trabd2b (LOC106613834)


Basic Information

Item Value
gene id trabd2b
gene name LOC106613834
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65864618 ~ 65959260 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978104.1
tccctttcccctcaaaACCTACCTTCCCCTCCTCTTAAAATAAGCATTTGGGGAAAATATTCTAAGCGTACCACCTCCTCCACTCAACCAGCCAGGCTTCAAACTTCTAGAGCGCACTGCGAAAACTTTCCTCTGCAACTGCTGAAAAACCGACTGACACAGGACAGCGCCGAGTGAGAAGAGATAGGGAAAGTAGAACGCGTAGCCCGTTAATAGTTGCCTGGGGTTTGGGAATGGCGGAGAGTCGGAATGATCTATGTCCTCCTTCCGAATGGCACATGTGAGCCGAACCCTGTCTCCTACGGGTCTATTTTGTTACATGTTAGGAGGCGAAAGCCAGTAAAcagcgagaaagagacagggggaaGGTTGAAGTATCTACAACAGCCTGTCGACACCACTATCCTCTCATCTCGAGATGGTCTGTCCGCAAGGACTTCGATGGTTCCTGCTTACCGCTCTCTTGCACGCTGTCGCACCCCGGGACACCCGCGAGAGACCGAGGCAATGTGACCCACCGAAGTCGCAAACCGACATGAACTCTTTCCTCTGGACGGTGGAGCGCCCAGCTCCCTATCCCCCCTCCTATCTCTTTGGGACCATCCATGTGCCCTATACCCGTGTGTGGGACTTCATCCCAGATGTCTCCAAACGGGCCTTTCAGACCAGCGCCAACGTGTTCTTCGAGCTAGACCTGACTGACCCCCTGACCATCTCCAAGTTGACCAACTGCCAGTTGCTGCCCCACGGGGAAAACCTGCAGACCCTGCTGCCCCGGGACCTGTACCGCCGCCTCAAACGCCACCTGGACTATGTCAAGCACATGATGCCCTACTGGATGACGGCAGACCAGCGGGGCCGGGGGCTGTACGCTGACTACCTCTTCAATGCCATTGCAGGGAACTGGGAGAGGAAGAGGCCTGTGTGGGTGATGCTGATGGTTAACTCTCTGACGGAGTCAGACGTGAGGTCGCGGGGGACCCCCGTACTGGACCTGTTCCTGGCCCAGGAGGCCGACCGCATGGGGAAGAGGACAGGAGCGGTGGAGCGGGTGGAGGAGCAGTGTCACCCCCTCAACGGACTTAACTTCTCCCAGGTGGTGTTTGCTCTGAACCAGACCCTGCTGCAGCATGAGAGTGTGAGAGCAGGCAGTCTGCAGGGCTCCTTCACCACAGAGGACCTCATCACACACTATAACTGTGGAGACCTCAGCTCCATCATCTTCAACCATGACACTTCACAGCTccctcacttcatcaacagttcCCTACCGGCCCATGAGAGGACCACGGCGCTGCAGATTGACAGCTACTTCCGTCAGGAGCTCATCTACAAACGCAATGAGCGAATGGCACGCCGCATCTCCGCCCTCATCCAGCGAAACCCCTCCCAGACCTTCTTCTTTGCTTTTGGTGCAGGTCACTTCCTGGGGAACCACAGTGTGTTGGACATCCTGAGACAGGAGGGCTACGAGGTGGTGCACACACCATCACACTACCAGGAACCAATCCCAGATGTTCTGTTCCACAGAGAACCAACAGAGAACCCCAGCGATGGGGGCTCCGATGCGGGTAAAACCTCTCCCTATGACTGGGTGACCAGCCCCTCAGACCTGGATGGTAGCCTGGATGGTttggaggagctggaggatgaGGAGCTACCCCACATGCTGCTGCCAGACAGCCTGAGCCAGCTAGAGGAGTTTGGGAGACATAAGCGCCCTCGGAAGGCCCACCGCAGCCATGGCCGCCCACGCCTCTTCAGTGACCTGTGGGTCCGCATCGGTGACggCACCACAACTCCTCAGCCTAATGTGAGGATAACCAATGGCTATGTGACAGTGGAGCCTCTACTCACCCAccaggagcagaggaggaggacaggcctCTACCCTCCAGTGGAACCCCCCAGCCAGTCCTCACCCTCAGCGCTGCCCACCCCCAGCTCAGCCCAGTACACCATCGGCACCACCCACGCCCTCACCTGCCTACTAACGTTACTCACCTCACACCTGCTGTTCACCTCCTGACCACATGGTGGAGCTGTCTCCACAGACAAAAACTCATACTGTCTCTATACCTGAGCACCGTTATGTGCCAAGAACCCTAGAACATACAAATATCTACATATAAAGATTCTGCAAATGGGAACTGGAGGTGGAAATGAACTGCTATGGGCATGGAACTTACACAGAACATAGAACATGTAGACATGGATATGAGGGTAGAggacaacagacagacacaccaagGACTTCTGAGACAGAGCTGTCCGTCTTCAGGCTTCTGTGAAGGGAACAGGATCAGTCTGTGAAAAGTTATTTAAACTCTCAATGTGTGGAATAACTTTCACCCATGACAAATAGATAAACGGTCTCTATCAGAGAACTAATGGAAGATACTATATATACAACATCCATATTATGAAATTGTCAGTAGAGGCCAAGTCTTAAAATCACAAGAAAGCAATATGATAAATAATCATAATAAATGTTATTATTATGAATAATATTTGATATTAATGATGAGAATAGACATACTAATCACTATAATAACAGCTATAACTCTGTAATAAGGTCTGATATCTTAAAGACAGGATGTGGAGCACACATTGGACGTTTTTGTAAATTGTGCATTTTGTTCATAAAGAAATATTGTATATTTATTATTTCTCGAAGAGTATATTTTCATGCATTTGATGATTCCTGGAACAATAAACTTTTGGAAATTCCCTCAGGTTTCTT
