LOC110524392 (LOC106613859)


Basic Information

Item Value
gene id LOC110524392
gene name LOC106613859
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66776818 ~ 66785521 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978136.1
AgctgtattcctggtcgtaatgctgAAAGCCATAGATCTTGCAAGCAAGGCTGCAGAGGAGGACAAAGCTAAAAACTATGAGGAAGCTCTCCGGTTGTACCAGCATTCTATTCAGTACTTCCTTCATGTTGTGAAGTATGAGGCCCAGGGAGACAAGGCCAAGCAAAGCATCAGGGCAAAGTGTGCAGAGTACCTGGACCGAGCAGAGAAGCTGAAGGAATACCTTAAGAAGAAGGAGAAGGCTCCTCCAGCCAAGCCTGTCAAAGAGTCTGGGTCTGATGACAAAGGGAATGAGAGTGATGAAGGTGAAGGTGACCCAGAGAAAAAGAAGTTCCAAAATCAACTCTCGGGTGCCATCGTCATGGAAAAGCCAAACATCAAGTGGAGTGACGTAGCTGGGCTTGAGGGTGCAAAAGAGGCCCTTAAAGAAGCTGTCATCTTGCCCATCAAATTTCCTCACCTCTTCACAGGAAAGCGGACTCCATGGAGAGGGATCTTGCTCTTTGGCCCTCCTGGTACAGGAAAGTCTTACCTGGCCAAGGCTGTGGCCACAGAAGCCAACAACTCCACCTTCTTCTCTATCTCCTCATCTGACCTGGTGTCAAAGTGGCTGGGGGAAAGTGAAAAGTTGGTGAAGAATCTGTTTAGCCTAGCCAGGGAGAACAAGCCCTCCATCATCTTCATCGATGAGATAGACTCTCTGTGTGGCTCCAGGAGTGAGAACGAGAGTGAAGCAGCCCGCCGCATCAAGACTGAGTTCCTGGTCCAGATGCAGGgTGTTGGAAATGACAATGATGGAGTCCTGGTTCTAGGAGCCACAAACATCCCCTGGACATTGGACTCTGCTATTAGGAGAAGGTTTGAGAAGCGGATCTACATCCCTCTGCCTGAGGAGCACGCCCGCTCCTTCATGTTCAAGCTACATCTAGGCTCCACCCCCAGTGAGCTCATTGAATCAGACTATGTGACCCTTGGTAAGAAGACAGAAGGCTACTCTGGAGCTGACATCAGCGTCATCGTGAGGGACGCCCTCATGCAGCCAGTCAGGAAAGTGCAGTCGGCCACTCACTTCAAACGGGTCCAAGGATCGTCATGGAACCATCCCAACCTCGTGGTAGACGACCTCCTGACCCCATGCTCACCAGGAGATCCAGACGCCATAGAGATGACCTGGATGGATGTTAATGGGGAGAAACTCATGGAGCCTGTTGTTTGCATGGCTGATATGCTGAGGTCACTGCACAACACCAAGCCAACCGTGAACGAGCAGGACTTGGATAAACTCAAGAAGTTCACAGAGGACTTTGGTCAGGAAGGCTAACACTCAACCAGATAATGCAAACCCAACTTTCCTTTCTCTTGTCCTTTTCCTCCACTGGTTCTCAGGCTTGTATTTACTATTCTACTTTCTCTCCAAGTTACAAAGGGGTTTCATGTATGTTGATTTGTTTGCTTATTCTGCTAATACATACCCATAGTACAttacttttttcttttttttacgaAGCCAGATAAGGTTGACTAATGTTTAAGATGGTGATGGTCTCAAAGAATATGGATTCAAGCAATGTATTCAGAATGTATGCTTTAAAACACTAAAGTGTCTGTTTTTGCCTTGATGGCATCAAACTAACAATGCATGGTGCATTACAGCAAACTCCTCCAAAAGGCCTTTACTCCTTGAAGTACATCTATGACTTGACAAGATAGATGAGGATTGCAGgttttgttgtactgtatggtgttAGGACCTAGTTAGTTTACTTGACTAGGACCTAGTTAAACTTGAACTTTAACTAGGACCTAGttaagtttttatttatttattcatgttGTATCCAAGAACGGCTAAGTCTGTAACGTTCACTCTGTGTTGGTGGAGTAGCACTCATTGAAGCGGACCATATCATGATTAAATATCAGCAACTTTAATTTGATTTCAACTTCCTTTCATTGTCTTTTTTTGTACAATATTCATATTATTTTGCTGTAGGCTGTTTTTGAAAGAAGGCATTAGTCTGAGTTCCTTGCTGTTCAACAGCAAGTAAAAGTACTTTGGGATGGGTGGGTGGGGCTATGTTATAATGAAATAAAACCCAATGATTGATCTGAAAGATGAATCAGTAATTGAGTGTGCAATAATGTTTGGTCATTTTTTTAACCTGTAGCCCTTCAATTGTACTTCATACATTTTTGCCCACTTCAAATGTTTTGTACAAGTTGTGCCTTGAAAGAGAATCAATGTATATCCTCTCTCACTTACTACTAAAGCCGATGAAACTTCAGACACCCTATGAAAGAGACACATATTCAGACAGTTACTTACTTATGATTGTATACAGTTCTTTCTATAACCTGACTTAACACAAAAAATGCTATAAATCTCAATGTACAGTATAGTCATTCATTCTCATTTGAGCTGTTCACAAATATTGTCTGGTCACTGGGATGAGATTAGTGTAGCGTTGAACAATGCTGAGAAGGGAGGGGTTTTTCTTCATAAAAGAAGAATGGTCATTATGTTTTCTTTTGAAAATACTGTTAACATCTATGGCTGTGGGGTTTCCTTAGAAATATATATTCAGGTTTTTTTTTCTGGGATGTTCCAGAGGTATCCAGTTGTGTTCTAATCTTGGTGTATATGTAAATAAAAATATTACTTATTGAAATTA
>XM_021603989.2
aaacagtgtggtgaagaaggagcaacaacgccacttcaacctcaggaggctgaagaaatttgtcttggcacctATAACCCTCAAGGGTCAGAAAAAGCTTTTACTCGTCTCCTTTCTGTTGCTGTCACGTGTACATCCATAGGCGGAAGTGACACTCGACATCTTGATGCGGAAGAGATTCCGAACAATTGAAGATTTCACCAAAATGATAACAAAACACTAACCAGAACTAATAACGTCGTGTTGTAGCTATTGTACGTTGATCTATTGAGACTAGAGTAAAGTTTTATTTTGGCAATTGTACGTATCCAGCAACCATGGCTAATAACAATTTACAGAAAGCCATAGATCTTGCAAGCAAGGCTGCAGAGGAGGACAAAGCTAAAAACTATGAGGAAGCTCTCCGGTTGTACCAGCATTCTATTCAGTACTTCCTTCATGTTGTGAAGTATGAGGCCCAGGGAGACAAGGCCAAGCAAAGCATCAGGGCAAAGTGTGCAGAGTACCTGGACCGAGCAGAGAAGCTGAAGGAATACCTTAAGAAGAAGGAGAAGGCTCCTCCAGCCAAGCCTGTCAAAGAGTCTGGGTCTGATGACAAAGGGAATGAGAGTGATGAAGGTGAAGGTGACCCAGAGAAAAAGAAGTTCCAAAATCAACTCTCGGGTGCCATCGTCATGGAAAAGCCAAACATCAAGTGGAGTGACGTAGCTGGGCTTGAGGGTGCAAAAGAGGCCCTTAAAGAAGCTGTCATCTTGCCCATCAAATTTCCTCACCTCTTCACAGGAAAGCGGACTCCATGGAGAGGGATCTTGCTCTTTGGCCCTCCTGGTACAGGAAAGTCTTACCTGGCCAAGGCTGTGGCCACAGAAGCCAACAACTCCACCTTCTTCTCTATCTCCTCATCTGACCTGGTGTCAAAGTGGCTGGGGGAAAGTGAAAAGTTGGTGAAGAATCTGTTTAGCCTAGCCAGGGAGAACAAGCCCTCCATCATCTTCATCGATGAGATAGACTCTCTGTGTGGCTCCAGGAGTGAGAACGAGAGTGAAGCAGCCCGCCGCATCAAGACTGAGTTCCTGGTCCAGATGCAGGgTGTTGGAAATGACAATGATGGAGTCCTGGTTCTAGGAGCCACAAACATCCCCTGGACATTGGACTCTGCTATTAGGAGAAGGTTTGAGAAGCGGATCTACATCCCTCTGCCTGAGGAGCACGCCCGCTCCTTCATGTTCAAGCTACATCTAGGCTCCACCCCCAGTGAGCTCATTGAATCAGACTATGTGACCCTTGGTAAGAAGACAGAAGGCTACTCTGGAGCTGACATCAGCGTCATCGTGAGGGACGCCCTCATGCAGCCAGTCAGGAAAGTGCAGTCGGCCACTCACTTCAAACGGGTCCAAGGATCGTCATGGAACCATCCCAACCTCGTGGTAGACGACCTCCTGACCCCATGCTCACCAGGAGATCCAGACGCCATAGAGATGACCTGGATGGATGTTAATGGGGAGAAACTCATGGAGCCTGTTGTTTGCATGGCTGATATGCTGAGGTCACTGCACAACACCAAGCCAACCGTGAACGAGCAGGACTTGGATAAACTCAAGAAGTTCACAGAGGACTTTGGTCAGGAAGGCTAACACTCAACCAGATAATGCAAACCCAACTTTCCTTTCTCTTGTCCTTTTCCTCCACTGGTTCTCAGGCTTGTATTTACTATTCTACTTTCTCTCCAAGTTACAAAGGGGTTTCATGTATGTTGATTTGTTTGCTTATTCTGCTAATACATACCCATAGTACAttacttttttcttttttttacgaAGCCAGATAAGGTTGACTAATGTTTAAGATGGTGATGGTCTCAAAGAATATGGATTCAAGCAATGTATTCAGAATGTATGCTTTAAAACACTAAAGTGTCTGTTTTTGCCTTGATGGCATCAAACTAACAATGCATGGTGCATTACAGCAAACTCCTCCAAAAGGCCTTTACTCCTTGAAGTACATCTATGACTTGACAAGATAGATGAGGATTGCAGgttttgttgtactgtatggtgttAGGACCTAGTTAGTTTACTTGACTAGGACCTAGTTAAACTTGAACTTTAACTAGGACCTAGttaagtttttatttatttattcatgttGTATCCAAGAACGGCTAAGTCTGTAACGTTCACTCTGTGTTGGTGGAGTAGCACTCATTGAAGCGGACCATATCATGATTAAATATCAGCAACTTTAATTTGATTTCAACTTCCTTTCATTGTCTTTTTTTGTACAATATTCATATTATTTTGCTGTAGGCTGTTTTTGAAAGAAGGCATTAGTCTGAGTTCCTTGCTGTTCAACAGCAAGTAAAAGTACTTTGGGATGGGTGGGTGGGGCTATGTTATAATGAAATAAAACCCAATGATTGATCTGAAAGATGAATCAGTAATTGAGTGTGCAATAATGTTTGGTCATTTTTTTAACCTGTAGCCCTTCAATTGTACTTCATACATTTTTGCCCACTTCAAATGTTTTGTACAAGTTGTGCCTTGAAAGAGAATCAATGTATATCCTCTCTCACTTACTACTAAAGCCGATGAAACTTCAGACACCCTATGAAAGAGACACATATTCAGACAGTTACTTACTTATGATTGTATACAGTTCTTTCTATAACCTGACTTAACACAAAAAATGCTATAAATCTCAATGTACAGTATAGTCATTCATTCTCATTTGAGCTGTTCACAAATATTGTCTGGTCACTGGGATGAGATTAGTGTAGCGTTGAACAATGCTGAGAAGGGAGGGGTTTTTCTTCATAAAAGAAGAATGGTCATTATGTTTTCTTTTGAAAATACTGTTAACATCTATGGCTGTGGGGTTTCCTTAGAAATATATATTCAGGTTTTTTTTTCTGGGATGTTCCAGAGGTATCCAGTTGTGTTCTAATCTTGGTGTATATGTAAATAAAAATATTACTTATTGAAATTA
>TU485818
AAATAAAACCCAATGATTGATCTGAAAGATGAATCAGTAATTGAGTGTGCAATAATGTTTGGTCATTTTTTTAACCTGTAGCCCTTCAATTGTACTTCATACATTTTTGCCCACTTCAAATGTTTTGTACAAGTTGTGCCTTGAAAGAGAATCAATGTATATCCTCTCTCACTTACTACTAAAGCCGATGAAACTTCAGACACCCTATGAAAGAGACACATATTCAGACAGTTACTTACTTATGATTGTATACAGTTCTTTCTATAACCTGACTTAACACAAAAAATGCTATAAATCTCAATGTACAGTATAGTCATTCATTCTCATTTGAGCTGTTCACAAATATTGTCTGGTCACTGGGATGAGATTAGTGTAGCGTTGAACAATGCTGAGAAGGGAGGGGTTTTTCTTCATAAAAGAAGAATGGTCATTATGTTTTCTTTTGAAAATACTGTTAACATCTATGGCTGTGGGGTTTCCTTAGAAATATATATTCAGGTTTTTTTTTCTGGGATGTTCCAGAGGTATCCAGTTGTGTTCTAATCTTGGTGTATATGTAAATAAAAATATTACTTATTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978136.1 False 2672 mRNA 0.43 11 66776818 66785521
