pigx (pigx)


Basic Information

Item Value
gene id pigx
gene name pigx
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66800442 ~ 66812587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978151.1
CCTCATCATCCAGCTTGTTGAGGTCCTCCTCAGGGTCCAGGCGGAGGGAGGCTAGAGTGTGCTCCAGGCTGTGGCCCTGCATGTGATCCCGCAGCACTATATGAAGCCTCTCCAGCTGCCCCAATGAAACACTCTCCAGACGAGAACAGCTGTGGTTTGTCCATGACATGGCTGGAGACTGTATCAGTAACGATGGATGTCAGCAAAAATGGTTTTCACAGAGACCTGGTCACCACAGTTGACTTCGGTCCTGGTTTTCCAGATGGCCTCGAGGCTCTGCTTGTTCACAGACTACCCAGTGGGATCTATATTGATCAATACCAACTTGCATCTCTGAAAGAGGACACTGGTTTACAGGTGCTTTTGGGTTCAGCGGTTGACTTGGAGGCTCCAGCACACACATCTGAGGAATTCCTTGTTCTTGTGTATCCTGCTCTGGACCAAGGAATTCTCAAAGCAACACTCCCTATCCATGGCCGTTATCACAAGCCCTCTCTTGCAGGGAAGAGATTTGAACTTGTTGAAATTAAACTTCCAAAGCTAATACTCAGGACAGATACATgTACACAGCTCATTTCCTTCCCTCCTTACAAAATTGTGGACGCACCCTGCACTGTCCACAACTTAAGCATATGCCAATGGCTTGAGATCCAACATCTACAGgagCAGGATCCTGTGAGTTTGGAGATACCACTTGGTGATGGGTCTCTGGTGGAGCCTGTGTGTGCTGGAACTCTGCTTGTCACGCTGCTGTGCTGTGTCATCCTTTCAAGAAGTATCTGGATGCATGGTGTTTTTTTAGACAATGTTATACTGAtttaataatatactgtacagtaagaAATCCCCAGGGATTAATTTGCAACTAGACTATTTAGCTTTTTTCCCAATGACTTTTTAAAACATTAAATAATTGGCACACTG
>XM_036978150.1
GACCCAGCTAGTTTCTCAAACCTCGTCCAAATCTTGGGCTACACTCCAATTGCCTGTGCGCTATGGGTTGAAGATGGCTTCTACTTTTGTTCACAACGAGAACAGCTGTGGTTTGTCCATGACATGGCTGGAGACTGTATCAGTAACGATGGATGTCAGCAAAAATGGTTTTCACAGAGACCTGGTCACCACAGTTGACTTCGGTCCTGGTTTTCCAGATGGCCTCGAGGCTCTGCTTGTTCACAGACTACCCAGTGGGATCTATATTGATCAATACCAACTTGCATCTCTGAAAGAGGACACTGGTTTACAGGTGCTTTTGGGTTCAGCGGTTGACTTGGAGGCTCCAGCACACACATCTGAGGAATTCCTTGTTCTTGTGTATCCTGCTCTGGACCAAGGAATTCTCAAAGCAACACTCCCTATCCATGGCCGTTATCACAAGCCCTCTCTTGCAGGGAAGAGATTTGAACTTGTTGAAATTAAACTTCCAAAGCTAATACTCAGGACAGATACATgTACACAGCTCATTTCCTTCCCTCCTTACAAAATTGTGGACGCACCCTGCACTGTCCACAACTTAAGCATATGCCAATGGCTTGAGATCCAACATCTACAGgagCAGGATCCTGTGAGTTTGGAGATACCACTTGGTGATGGGTCTCTGGTGGAGCCTGTGTGTGCTGGAACTCTGCTTGTCACGCTGCTGTGCTGTGTCATCCTTTCAAGAAGTATCTGGATGCATGGTGTTTTTTTAGACAATGTTATACTGAtttaataatatactgtacagtaagaAATCCCCAGGGATTAATTTGCAACTAGACTATTTAGCTTTTTTCCCAATGACTTTTTAAAACATTAAATAATTGGCACACTG
>XM_021603993.2
TGGGTCCTTAATTTCAGTTTGTTTCCGTAAACACATGACGTAGCTGGCTGACATTTCTAGCATCGCCCAGGGTTTTCTGAAGACAATATATTCATGTTTGTATTTTTCAGCACATGTACTGTTTACTTGGTTCTTTTTGGATCAACGCAAGCAGACGAGAACAGCTGTGGTTTGTCCATGACATGGCTGGAGACTGTATCAGTAACGATGGATGTCAGCAAAAATGGTTTTCACAGAGACCTGGTCACCACAGTTGACTTCGGTCCTGGTTTTCCAGATGGCCTCGAGGCTCTGCTTGTTCACAGACTACCCAGTGGGATCTATATTGATCAATACCAACTTGCATCTCTGAAAGAGGACACTGGTTTACAGGTGCTTTTGGGTTCAGCGGTTGACTTGGAGGCTCCAGCACACACATCTGAGGAATTCCTTGTTCTTGTGTATCCTGCTCTGGACCAAGGAATTCTCAAAGCAACACTCCCTATCCATGGCCGTTATCACAAGCCCTCTCTTGCAGGGAAGAGATTTGAACTTGTTGAAATTAAACTTCCAAAGCTAATACTCAGGACAGATACATgTACACAGCTCATTTCCTTCCCTCCTTACAAAATTGTGGACGCACCCTGCACTGTCCACAACTTAAGCATATGCCAATGGCTTGAGATCCAACATCTACAGgagCAGGATCCTGTGAGTTTGGAGATACCACTTGGTGATGGGTCTCTGGTGGAGCCTGTGTGTGCTGGAACTCTGCTTGTCACGCTGCTGTGCTGTGTCATCCTTTCAAGAAGTATCTGGATGCATGGTGTTTTTTTAGACAATGTTATACTGAtttaataatatactgtacagtaagaAATCCCCAGGGATTAATTTGCAACTAGACTATTTAGCTTTTTTCCCAATGACTTTTTAAAACATTAAATAATTGGCACACTG

