LOC110524383 (LOC106613850)


Basic Information

Item Value
gene id LOC110524383
gene name LOC106613850
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66482562 ~ 66490073 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603974.2
AAACATACTGTGTGTAGGGGGCCAGTCTGTTCCAAGGCTAGATTACATTGAGTAGTCTGCACTTGGATGATATTGGTTTCTACAGGACTGGAAATGCAAATTGGAGAACCATGTCAAATTCATGGGTTTCGTTTTAACAGGCGGCATTGAAGACATGAGCACTCACTCTAAACATCATTTGGCCAGTGAATAGGAGTCTCTGGCCTGTGGGTGTAGGTTGAGACTCAGCCTGCGTAAAGTGTCTTTTGTTTTAGGACCTAGTTTGACCTAATCCTATGTTAAATCGTTTCAGCTGATCAAGCAGGGAAACAGTTTGATGTAATCCTAATTTGGCTGGTTTCAGTTTTCTAGCAATATTGTCGAGCGTTTTTGGAGTTGCCTTGCGCAATTAAGAAGTGTATCCTTAGCTCGCTTTTGGGGATATGAAAGGAAcctatttttttaaatcactgatatTGAAGTGAAATTGTTGGTAACAGTTATGTCTGACCAGTTGCTCTCTAATGAGCGGTCTTTACCCCTCTTCAGGCGGTTGTGTTACGCAGCTGGTCACTTTTTGAACGACCTTTGCGCGTCGTTATGGTTTACCTACCTATTGGTCTACTACCATTCCGTGCTTGGGTTCAAGAGCACATATGCAGGTGTATTGCTGTTTATAGGTCAAATAGCGGATGGTGTCTCCACGCCCCTTGTCGGTATCGAGTCGGATCGAACAGCTGGATGTGGATCATATGGCAAAAGAAAAACATGGCATTTAGTCGGCACTATCAGTGTACTTATCTCCTTTCCCTTCATATTTAACCCGTGTCTGGGATGTGGTGACAACACTCCACAGTGGGTGTGGCTCACCTATTTCACCCCCTTCATCATCATCTTCCAGTTTGGCTGGGCCGCCACCCAGATCTCCCACCTGTCACTCATCCCAGAGCTGGTGTCCAGTGAGCATGCCAAGGTGGAGCTCACTGCCTACAGGTATGCGTTCACGGTGGTGGCCAATATTACAGTGTATGCTGTGGCCTTGTTACTCTTTCACTTCCAGGCCCAGCAGACTGGAGATCCCTCTGTCACTGACAGCTTGGGTATTGTTGACATCCCCATATTCAGGGATCTGTCCCTCATTGTGCTGGGGATCGGGGCAGTGTTTTCTTTCGTCTTCCACCTGGGCACCCGAGAGAGGGTTCCTCACAGGGAAGAGCCAGGCTCGCAGAATGATGAGAGTCAACCCCTGATCTCCCCAACTTCCCATAACACCATACCCCAATCTCTCCTCCAATGGAATCATTGGCTGAAGGAGCCTTCATTTTACCAGGTTGCTTTTCTGTACATGTGCACCAGGTTGATAGTCAACTTGTCCCAGACCTACGTTTCCATGTATCTCATCAACTCCTTATTGCTACCAAAGAACTTCATTGCCACCATTCCTTTAGTGATGTATGTCAGTGGGTTTGTGTGTTCTCTGGTCATGAAGCCAATCAGCAAGTTTGTAGGCATTAGTATGACTTATTTGCTAGGCCTCGTGCTGATCCTGGGGTTTTCCTCCTGGGTGTTGGTGGGCATGAACATAGGGAGGCTGATCTATGGAGCTGCTGTACTGCTGGGTGCAGGCTCTGCCACCATCCTGGTCATGTCGCTCTCCATGACGGCAAAACTGATTGGAGAACAGACGCAAAGTGGGGCCTTTGTGTACGGGGCGATGAGCTTCACAGATAAGGTGGCCAATGGCATTGGTGTCATCATAATCCAGAGACTGCATCCCTGCAATTCACAAGACAGCTGTCCAGAAAGTGTGTGGTTCTATCGTGATGTCATGGTGATTGTGACCGGGGGTGTGGCCTTAGCAGCAGCAATTTCCCTATGCACCCTCCTCATCTGGCCTATTAGGATCCGCCAACGTTTACCCAGTACTTCTGTCCAGATGGAGGCAGAAGACAGAGAATGAAACTACACAGGAGTCAACTGAAGAACAGATTCTTTACACTGATTAATCTGTGGGGAAAACATTGTGCCTGTTCATAGGACAAAGACCAGGAGACTTTCAGTATACCCATTGGAAATACAACAGGAACTTTACAGCAAGACTTTAACACccccatatctatctatctaccttttAAGCGATTTAGATTTACTGCATTTATGGGGAATTTATGGGGGGAAGAAaataatttttttaatgtttatttaactaggcatgtcagtgaagaacaaattcttatttacaatgatggataCCAATAAATGGGTACAATATTCTACTTTATAATAATACTGCGTACTGGACGCCTACTTACAGACATGTCAATGTTTTACACTTAAAAGGGAATCACTTTTTTCTTCCATAGATGTTATTATGTATTGTCTATTGTCTCCATTATTTCCTTCAGATTTTCATTGTATAGATTTTTAAATTGTCAGTAACGCAGAGATGTAAACTGTTTTTGGATGATTCTTTTCAGATTTAAAATGTTAATGTCTggtttattttaagattgtgagaGCTTTTGGACACGCTTGCCTGATGCATGGTGGGACAAAATGACTGCAATGCCTAGTTTTTTTTATGAAAATGCAGATGAGTTGTCTCTGAGGAATAAACATTTACGTCTCACTCACATCTTCACTGAGAGAGATCAGTACAGTTGCATACTATTTTCCACAGGTGGGCTCCCTGGGTAGCAATCGCAATTGACCACGTTGCAGGTTGGATTTATGTGG

Function

NR:

description
major facilitator superfamily domain-containing protein 12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603974.2 True 2715 mRNA 0.44 10 66482562 66490073

Neighbor

gene id symbol gene type direction distance location
csnk1g2b csnk1g2 coding upstream 1976 66434671 ~ 66480586 (+)
LOC110524380 LOC106614016 coding upstream 48966 66430271 ~ 66433596 (+)
rexo1 LOC106613849 coding upstream 70135 66401096 ~ 66412427 (+)
mknk2b LOC106613848 coding upstream 98773 66365519 ~ 66383789 (+)
mob3a LOC106613847 coding upstream 126989 66349573 ~ 66355573 (+)
LOC110524384 LOC106613851 coding downstream 29764 66519837 ~ 66634272 (+)
osbpl1a LOC106613854 coding downstream 186755 66676828 ~ 66704143 (+)
LOC110524391 LOC106613857 coding downstream 278941 66769014 ~ 66776718 (+)
LOC110524392 LOC106613859 coding downstream 286745 66776818 ~ 66785521 (+)
LOC110524394 LOC106613862 coding downstream 302549 66792622 ~ 66800072 (+)
G428841 NA non-coding upstream 118749 66363553 ~ 66363813 (+)
G428822 NA non-coding upstream 151102 66330913 ~ 66331460 (+)
G428805 NA non-coding upstream 170816 66310817 ~ 66311746 (+)
G428804 NA non-coding upstream 173102 66307570 ~ 66309460 (+)
G428763 NA non-coding upstream 187150 66268550 ~ 66295412 (+)
G428912 NA non-coding downstream 8287 66498360 ~ 66498598 (+)
G428918 NA non-coding downstream 16206 66506279 ~ 66506618 (+)
G428922 NA non-coding downstream 19829 66509902 ~ 66510264 (+)
G428857 NA non-coding downstream 166662 66656735 ~ 66658029 (+)
G428992 NA non-coding downstream 181172 66671245 ~ 66697999 (+)
G428696 NA other upstream 339957 66142079 ~ 66142605 (+)
G427747 NA other upstream 961182 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 1453860 65024444 ~ 65028828 (+)
G427476 NA other upstream 1485424 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 2238033 64243153 ~ 64244790 (+)
G429156 NA other downstream 491876 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 970656 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 1613106 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 1722643 68212224 ~ 68214236 (+)
G434653 NA other downstream 4469537 70959610 ~ 70959932 (+)

Expression


Co-expression Network