rpp21 (rp21)


Basic Information

Item Value
gene id rpp21
gene name rp21
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66840697 ~ 66884634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604000.2
TATAAAATCCACAAGACAGTAAAAGCACCCTGGCTCCAGAGGTAGATCAGTTACCAGAGGGTTtatctagctatctagctaactaactagaAGCTTGTGAAGCTAGCTGAATTTGAGGCTACATATTTTCCTGTTGCCTGTTAGGTAGCTACTTACCATTCTGGGGATAcatataactagctagctagcatagctacctagctagcctaCATAGTTAGAAGTTAGCAGGCTCATTTAGCATAGCAATCCACATCTATGTAATGGCAGCAAACTTGAAAGACAAGGAAGCCTATCAAAGACTGAACTTTCTATATCAGGCTGCACACTGTGTTTTGTCTCAAACCCCTGAGAATGTGGAATTGGCTCGTTTTTACTGCTTCACTCAGAAGACCATTGCAAAACGTTTGGTGCTGAGACAAGACCCCTCTGTGAAAAGAACATTATGTAAGAAGTGCTGCTCTTTGCTGGTCCCAGGAGTAACTGCCACAGCCAGACAGAGAAGGATTAAGTACAGAAACCGCATGACTGTGCTGCAGTGTCTCAGCTGTGGACAGAGCAAGAGGTTCCTTAACAATCCGAAGCATCGCCTGTGGGTGGACCAGTATGAGGCCCAGCTGGAGAACCAATCACAGCCAGAACAAGGTCACTCCACTAAAGAGATGCAGAAGGAGAAAGCTGATGGACCCGTATCTCAGAAATCCTCTACAGGGCCTTCCTCTACCCAGCACCAGGTGTCTCCATCAAAGCCCTAAACCTGAGCCCTGTGGCCTCAGTAGCCTAGTCACAACTGGACATAGCCTATTTGTGTGGTATTGACACATATTTTCAACAatttcatttttaaaatttttttatATGAgcatattttctttttttttgctgtgttTTTTTTGCTGGTGACAACCTATTAGCATTACATCAGTGGTATTTCGGTAATGGATTATAGTTGTAATTGGTTGAGGTTGGTAAAaatgccccccaaaaatgtatggaTTGAGTTGTGTATACCTCAACTTGTTCACAATGTACAGTAAGTTCAGGAACGACAACCAATGTTAAATGTTTAATACACATGTTTATTTAAAATAGTTATTTTCAATTGATGTATTACTTCTGAAAGAACACAGGTTTTACATGAGATATAAAATTGTATCATACATGTACAGATCTTATTATTCTATAGCCCACCC
>TU486059
tgatttcctgcaagacaggaatgtcagtgttctgccatggccagcgaagagcccggatctcaatcccattgagcacgtctgggatcggagggtgagagctagagccattccccccagaaatgaccaggaacttgcaggtgccttagtggaagaatggggtaacatctcacagcaagaactggcaaatctggtgcagtccatgaggaagagatgcactgcagtacttaatgcagctggtggccactgaatgttacttttgattttgacccccctttgttcagggacacattattcaatttctgttagtcacatgtctgtggaacttgttcagtttatgtctcagttgttgaattttgttatgttcatacaactaTTTACACGTTAATtttgctgaaaattaacgcagctgacagtgagaggatttttctttttttgctgtTTTTTTGCTGGTGACAACCTATTAGCATTACATCAGTGGTATTTCGGTAATGGATTATAGTTGTAATTGGTTGAGGTTGGTAAAaatgccccccaaaaatgtatggaTTGAGTTGTGTATACCTCAACTTGTTCACAATGTACAGTAAGTTCAGGAACGACAACCAATGTTAAATGTTTAATACACATGTTTATTTAAAATAGTTATTTTCAATTGATGTATTACTTCTGAAAGAACACAGGTTTTACATGAGATATAAAATTGTATCATACATGTACAGATCTTATTATTCTATAGCCCACCCCTTTTTGTCAGTTTAACCTAAGGAGAGAATCAGCTGTTGAATATAGTGCTCAGTGCATAATGAAACATCCCAATAAGAACAAAATTGAGCATTGCATTCCTAATGCATTCTAGGTCTGTTATTGCCTAGGCTGAGGTGGATGATTTTTATATTCTTTCACTTTTTTTTAtctccctccccctttggcaCCTGGAAGTGGGTTTTCTGGGAATACAGCAGGTTCTTGGTAAAAATCCTGGGAATGTGGCCCATGTACAGGAGAAGGGCAAGGGTCATTCCTGAAAATAGGATATCTGTATTACCAGCTTGATAAGCAATTATGCCTCATTGTCAAGGATAAAGCCTTTTTTTATCAGGTGTTTGTATGTAAcaaaaatgttgtttgacttACCAAAAATGGGCCCAAGCCAGTAGACCACTGAGTACTCCGTAAAGGTGAACCCGGGACAGTAGAAGGTAAGGCCATAGGCCAGGGAGGGGTTCAGGAAAGCCATGGTATAATCACTGGCTGAAATACAAAGAAGATGAGTTCTCCGATCATTAATTTATTAATGCAGCGATCATctgcaaaaacagattttttttctgaCGCACAGATATAACATA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0001682 tRNA 5'-leader removal biological_process
GO:0004526 ribonuclease P activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604000.2 False 1190 mRNA 0.41 5 66881994 66884028
TU486059 True 1349 lncRNA 0.40 2 66840697 66884634

