fcho1 (LOC106613838)


Basic Information

Item Value
gene id fcho1
gene name LOC106613838
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66059094 ~ 66106566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978111.1
ATTTGCGCGCACACTGAAATCTGCCCAGAGAATTTGTGCCACTGCCCTAGTGCCTACTATCAAATCTCTTTGGGCAGGCTTCACCGTACGGCCGGTGCTGGACAGGTGAATGACTCAGGATGGAAAATGTACTATAAAGGTTTTCCAGAAAATACATACAGATCCCTATAAAACTCTCTGTGAAGATGGCGTTCTTCAAGAACAACTTCTGGGGGGACAAGAATGCAGGTTTTGACTTGCTGTACCACAACATGAAGCATGGCCAGATTGCTACCAAGGAGCTGGCAGAGTTTGTCCGCGAGAGGGCTGCCATCGAGGAAACCTACTCCAAGTCTATGAGCAAAATGGCCAAGATGGCAAGCAATGGAAGCCCACTAGGGACGTTTGCCCCTATGTGGGACGTGTTCCGGGTGTCATCAGACAAGCTGGCTCTCTGCCACCTTGAGCTGATGCGCAAGATGAACGACCTCATCCGGGACATCAACAAGTATGGTGACGAGCAGGTCAAAGTTCACCGCAAGACCAAGGAGGAGCAGGTGGCAACCCTGGAGTCTGTTCAGGCGGTTCAGGTCCAGAATGGTCACCTCCAGAAGTCCAGGGAGGGATACCACTCCAAGTGTATTGAGCTGGACAGACTGAGGAAAGAGGGAGCCCCCCAGAAAGAACTGGAGAAGgCGGAGCTGAAGTCTAAGAAAGCTGCCGAGTTGTTTGCTGTGTGTATAGAGAAGTATAACCGCGTGGGAGGAGACTTCGAGCAGAAGATGAGCGAATCAGCACAGAAGTTCCAGGACATTGAGGAGGCCCACCTGAGGCAGATAAAACAGCTTATCAAGGGATACTCTCACTCTATAGAGGACACCCACGTCCAGGTGGGACAGgTCCATGAGGAGTTCAAACAGAACGTGGAGAACATCGGCATAGATAACCTCATCCAGAGGTTTGCAGAGCAGAAGGGCACAGGGAAGGACAGACCAGCCCTGGTGGGGTTTGAGGAGTACATGACAGCTTCAGTACCTGAGGGGAGTAAGAAGAGTCGAGGAAAAGCCTTCAGGATTCCTGGACTGGGCAAGAGGGACAAAGAGCCAGACTCaacGGATTTGGCTGTGACGGAGACACCAAACTCTCCCCTGGAGGTGGATGAGGAGGGGTTTGTCATCCGAGCCGATGTCAATCAGAATGGCTGCTCGACGGAGGACAAGGAGAATGACTTCTACTCCAGCGACTCGGACTTTGACGACGAGGAGCCCAAGAAGTTCCACATCCAGATCCGTCCGGTGGGCAGCAGCAGCAACTCTGCTGCTACAGAGATGGAGCTGAAGGCCACCGTGGGGGCACTCACACTGCCCCCCAACAGAGGGGTGTCAGTGAAACGGCATCGCTCCAGAAACGGCAGTACTACAGGCCgttcagagggggagggagagggcgcCCCCCACAGGCAGGGAGAGCAGGATGGCCTACGCAATTCCATCTCCAGTCCAGATCACAGCAGGTTGAGTTCTACTGCGTCAGGCTCAGACAACCTCTTTGGACCTCCTCTGGAGTTGGCCTTTAAGTCCAAAAGCTTTGCTGGTAGAGAACAGCTACCGAGAGCAGAGAGTGTCTTTGGTGCATCTGAATATGCTGCCTTCTCCACTGACTCCTCCTCTCCTGAGAACGTAGAGGACTCTGGGCTGGACTCACCTTCCCATCAGCCCCTGGGCCCCTCCCCTGAGACAGCTGGTTGGGCAGCGTGGCCATCGGCAGGTCAGAGTAAAGAACCAGCAGGACTGGGCAGGCCAGCAGACCCCTTCCTTACTGCCTTTAGAGACCCCTCCCCAGGACGCAGCCCCCATCCCCCCCAGGACAACCCAGCCAGTATCTGGGCAGCTGCTCCTCGGTACCCCCGCCCCCCTCCAGACATGGACCTCTCAGCCCTCCACTTCCCGGTCTTCTCCCAGTCCCTGGTCCCTCCAGAGCTGGACCCGGCTCTGTGGAGCTGTAAACACATCCCTCCTGAAGACCCCTTCCTGGCTGCCTTTGAGAGGACCGTCGTCACCCAGGAGACCCTACCCCCCCCTGACGCCTGGGCCCCCCCACCTCCGCGCCCCTCCAGAGACGGGAGGGGGATAGAGGTACGGAGTGACCCCTTTTCCAGTGACAGTAAaaccctccccaccccctcctttTGCAAGGACATGGACCGGAAACGGGACCGTAGCGTCCCGCCCCCAGAATCACCTGACGACCCATTCGCCATCACTATGATTGGCAGCCCCACCCACCAGTCAGCCCTGGCTGCCGCGACAGGGGTTCTGACCCACAGTGTCAGCAGTAGTAGGTTGACCCCCAACGCCAAATCCCTCCCCTTATCCCAGCCGAAAAAGGAGCTGGTCCATTGGAACTCTGTCCACAACCCCTTCAGTGAGGGGACCTCGGCTGGGTCTCTGGCCCTGGtcaatgagggagggaggaagcaaCGCGAGTCATGCAGTGAAAGCGAGCTACGCAGGAGCGGCCTGCCTCTCACACTGCATTCTGGGCCACAGGAGGACCTGTGCTTCTCTACTGACAAAGACCAGAACTGTCTGGACCTGAACGCACCACAGCAATCCTGCAACATGGGCTCACACAAAGgTTCAAGGCATAGCTTCAGGCAGCACAGTGCAGAGCTGCTAGTGGCAGCCCCCCCCAGACCAGCCAGAGCCAAGAGGTCCTCAGGCAGACTGAGTGgctgtgagagaTCCAGGTCAGTGTGCTCATCTCCTCTGCCGGACCCCAGCCTGGACTtcacctcatcctcctcctccagcccTAGTGAGTGGGGGGCCCAGACCCATGCCACCAGCCCTGCTAGAGTGCATCTGTCTCGCGGGCCGAGCCCAATCTCCCTGAGCACCCAGGAGTCCTGGCCTGTGGCTGCAGCCATCACAGAATACATAAATGCTTACTTCAAAGGTGGACAGCATAACCGctGTCTGGTGAAGATCACAGGAGATCTCACCATGTCTTTTCCTGCTGGAATAACTTGTATCTTCACCGCTAACCCAAACGCCCCGGTCCTCAGCTTTCGATTGGTCAACATCTCCCGGGTTGACCACTTTCTGCCCAATCAGAAGCTGCTCTACAGTGACCCCTCTCAGAGTGACCCAGACACCAGGGACTTCTGGTTCAACATGCAGGCACTGAACCTTTACCTGCAGAGAGAGGCTGAGCTCAACCCTCTGGCCTCCTACTATAATGTGGCCCTACTCAAGTACCAGGTGTCGTCCCAGGACCCTGGTCGTGCTCCCCTCTTGTTGTCAGCAGAGTGCCAGCGGAGTGGCACAGTGACCCGTGTGTCCCTGGACTATCACTGCTGCCCGGCCACTGCCCCCTCCACCCAGCTCACTGCTGTGCAGGTGCTGCTACCCCTCGACCACACCGCCACAGACCTGCAGTGCCATCCCCCCGCATGCTGGAATACGAAGGAACGACGGCTACTGTGGAAGCTACCCAACCTCTCCCCCACCAACCAAAGCAAAGGCTCTGGCACTCTGTGTGCTAGCTGGCAGTGCCTAGAGGTTCCTCGCGGCCCTCCCCCCAGCCTGGCAGTCCAGTTTGTGGGATCGGGGGCCTCCCTTTCGGGCATGGACGTGGAGCTGGTGGGCAACCGTTACCGCATGTCCCTGGTAAAGAAGAGATTTGCCACAGGGAAGTACATGGCAGGCTGCACCTTGTGAGGAGGAGTAGGAATGCCCAGGTCCCCGTTGGGAGTTCCTGGAGTACACATTGCACTTTTAGGCCTCTGGGCCATACCAACCTAGTCGCccaggagggagagaacagacagacTAGGATGGTTTTGACGTTGGGACCACACATCGTGCTCactctttttttcccccacaaactTGTGACCAAACTCATTTTGGGACCTAGACTTTATTATTTTTGTATCTTTCAGCCTTGCGTCGTACACATAATCCTTTTCTCTTTGTACTGAATCTTGTTctgtttgcattgtgtgccttTATATCAGGAGTTAAACTGGATGTAAGAAGTTGGTTTTATTGAAGAGAAATTGTTTATGAATAAACATACTACTTGTCAAA