>XM_021603941.2
ccctttcccctcaaaACCTACCTTCCCCTCCTCTTAAAATAAGCATTTGGGGAAAATATTCTAAGCGTACCACCTCCTCCACTCAACCAGCCAGGCTTCAAACTTCTAGAGCGCACTGCGAAAACTTTCCTCTGCAACTGCTGAAAAACCGACTGACACAGGACAGCGCCGAGTGAGAAGAGATAGGGAAAGTAGAACGCGTAGCCCGTTAATAGTTGCCTGGGGTTTGGGAATGGCGGAGAGTCGGAATGATCTATGTCCTCCTTCCGAATGGCACATGTGAGCCGAACCCTGTCTCCTACGGGTCTATTTTGTTACATGTTAGGAGGCGAAAGCCAGTAAAcagcgagaaagagacagggggaaGGTTGAAGTATCTACAACAGCCTGTCGACACCACTATCCTCTCATCTCGAGATGGTCTGTCCGCAAGGACTTCGATGGTTCCTGCTTACCGCTCTCTTGCACGCTGTCGCACCCCGGGACACCCGCGAGAGACCGAGGCAATGTGACCCACCGAAGTCGCAAACCGACATGAACTCTTTCCTCTGGACGGTGGAGCGCCCAGCTCCCTATCCCCCCTCCTATCTCTTTGGGACCATCCATGTGCCCTATACCCGTGTGTGGGACTTCATCCCAGATGTCTCCAAACGGGCCTTTCAGACCAGCGCCAACGTGTTCTTCGAGCTAGACCTGACTGACCCCCTGACCATCTCCAAGTTGACCAACTGCCAGTTGCTGCCCCACGGGGAAAACCTGCAGACCCTGCTGCCCCGGGACCTGTACCGCCGCCTCAAACGCCACCTGGACTATGTCAAGCACATGATGCCCTACTGGATGACGGCAGACCAGCGGGGCCGGGGGCTGTACGCTGACTACCTCTTCAATGCCATTGCAGGGAACTGGGAGAGGAAGAGGCCTGTGTGGGTGATGCTGATGGTTAACTCTCTGACGGAGTCAGACGTGAGGTCGCGGGGGACCCCCGTACTGGACCTGTTCCTGGCCCAGGAGGCCGACCGCATGGGGAAGAGGACAGGAGCGGTGGAGCGGGTGGAGGAGCAGTGTCACCCCCTCAACGGACTTAACTTCTCCCAGGTGGTGTTTGCTCTGAACCAGACCCTGCTGCAGCATGAGAGTGTGAGAGCAGGCAGTCTGCAGGGCTCCTTCACCACAGAGGACCTCATCACACACTATAACTGTGGAGACCTCAGCTCCATCATCTTCAACCATGACACTTCACAGCTccctcacttcatcaacagttcCCTACCGGCCCATGAGAGGACCACGGCGCTGCAGATTGACAGCTACTTCCGTCAGGAGCTCATCTACAAACGCAATGAGCGAATGGCACGCCGCATCTCCGCCCTCATCCAGCGAAACCCCTCCCAGACCTTCTTCTTTGCTTTTGGTGCAGGTCACTTCCTGGGGAACCACAGTGTGTTGGACATCCTGAGACAGGAGGGCTACGAGGTGGTGCACACACCATCACACTACCAGGAACCAATCCCAGAAGAACCAACAGAGAACCCCAGCGATGGGGGCTCCGATGCGGGTAAAACCTCTCCCTATGACTGGGTGACCAGCCCCTCAGACCTGGATGGTAGCCTGGATGGTttggaggagctggaggatgaGGAGCTACCCCACATGCTGCTGCCAGACAGCCTGAGCCAGCTAGAGGAGTTTGGGAGACATAAGCGCCCTCGGAAGGCCCACCGCAGCCATGGCCGCCCACGCCTCTTCAGTGACCTGTGGGTCCGCATCGGTGACggCACCACAACTCCTCAGCCTAATGTGAGGATAACCAATGGCTATGTGACAGTGGAGCCTCTACTCACCCAccaggagcagaggaggaggacaggcctCTACCCTCCAGTGGAACCCCCCAGCCAGTCCTCACCCTCAGCGCTGCCCACCCCCAGCTCAGCCCAGTACACCATCGGCACCACCCACGCCCTCACCTGCCTACTAACGTTACTCACCTCACACCTGCTGTTCACCTCCTGACCACATGGTGGAGCTGTCTCCACAGACAAAAACTCATACTGTCTCTATACCTGAGCACCGTTATGTGCCAAGAACCCTAGAACATACAAATATCTACATATAAAGATTCTGCAAATGGGAACTGGAGGTGGAAATGAACTGCTATGGGCATGGAACTTACACAGAACATAGAACATGTAGACATGGATATGAGGGTAGAggacaacagacagacacaccaagGACTTCTGAGACAGAGCTGTCCGTCTTCAGGCTTCTGTGAAGGGAACAGGATCAGTCTGTGAAAAGTTATTTAAACTCTCAATGTGTGGAATAACTTTCACCCATGACAAATAGATAAACGGTCTCTATCAGAGAACTAATGGAAGATACTATATATACAACATCCATATTATGAAATTGTCAGTAGAGGCCAAGTCTTAAAATCACAAGAAAGCAATATGATAAATAATCATAATAAATGTTATTATTATGAATAATATTTGATATTAATGATGAGAATAGACATACTAATCACTATAATAACAGCTATAACTCTGTAATAAGGTCTGATATCTTAAAGACAGGATGTGGAGCACACATTGGACGTTTTTGTAAATTGTGCATTTTGTTCATAAAGAAATATTGTATATTTATTATTTCTCGAAGAGTATATTTTCATGCATTTGATGATTCCTGGAACAATAAACTTTTGGAAATTCCCTCAGGTTTCT

