002089 lens morphogenesis in camera-type eye biological_process
GO:0007389 pattern specification process biological_process
GO:0030878 thyroid gland development biological_process
GO:0060022 hard palate development biological_process
GO:0060023 soft palate development biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0006590 thyroid hormone generation biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09398 FOXE; forkhead box protein E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603937.2 True 1863 mRNA 0.48 1 65703567 65705429

Neighbor

gene id symbol gene type direction distance location
slc35a3a LOC106613831 coding upstream 25726 65661962 ~ 65677841 (+)
notch2 LOC106613830 coding upstream 42118 65604119 ~ 65661449 (+)
sec22bb LOC106613829 coding upstream 112819 65587136 ~ 65590748 (+)
LOC110524356 LOC106613828 coding upstream 116560 65581422 ~ 65587007 (+)
npl npl coding upstream 122429 65571428 ~ 65581138 (+)
foxd2 LOC106613833 coding downstream 8037 65713466 ~ 65715867 (+)
znf692 LOC107695246 coding downstream 348535 66053964 ~ 66058160 (+)
fcho1 LOC106613838 coding downstream 353665 66059094 ~ 66106566 (+)
acsbg2 LOC106613839 coding downstream 478234 66183663 ~ 66210856 (+)
LOC118964639 NA coding downstream 535111 66240540 ~ 66248348 (+)
G428321 NA non-coding upstream 5859 65697439 ~ 65697708 (+)
G427860 NA non-coding upstream 46473 65656771 ~ 65657094 (+)
G427859 NA non-coding upstream 49490 65653676 ~ 65654077 (+)
G427838 NA non-coding upstream 60485 65606510 ~ 65643082 (+)
G428365 NA non-coding downstream 31550 65736979 ~ 65737304 (+)
G428370 NA non-coding downstream 38293 65743722 ~ 65744337 (+)
G428374 NA non-coding downstream 51303 65756732 ~ 65757008 (+)
G428375 NA non-coding downstream 57257 65762686 ~ 65762936 (+)
G428379 NA non-coding downstream 64430 65769859 ~ 65770273 (+)
G427747 NA other upstream 182187 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 674865 65024444 ~ 65028828 (+)
G427476 NA other upstream 706429 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 1459038 64243153 ~ 64244790 (+)
sac3d1 sac3d1 other upstream 1524181 64177028 ~ 64183138 (+)
G428696 NA other downstream 436650 66142079 ~ 66142605 (+)
G429156 NA other downstream 1276520 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 1755300 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 2397750 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 2507287 68212224 ~ 68214236 (+)

Expression


Co-expression Network