Function

NR:

description
F-BAR domain only protein 1-like

GO: NA

KEGG:

id description
K20042 FCHO; F-BAR domain only protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978111.1 True 4073 mRNA 0.56 27 66059094 66106566

Neighbor

gene id symbol gene type direction distance location
znf692 LOC107695246 coding upstream 934 66053964 ~ 66058160 (+)
foxd2 LOC106613833 coding upstream 343227 65713466 ~ 65715867 (+)
foxe3 LOC106614014 coding upstream 353665 65703567 ~ 65705429 (+)
slc35a3a LOC106613831 coding upstream 381253 65661962 ~ 65677841 (+)
notch2 LOC106613830 coding upstream 397645 65604119 ~ 65661449 (+)
acsbg2 LOC106613839 coding downstream 77097 66183663 ~ 66210856 (+)
LOC118964639 NA coding downstream 133974 66240540 ~ 66248348 (+)
LOC110524376 LOC106613845 coding downstream 234015 66340581 ~ 66349235 (+)
mob3a LOC106613847 coding downstream 243007 66349573 ~ 66355573 (+)
mknk2b LOC106613848 coding downstream 258953 66365519 ~ 66383789 (+)
G428626 NA non-coding upstream 7722 66051173 ~ 66051372 (+)
G428625 NA non-coding upstream 13893 66044527 ~ 66045201 (+)
G428576 NA non-coding upstream 24971 65983251 ~ 66034123 (+)
G428578 NA non-coding upstream 30526 66025153 ~ 66028568 (+)
G428637 NA non-coding downstream 567 66107133 ~ 66108885 (+)
G428669 NA non-coding downstream 3672 66110238 ~ 66110481 (+)
G428670 NA non-coding downstream 4421 66110987 ~ 66111208 (+)
G428671 NA non-coding downstream 5122 66111688 ~ 66111982 (+)
G428673 NA non-coding downstream 7258 66113824 ~ 66114409 (+)
G427747 NA other upstream 537714 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 1030392 65024444 ~ 65028828 (+)
G427476 NA other upstream 1061956 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 1814565 64243153 ~ 64244790 (+)
sac3d1 sac3d1 other upstream 1879708 64177028 ~ 64183138 (+)
G428696 NA other downstream 35513 66142079 ~ 66142605 (+)
G429156 NA other downstream 875383 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 1354163 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 1996613 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 2106150 68212224 ~ 68214236 (+)

Expression


Co-expression Network