foxd2 (LOC106613833)


Basic Information

Item Value
gene id foxd2
gene name LOC106613833
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65713466 ~ 65715867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603939.2
TCACGCAGGATACTTACTCTGTGCCTGTGCGTAAAGATATTCATACAGATATACAACAGTAGATTAACGGCCTAAAATACAAACGCATGCAAGAAAGAAATACTTAATTAATGATTAATGTACCTATTAATGAATAAAGACAGCTTGTAGTGAACCTCAAGTAAATAGCCTTACTGATGTATGACTTTTCCATTCAAGTTTTGTTTTCCTGCGCTTGAAGTCAGAAGAGTTTCTTCCTCGGTGAAACGAACCATAGCCTCCATACCAACTGGTTGGAGTGGCGTTACACCTGGTTACAAGCGTCGTCTTGCTCTCTTCTATATTCCAGTAATGTTTCTATGCAGCTCGTCGAATTAAACAGGAGTTAACAGTGGTCCTCCGAGGAGCTGGAGAGTGCTATACGCACGGACTGAGTACACCCAGCGTCGGAGCTGAAAAAACTCAGTACGGAacgagagggaggaagagaaccAGTCTCTCCAAGGATGACTCTAGGGACGGATATGTCGGACAACTCTGCTTTGTCTGATGATGTGGACATAGATGTGGTTGGGGGAGACATTTCCGTTGGCAAGGATGGGAAATACCTTCATCGCGATTTCCTAGACAATGACTCGGACGATAATTTGTCTCAGAACGCGGGGGAGAGGGGTTCCTCTCCCGGCCTCAGCAGCTCAGAGTGTCCGGCTGACCAGGTTGGAGTTGGTGGAGATTCAGGGGCCATGATAGGAGATAAGCCTGGTAAGAACGCTCTAGTCAAGCCCCCGTACTCCTACATAGCCCTGATAACCATGTCTATCCTCCAGAGTCCCAAGAAACGCCTCACTCTCAGCGAGATCTGCGAGTTCATCAGCAACAGGTTCCCGTACTATCGGGAGAAATTCCCTGCTTGGCAAAACTCCATTCGTCACAATCTTTCTCTCAATGACTGCTTTGTCAAAATCCCACGTGAGCCTGGCAACCCCGGAAAAGGCAACTACTGGACCCTCGACCCAGAGTCCGCCGACATGTTCGACAACGGGAGTTTTTTACGCAGGAGGAAGCGCTTCAAGAGGCACCAAGCCAACGAAATCCTCAGGGACGCTGGGGGGTTCCTGCCCGGGTTCGGATACGGCCCTTATGGGTACAACTATGGACTCCAACTGCAGAACTTCCATGCTCATAACCCCTATCATCCTCACCTCACAGCAGGCGCTTTCCCTTTCCATAATACACCTTGTGGACTCCCCTCGCCAGCCTCAATATTCCCCACGCCACATCCCCTGCCCTCTCTATTAGGGGCTGATTTACGAAAGCCATTCTACCCTCAACTAAGCCCTACCTTGCCCGGCCTGGCGCCTCTCAAGACGGACACTAACACGCCAATTCGGCCTTCTTTCTCGATAGACAATATAATCGGTGCAGCTAACTCCGTGGCCTCCCCGTACAGTGCACAGTCGGGCAGCCACAGTCACAGTCAGGCTCAGATCCTGGCCATGTTGAACCCTGCACTCACCTCAGCTTCGAACCACTTGAACCTCTCGCAGGAAACCATGCTTCAGCCTGGTTCACAGACATTCTCCAGCAAAACTGCAAATCTTAACATTTGTCATTTCTAAACTGGCAGCAAAAACAAAACTCGCAGAAATCCTACCCGTTATGGTTCTGTCGTCTTATGTGAAGGTAGGATAAACGTTCTTTGAGAAATAAGAGTGTTGCTCTACCCCCTTTTCTGATCGGAGAGAGGAAAGTTAAATGTATATTTATGGATTGTAAATATGTATAGGATACAATAAATGGAAGAAGCATGATGGTCAGATAGCAAATTCTAAGACAACATTAAGTGTATTCGTTGGCCCAGGCCCTCAACTATCTGAGCAAATATCCAGCTATTTTAACACAAGTTAAATGTCACGTATCTCACTCTGTGGGGAATATTTAATTGTTTCTTAACTATAATAGAGATTTTATTATGATTTGtattgttatatatatatgtgtgtgtatatatatatacatatgtatatacatatatatatatatattgtgcgTTGTGAGATAAGAGATAAAGCACTGTTAATACCGAGACCGCAAACTCAGGTTTTAATTGTTAGAAAGCACATTGAGACAAGGAGGGTTATTAAATACAAATCTAACCTTTCCCACTGCCCCTCGTTCCCTTAAAAGCGGTGTTGTGGTGACTTTGTATGGATATTATTTCATGTTGTCAGTGGACAGATATGTGGTTTTGGTGTAAAGCGCATTACCTCACATCCTGTTAAACTGTTGTGCTTTAGTTCCTATCTATTTCATTGAAATTAATATGTGAAACGTATGTTATGTGTATAGACAGAGACACTTAATGTTCATAGGTCATTTTTTGTTGTAATGACAAGAATAATAAATGTTTGTGAATTTAAAAA