Neighbor

gene id symbol gene type direction distance location
trnav-aac-9 NA coding upstream 8033 66873889 ~ 66873961 (+)
trnav-aac-8 NA coding upstream 12344 66869578 ~ 66869650 (+)
trnag-gcc-13 NA coding upstream 16340 66865584 ~ 66865654 (+)
trnag-gcc-12 NA coding upstream 30754 66851170 ~ 66851240 (+)
trnav-aac-7 NA coding upstream 31374 66850548 ~ 66850620 (+)
gpc5b LOC106613866 coding downstream 7180 66891208 ~ 66987322 (+)
LOC110524403 LOC106613871 coding downstream 119129 67003157 ~ 67057676 (+)
trnaa-ugc-14 NA coding downstream 156019 67040047 ~ 67040117 (+)
LOC110524404 LOC106613872 coding downstream 195983 67080011 ~ 67288985 (+)
LOC110524406 LOC106613873 coding downstream 542299 67426327 ~ 67449696 (+)
LOC110524392 LOC106613859 non-coding upstream 96478 66776818 ~ 66785521 (+)
G429028 NA non-coding upstream 128541 66753235 ~ 66753453 (+)
G429001 NA non-coding upstream 174216 66707547 ~ 66707778 (+)
G428992 NA non-coding upstream 183995 66671245 ~ 66697999 (+)
G428857 NA non-coding upstream 223965 66656735 ~ 66658029 (+)
G429102 NA non-coding downstream 2155 66886183 ~ 66886424 (+)
G429103 NA non-coding downstream 3632 66887660 ~ 66887884 (+)
G429767 NA non-coding downstream 187763 67071791 ~ 67072079 (+)
G429771 NA non-coding downstream 189647 67073675 ~ 67073875 (+)
G429865 NA non-coding downstream 315569 67199597 ~ 67251340 (+)
G428696 NA other upstream 739389 66142079 ~ 66142605 (+)
G427747 NA other upstream 1360614 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 1853292 65024444 ~ 65028828 (+)
G427476 NA other upstream 1884856 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 2637465 64243153 ~ 64244790 (+)
G429156 NA other downstream 97921 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 576701 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 1219151 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 1328688 68212224 ~ 68214236 (+)
G434653 NA other downstream 4075582 70959610 ~ 70959932 (+)
pak2b pak2 coding upstream 1430 66812879 ~ 66839267 (+)
pigx pigx coding upstream 28110 66800442 ~ 66812587 (+)
LOC110524394 LOC106613862 coding upstream 40625 66792622 ~ 66800072 (+)
LOC110524391 LOC106613857 coding upstream 63979 66769014 ~ 66776718 (+)

Expression


Co-expression Network