Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110524390 |
| gene name | LOC106613856 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 66720762 ~ 66736749 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| tetratricopeptide repeat protein 39C-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036978134.1 | False | 2924 | mRNA | 0.48 | 15 | 66720762 | 66736749 |
| XR_002473580.2 | False | 3010 | mRNA | 0.48 | 15 | 66720762 | 66736749 |
| XM_036978135.1 | True | 3022 | mRNA | 0.44 | 13 | 66722259 | 66734081 |
66,716,000
66,718,000
66,720,000
66,722,000
66,724,000
66,726,000
66,728,000
66,730,000
66,732,000
66,734,000
66,736,000
66,738,000
66,740,000
66,742,000
66,744,000
66,746,000
66,748,000
66,750,000
66,752,000
NC_048569.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110524389 | LOC106584359 | coding | downstream | 44053 | 66666537 ~ 66676709 (-) |
| LOC110524385 | NA | coding | downstream | 61624 | 66653328 ~ 66659138 (-) |
| LOC110524386 | NA | coding | downstream | 199390 | 66514473 ~ 66521372 (-) |
| LOC118964532 | LOC106614015 | coding | downstream | 328840 | 66389023 ~ 66391922 (-) |
| adamts10 | LOC106613844 | coding | downstream | 385417 | 66281727 ~ 66335345 (-) |
| LOC118964717 | LOC106584253 | coding | upstream | 15377 | 66752126 ~ 66764500 (-) |
| LOC110524398 | LOC106613863 | coding | upstream | 50088 | 66786837 ~ 66793995 (-) |
| cep19 | cep19 | coding | upstream | 62879 | 66799628 ~ 66801724 (-) |
| aqp12 | LOC106613865 | coding | upstream | 146940 | 66883689 ~ 66885402 (-) |
| ankmy1 | ankmy1 | coding | upstream | 318910 | 66978887 ~ 67068645 (-) |
| G429563 | NA | non-coding | downstream | 225 | 66720321 ~ 66720537 (-) |
| G429556 | NA | non-coding | downstream | 11847 | 66708275 ~ 66708915 (-) |
| G429457 | NA | non-coding | downstream | 176701 | 66543793 ~ 66544061 (-) |
| G429572 | NA | non-coding | upstream | 4321 | 66741070 ~ 66741457 (-) |
| G429574 | NA | non-coding | upstream | 8139 | 66744888 ~ 66748852 (-) |
| G429588 | NA | non-coding | upstream | 18376 | 66755125 ~ 66755342 (-) |
| G429593 | NA | non-coding | upstream | 24631 | 66761380 ~ 66761635 (-) |
| G429599 | NA | non-coding | upstream | 30944 | 66767693 ~ 66767896 (-) |
| G428132 | NA | other | downstream | 1338172 | 65370116 ~ 65382590 (-) |
| G427902 | ubxn6 | other | downstream | 1709164 | 64999708 ~ 65011598 (-) |
| LOC110524332 | LOC106613803 | other | downstream | 1809764 | 64903039 ~ 64911196 (-) |
| LOC110524330 | LOC106613802 | other | downstream | 1987790 | 64701867 ~ 64810664 (-) |
| G427287 | NA | other | downstream | 2152382 | 64566681 ~ 64568380 (-) |
| lrrc7 | LOC106613881 | other | upstream | 1073856 | 67810595 ~ 67983549 (-) |
| bend5 | LOC106584333 | other | upstream | 1603455 | 68331871 ~ 68352828 (-) |
| G432310 | LOC106613894 | other | upstream | 1963072 | 68699821 ~ 68707448 (-) |
| G432338 | NA | other | upstream | 2013468 | 68748558 ~ 68755057 (-) |
