LOC110524380 (LOC106614016)


Basic Information

Item Value
gene id LOC110524380
gene name LOC106614016
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66430271 ~ 66433596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603968.2
GTTTTCGGAGAATTAGATCCATGCCGTGGCGTACGAGGATAAGGCCTGCATTTCGAAAGTATTGGACTGTTGAGGTGGACTTCTTTGCCTCTAAAGCGCACGGGAATCGATTACATTTCTGCTGTTTTGTGAGCttttcagGGGCGCTATGAATGCTTTGAATTTCTGCGGGGGATCCAACAGTGGAGTCTATCCTCTACACAGCTTCAACTCCGTCTGTTTCGACCACCACCAGATGGCAGACCAGTACCAGGTTTATTCATTGGCCAATCCCTCCTCGGTTAACACGTTCTCTGTTGCTGAAAGACTTGCTGAGTTGATCTTGGAGGCCCGTTATGGGAACCAGCAAAAGCAACGTCGGAGCCGCACAGCCTTCACTGTGTCCCAGCTACAGGCTCTAGAGAAAGCCTTCCAACAGACCCAGTACCCTGATGTAAGCATGAGAGAAAGACTGGCTGTCTGCATCAACTTGCCTGAAGCTCGCATTCAGGTGTGGTTCAAGAACAGAAGAGCAAAGCTTCGTAAGGGACAGCGATGCTCCCCTCTTCGCAGAGAACAAAGCCTGGAGGAACCACATCAGACCAAGGCAGGAGGGGAAGGGAGCACTACTAAGGACTCCAAAACACAAAGCAAATTTGCTCCTCTCTGGGAAGTCAGTGATGCTCCTACCATTTCTTGTCCTGGAGACGCCATTGCAACTCAGGTCCACACAAGATTACATTATCCTCCCGTTTTTCCCTTTGTGTATGGAGAGCGGAACCACCTTCCACATCATCATGCTTTAGGGATGCTGTCAGCTGGCCTACATTTGACCCCCAAATTCTGGCCCATTCTACAGCAACACAGCCCGGCCTTAGGAGTTGCCCCACCGGTTGGTAAAAACTGCAGCCTTTCCCTTCAGACTTTCTTTCCCAGTAAAGCTGTACACCACCCCAATTTGGGTCTATAACTTCTCTGCAGTGTGTAATGGCAAAAAGGGACTGGTACACTGGTATCAATAcggacacataaactactgattGTATACTTtgacactgtacatactgtatgtatgtgtgaagGACCTCTGACAAGTGATTATGTCTGTAGATGATTAGATTGATTAAGAAACACTCAAGGTATGTTGTGAGCATTCAGGATCGCAATCAGGAGTGGATTGGTACATACTTCATTTGCATAGAGATGTTAGTCAGT

Function

NR:

description
diencephalon/mesencephalon homeobox protein 1-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603968.2 True 1194 mRNA 0.48 4 66430271 66433596

Neighbor

gene id symbol gene type direction distance location
rexo1 LOC106613849 coding upstream 17844 66401096 ~ 66412427 (+)
mknk2b LOC106613848 coding upstream 46482 66365519 ~ 66383789 (+)
mob3a LOC106613847 coding upstream 74698 66349573 ~ 66355573 (+)
LOC110524376 LOC106613845 coding upstream 81036 66340581 ~ 66349235 (+)
LOC118964639 NA coding upstream 181923 66240540 ~ 66248348 (+)
csnk1g2b csnk1g2 coding downstream 1075 66434671 ~ 66480586 (+)
LOC110524383 LOC106613850 coding downstream 48966 66482562 ~ 66490073 (+)
LOC110524384 LOC106613851 coding downstream 86241 66519837 ~ 66634272 (+)
osbpl1a LOC106613854 coding downstream 243232 66676828 ~ 66704143 (+)
LOC110524391 LOC106613857 coding downstream 335418 66769014 ~ 66776718 (+)
G428841 NA non-coding upstream 66458 66363553 ~ 66363813 (+)
G428822 NA non-coding upstream 98811 66330913 ~ 66331460 (+)
G428805 NA non-coding upstream 118525 66310817 ~ 66311746 (+)
G428804 NA non-coding upstream 120811 66307570 ~ 66309460 (+)
G428763 NA non-coding upstream 134859 66268550 ~ 66295412 (+)
G428912 NA non-coding downstream 64764 66498360 ~ 66498598 (+)
G428918 NA non-coding downstream 72683 66506279 ~ 66506618 (+)
G428922 NA non-coding downstream 76306 66509902 ~ 66510264 (+)
G428857 NA non-coding downstream 223139 66656735 ~ 66658029 (+)
G428992 NA non-coding downstream 237649 66671245 ~ 66697999 (+)
G428696 NA other upstream 287666 66142079 ~ 66142605 (+)
G427747 NA other upstream 908891 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 1401569 65024444 ~ 65028828 (+)
G427476 NA other upstream 1433133 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 2185742 64243153 ~ 64244790 (+)
G429156 NA other downstream 548353 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 1027133 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 1669583 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 1779120 68212224 ~ 68214236 (+)
G434653 NA other downstream 4526014 70959610 ~ 70959932 (+)

Expression


Co-expression Network