Function

NR:

description
forkhead box protein D2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09397 FOXD; forkhead box protein D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603939.2 True 2402 mRNA 0.44 1 65713466 65715867

Neighbor

gene id symbol gene type direction distance location
foxe3 LOC106614014 coding upstream 8037 65703567 ~ 65705429 (+)
slc35a3a LOC106613831 coding upstream 35625 65661962 ~ 65677841 (+)
notch2 LOC106613830 coding upstream 52017 65604119 ~ 65661449 (+)
sec22bb LOC106613829 coding upstream 122718 65587136 ~ 65590748 (+)
LOC110524356 LOC106613828 coding upstream 126459 65581422 ~ 65587007 (+)
znf692 LOC107695246 coding downstream 338097 66053964 ~ 66058160 (+)
fcho1 LOC106613838 coding downstream 343227 66059094 ~ 66106566 (+)
acsbg2 LOC106613839 coding downstream 467796 66183663 ~ 66210856 (+)
LOC118964639 NA coding downstream 524673 66240540 ~ 66248348 (+)
LOC110524376 LOC106613845 coding downstream 624714 66340581 ~ 66349235 (+)
G428321 NA non-coding upstream 15758 65697439 ~ 65697708 (+)
G427860 NA non-coding upstream 56372 65656771 ~ 65657094 (+)
G427859 NA non-coding upstream 59389 65653676 ~ 65654077 (+)
G427838 NA non-coding upstream 70384 65606510 ~ 65643082 (+)
G428365 NA non-coding downstream 21112 65736979 ~ 65737304 (+)
G428370 NA non-coding downstream 27855 65743722 ~ 65744337 (+)
G428374 NA non-coding downstream 40865 65756732 ~ 65757008 (+)
G428375 NA non-coding downstream 46819 65762686 ~ 65762936 (+)
G428379 NA non-coding downstream 53992 65769859 ~ 65770273 (+)
G427747 NA other upstream 192086 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 684764 65024444 ~ 65028828 (+)
G427476 NA other upstream 716328 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 1468937 64243153 ~ 64244790 (+)
sac3d1 sac3d1 other upstream 1534080 64177028 ~ 64183138 (+)
G428696 NA other downstream 426212 66142079 ~ 66142605 (+)
G429156 NA other downstream 1266082 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 1744862 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 2387312 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 2496849 68212224 ~ 68214236 (+)

Expression


Co-expression Network