Function

symbol description
pigx Predicted to act upstream of or within GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human PIGX (phosphatidylinositol glycan anchor biosynthesis class X).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component

KEGG:

id description
K07541 PIGX; GPI mannosyltransferase 1 subunit X

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978151.1 False 924 mRNA 0.46 6 66800442 66812587
XM_036978150.1 False 880 mRNA 0.45 6 66801502 66812587
XM_021603993.2 True 939 mRNA 0.43 6 66801714 66812587

Neighbor

gene id symbol gene type direction distance location
LOC110524394 LOC106613862 coding upstream 370 66792622 ~ 66800072 (+)
LOC110524392 LOC106613859 coding upstream 14921 66776818 ~ 66785521 (+)
LOC110524391 LOC106613857 coding upstream 23724 66769014 ~ 66776718 (+)
osbpl1a LOC106613854 coding upstream 96299 66676828 ~ 66704143 (+)
LOC110524384 LOC106613851 coding upstream 166170 66519837 ~ 66634272 (+)
pak2b pak2 coding downstream 292 66812879 ~ 66839267 (+)
trnag-gcc-10 NA coding downstream 30712 66843299 ~ 66843369 (+)
trnag-gcc-11 NA coding downstream 36415 66849002 ~ 66849072 (+)
trnav-aac-7 NA coding downstream 37961 66850548 ~ 66850620 (+)
trnag-gcc-12 NA coding downstream 38583 66851170 ~ 66851240 (+)
G429028 NA non-coding upstream 46989 66753235 ~ 66753453 (+)
G429001 NA non-coding upstream 92664 66707547 ~ 66707778 (+)
G428992 NA non-coding upstream 102443 66671245 ~ 66697999 (+)
G428857 NA non-coding upstream 142413 66656735 ~ 66658029 (+)
rpp21 rp21 non-coding downstream 28110 66840697 ~ 66884634 (+)
G429102 NA non-coding downstream 73596 66886183 ~ 66886424 (+)
G429103 NA non-coding downstream 75073 66887660 ~ 66887884 (+)
G429767 NA non-coding downstream 259204 67071791 ~ 67072079 (+)
G429771 NA non-coding downstream 261088 67073675 ~ 67073875 (+)
G428696 NA other upstream 657837 66142079 ~ 66142605 (+)
G427747 NA other upstream 1279062 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 1771740 65024444 ~ 65028828 (+)
G427476 NA other upstream 1803304 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 2555913 64243153 ~ 64244790 (+)
G429156 NA other downstream 169362 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 648142 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 1290592 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 1400129 68212224 ~ 68214236 (+)
G434653 NA other downstream 4147023 70959610 ~ 70959932 (+)

Expression


Co-expression Network