Function

NR:

description
metalloprotease TIKI2-like

GO: NA

KEGG:

id description
K25185 TRABD2; metalloprotease TIKI

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978104.1 False 2743 mRNA 0.51 7 65864618 65959260
XM_021603941.2 True 2726 mRNA 0.52 7 65864619 65959259

Neighbor

gene id symbol gene type direction distance location
fam78bb LOC106613832 coding downstream 182646 65678114 ~ 65681972 (-)
LOC110524355 edem3 coding downstream 293445 65551345 ~ 65571173 (-)
zgc:92140 LOC106613825 coding downstream 314548 65520307 ~ 65550070 (-)
colgalt2 colgalt2 coding downstream 357576 65464383 ~ 65507042 (-)
rgl1 rgl1 coding downstream 409607 65407822 ~ 65455011 (-)
LOC110524366 LOC106613835 coding upstream 86603 66045863 ~ 66050198 (-)
rfx2 LOC106613840 coding upstream 147577 66106837 ~ 66175123 (-)
mllt1a LOC106613842 coding upstream 254237 66213497 ~ 66241138 (-)
acer1 acer1 coding upstream 285120 66244380 ~ 66249228 (-)
myo1f LOC100380684 coding upstream 294450 66253710 ~ 66283455 (-)
G428419 NA non-coding downstream 38895 65825433 ~ 65825723 (-)
G428381 NA non-coding downstream 86244 65778137 ~ 65778374 (-)
G428380 NA non-coding downstream 93286 65770991 ~ 65771332 (-)
G428376 NA non-coding downstream 96875 65767382 ~ 65767743 (-)
G428373 NA non-coding downstream 112097 65752140 ~ 65752521 (-)
G428589 NA non-coding upstream 40606 65999866 ~ 66011478 (-)
G428588 NA non-coding upstream 49024 66008284 ~ 66024739 (-)
G428610 NA non-coding upstream 66635 66025895 ~ 66036340 (-)
G428615 NA non-coding upstream 78932 66038192 ~ 66038559 (-)
G428620 NA non-coding upstream 80491 66039751 ~ 66039963 (-)
G428132 NA other downstream 482028 65370116 ~ 65382590 (-)
G427902 ubxn6 other downstream 853020 64999708 ~ 65011598 (-)
LOC110524332 LOC106613803 other downstream 953620 64903039 ~ 64911196 (-)
LOC110524330 LOC106613802 other downstream 1131646 64701867 ~ 64810664 (-)
G427287 NA other downstream 1296238 64566681 ~ 64568380 (-)
LOC110524398 LOC106613863 other upstream 827791 66786837 ~ 66793995 (-)
lrrc7 LOC106613881 other upstream 1851345 67810595 ~ 67983549 (-)
bend5 LOC106584333 other upstream 2380944 68331871 ~ 68352828 (-)
G432310 LOC106613894 other upstream 2740561 68699821 ~ 68707448 (-)
G432338 NA other upstream 2790957 68748558 ~ 68755057 (-)

Expression


Co-expression Network