XM_021603989.2 False 2985 mRNA 0.42 11 66777176 66785521
TU485818 True 580 lncRNA 0.33 1 66784937 66785516

Neighbor

gene id symbol gene type direction distance location
LOC110524391 LOC106613857 coding upstream 100 66769014 ~ 66776718 (+)
osbpl1a LOC106613854 coding upstream 72675 66676828 ~ 66704143 (+)
LOC110524384 LOC106613851 coding upstream 142546 66519837 ~ 66634272 (+)
LOC110524383 LOC106613850 coding upstream 286745 66482562 ~ 66490073 (+)
csnk1g2b csnk1g2 coding upstream 296232 66434671 ~ 66480586 (+)
LOC110524394 LOC106613862 coding downstream 7101 66792622 ~ 66800072 (+)
pigx pigx coding downstream 14921 66800442 ~ 66812587 (+)
pak2b pak2 coding downstream 27358 66812879 ~ 66839267 (+)
trnag-gcc-10 NA coding downstream 57778 66843299 ~ 66843369 (+)
trnag-gcc-11 NA coding downstream 63481 66849002 ~ 66849072 (+)
G429028 NA non-coding upstream 23365 66753235 ~ 66753453 (+)
G429001 NA non-coding upstream 69040 66707547 ~ 66707778 (+)
G428992 NA non-coding upstream 78819 66671245 ~ 66697999 (+)
G428857 NA non-coding upstream 118789 66656735 ~ 66658029 (+)
G428922 NA non-coding upstream 266554 66509902 ~ 66510264 (+)
rpp21 rp21 non-coding downstream 55176 66840697 ~ 66884634 (+)
G429102 NA non-coding downstream 100662 66886183 ~ 66886424 (+)
G429103 NA non-coding downstream 102139 66887660 ~ 66887884 (+)
G429767 NA non-coding downstream 286270 67071791 ~ 67072079 (+)
G429771 NA non-coding downstream 288154 67073675 ~ 67073875 (+)
G428696 NA other upstream 634213 66142079 ~ 66142605 (+)
G427747 NA other upstream 1255438 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 1748116 65024444 ~ 65028828 (+)
G427476 NA other upstream 1779680 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 2532289 64243153 ~ 64244790 (+)
G429156 NA other downstream 196428 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 675208 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 1317658 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 1427195 68212224 ~ 68214236 (+)
G434653 NA other downstream 4174089 70959610 ~ 70959932 (+)

Expression


Co-expression Network