lrrc40 (lrrc40)


Basic Information

Item Value
gene id lrrc40
gene name lrrc40
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 67802829 ~ 67810322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978177.1
AGCTACATCAATTAACAATTCAATATACATCGCTTTTTACAACGTTTATAATTCTGAAGAATGACTTTTACAATTAAATATTCACATTTGAACCGGAAATGATCGTTTTACCCAGAAAGGCTTATGAAATGCTTGGCTCCTAAATTTAGTTTTCTATCGGCAATTTATAAATACATtgcgagctagctagctaacattattggCATGACTAACAAGCTGGTTAGACAAAGTTAGTGGCACTAACAACATATGAACAATGTCACGCTTTAAAAGAGGTGCCAAAGTGGATTCTAGAGCAGGATTTAGATCAGAAAAAGAGGAACCGGGTGCGGTCCCTTATGGATTGTTGAAAACCGCCAGAAAAAGCGGGCAGCTCAATTTGTCTGGGCGAGGGCTGACTGAAGTCCCACAAAGTGTCTGGAGGCTGAACTTAGACACACCTGAGGAGGCCAAACAGAACTTGTCCTTTGGAGCAGATGATCGCTGGTGGGACCAGACAGATCTGACCAAGCTGCTTCTCTCTTCAAACAAGCTGGAAGCTCTGTCAGAGGATGTCAAGCTGTTGCCAGCCCTTACTGTTTTGGATGTCCATGATAATCAGCTTACCTCATTACCCATATCTATTGGAGAGTTGCAACATCTTCAGAAACTCAGTCTGAGTCACAATAAACTGAAAGAGTTTCCGGAGGAGATATGGAGTCTGAAGAACCTCACCTGTCTCCAGCTGCAGCAGAATCTACTGGAGCACCTGCCAGAGGGAGTGGGATTGCTCACTAACCTGGATGATATCGATCTTTCCAACAACCAGCTAACTGACGTCCCTGACAGTCTGGGCAACTTGAACCATCTGGTGAAGCTGAACCTCTCCCACAACAAGCTGAAGAGCCTCCCCTCAGGAATCAGTGTCATGAAAAATTTGAGACTGCTGGACTGCACACACAATCAGCTTGAGAGCATACCTCCTGTCTTGTCTCAAATGGCGTCTTTAGAGCAGCTCTATCTGAGACACAACAAACTGCGCTTTCTTCCTGAACTGCCCTCCTCAAGGCTCAAGGAGCTGCATGTTGGTAATAACCAGATTGAGGTGCTGGAGGCAGAGCACCTGAAACACCTGAGCACTCTGAGTGTATTGGAGCTGAGGGACAACAAGGTGAAGACTCTCCCTGAGGAAATCAAACTACTCCAAGGCCTGGAGCGCCTAGACCTAGTCAACAATGACATCAGCAGTCTGCCAGCTGCCCTTGCCCTCCTGCCCAAGCTGAAGATCCTGACTCTAGAGGGCAACCCTCTGAGAGGCATCCGCCGAGACCTCTTGACTAAAGGAACCAATGAATTGCTGAAGTACTTGAGGGGTCGAATAAAAGAGGATTCAGATGGCAAAGGAGATGAGCCTGACACTGCCATGACTCTGCCCAGTCAGGCGAAGATCAACGTGCACACCATTAAAACACGGAAGACATTGGactacagTGAGAAGCAGATGGCATGTGTTCCTGATGATGTGTTTGATGCTGTGGGAAGTGAGCCTGTTGCCAGTGTCAACTTCAGCAAGAACCAGCTGGCTGCAGTACCTCCCAGAAACAATCTTTTGACATCTCTACCAATGGAAATTGAGGCCCTAATGAAACTGCGGAGCATCACACTGTCATTCAACAGGTTTAAGTTGTTCCCAGAGGTGCTGTACCGGGTTCCTAGCCTGGAGACCATTCTTATCAGTAATAACCAAGTGGGAGCCATTAACCCACTGCAGCTCAAAGCTCTGGACAAGCTGTCCACTCTGGACCTgcagaacaatgacatcatgCAGGTGCCACCTGAACTGGGCAACTGTACGAGCCTGAGAGCCCTCATGCTGGATGGAAATCCTTTCCGCAACCCCAGAGCAGCCATTGTATCCAGAGGAACTGATGCTGTCCTGGAGTACCTACGAAGCAGGATCCCTACATAGTCAACTGCATTAAAGCCAAAtgagacacaacacacacaactacaacaTCAAATGAGAAAGTACAATTTTATGATTAATCAGTGTTTGTTTTTGGCTTGAAACTAACTGCCATTATTCTGTAAAAGTGTTCATGACATTCGAGCCTAATGATTTGAAGTGTACTTTCTCTTGTTTGATATAAGATATAAAGTTTGAATGATTACTACTGGGAGACTGCTGTAACAATGTTTACAAGATCTTCTACCAATGGCAATATTTGAATTGCATTCCAAGCTGAAAAGCCTGTCTTAGTGTGGGTTATTTTTCTCAATATATGGAAAAACAATAGCAATTCCACTAAGCTTATTCTTTAGGAAAGTTTTGCATTCAATGTTTAACATAATGTCTGGCAATTGCAAGATAATCTGACACTTCTACTGATTTGGCCTTGGCCTGTTTGATACTCTGATCCAAACGagacattttaaaatgttatatCATTCTCAATAATTCATTTGTAATGACATTGAGATAGTGTAACAACATATCTAATAGCctgaaaaaaaaacatctgttCTTCAGTTGCTTTTGATGTGAAACAGAAGAACTTGCATGCACTCTGTCATTGTATTCATGAAAACTGAGTAAGACAATTGAACCATGTctgtttcaatgactccaaccacaATAATGATTGAATTCCAACCACATTAAATGTGTACAAGGCA
>XM_021604011.2
CAATTAACAATTCAATATACATCGCTTTTTACAACGTTTATAATTCTGAAGAATGACTTTTACAATTAAATATTCACATTTGAACCGGAAATGATCGTTTTACCCAGAAAGGCTTATGAAATGCTTGGCTCCTAAATTTAGTTTTCTATCGGCAATTTATAAATACATtgcgagctagctagctaacattattggCATGACTAACAAGCTGGTTAGACAAAGTTAGTGGCACTAACAACATATGAACAATGTCACGCTTTAAAAGAGGTGCCAAAGTGGATTCTAGAGCAGGATTTAGATCAGAAAAAGAGGAACCGGGTGCGGTCCCTTATGGATTGTTGAAAACCGCCAGAAAAAGCGGGCAGCTCAATTTGTCTGGGCGAGGGCTGACTGAAGTCCCACAAAGTGTCTGGAGGCTGAACTTAGACACACCTGAGGAGGCCAAACAGAACTTGTCCTTTGGAGCAGATGATCGCTGGTGGGACCAGACAGATCTGACCAAGCTGCTTCTCTCTTCAAACAAGCTGGAAGCTCTGTCAGAGGATGTCAAGCTGTTGCCAGCCCTTACTGTTTTGGATGTCCATGATAATCAGCTTACCTCATTACCCATATCTATTGGAGAGTTGCAACATCTTCAGAAACTCAGTCTGAGTCACAATAAACTGAAAGAGTTTCCGGAGGAGATATGGAGTCTGAAGAACCTCACCTGTCTCCAGCTGCAGCAGAATCTACTGGAGCACCTGCCAGAGGGAGTGGGATTGCTCACTAACCTGGATGATATCGATCTTTCCAACAACCAGCTAACTGACGTCCCTGACAGTCTGGGCAACTTGAACCATCTGGTGAAGCTGAACCTCTCCCACAACAAGCTGAAGAGCCTCCCCTCAGGAATCAGTGTCATGAAAAATTTGAGACTGCTGGACTGCACACACAATCAGCTTGAGAGCATACCTCCTGTCTTGTCTCAAATGGCGTCTTTAGAGCAGCTCTATCTGAGACACAACAAACTGCGCTTTCTTCCTGAACTGCCCTCCTCAAGGCTCAAGGAGCTGCATGTTGGTAATAACCAGATTGAGGTGCTGGAGGCAGAGCACCTGAAACACCTGAGCACTCTGAGTGTATTGGAGCTGAGGGACAACAAGGTGAAGACTCTCCCTGAGGAAATCAAACTACTCCAAGGCCTGGAGCGCCTAGACCTAGTCAACAATGACATCAGCAGTCTGCCAGCTGCCCTTGCCCTCCTGCCCAAGCTGAAGATCCTGACTCTAGAGGGCAACCCTCTGAGAGGCATCCGCCGAGACCTCTTGACTAAAGGAACCAATGAATTGCTGAAGTACTTGAGGGGTCGAATAAAAGAGGATTCAGATGGCAAAGGAGATGAGCCTGACACTGCCATGACTCTGCCCAGTCAGGCGAAGATCAACGTGCACACCATTAAAACACGGAAGACATTGGactacagTGAGAAGCAGATGGCATGTGTTCCTGATGATGTGTTTGATGCTGTGGGAAGTGAGCCTGTTGCCAGTGTCAACTTCAGCAAGAACCAGCTGGCTGCAGTACCTCCCAGGGTTGTGGAGTTGAAGGACTCTGTTTCTGACATCAACCTGGGGTTTAACAAGCTGACCAGCCTCCCCTTGGAGTTTTGCATGCTGCAGCAGCTGGCACACATAGACCTCAGAAACAATCTTTTGACATCTCTACCAATGGAAATTGAGGCCCTAATGAAACTGCGGAGCATCACACTGTCATTCAACAGGTTTAAGTTGTTCCCAGAGGTGCTGTACCGGGTTCCTAGCCTGGAGACCATTCTTATCAGTAATAACCAAGTGGGAGCCATTAACCCACTGCAGCTCAAAGCTCTGGACAAGCTGTCCACTCTGGACCTgcagaacaatgacatcatgCAGGTGCCACCTGAACTGGGCAACTGTACGAGCCTGAGAGCCCTCATGCTGGATGGAAATCCTTTCCGCAACCCCAGAGCAGCCATTGTATCCAGAGGAACTGATGCTGTCCTGGAGTACCTACGAAGCAGGATCCCTACATAGTCAACTGCATTAAAGCCAAAtgagacacaacacacacaactacaacaTCAAATGAGAAAGTACAATTTTATGATTAATCAGTGTTTGTTTTTGGCTTGAAACTAACTGCCATTATTCTGTAAAAGTGTTCATGACATTCGAGCCTAATGATTTGAAGTGTACTTTCTCTTGTTTGATATAAGATATAAAGTTTGAATGATTACTACTGGGAGACTGCTGTAACAATGTTTACAAGATCTTCTACCAATGGCAATATTTGAATTGCATTCCAAGCTGAAAAGCCTGTCTTAGTGTGGGTTATTTTTCTCAATATATGGAAAAACAATAGCAATTCCACTAAGCTTATTCTTTAGGAAAGTTTTGCATTCAATGTTTAACATAATGTCTGGCAATTGCAAGATAATCTGACACTTCTACTGATTTGGCCTTGGCCTGTTTGATACTCTGATCCAAACGagacattttaaaatgttatatCATTCTCAATAATTCATTTGTAATGACATTGAGATAGTGTAACAACATATCTAATAGCctgaaaaaaaaacatctgttCTTCAGTTGCTTTTGATGTGAAACAGAAGAACTTGCATGCACTCTGTCATTGTATTCATGAAAACTGAGTAAGACAATTGAACCATGTctgtttcaatgactccaaccacaATAATGATTGAATTCCAACCACATTAAATGTGTACAAGGCA

Function

symbol description
lrrc40 Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in signal transduction. Predicted to be active in cytoplasm and intracellular membrane-bounded organelle. Orthologous to human LRRC40 (leucine rich repeat containing 40).

NR:

description
leucine-rich repeat-containing protein 40

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978177.1 False 2655 mRNA 0.44 14 67802829 67810322
XM_021604011.2 True 2758 mRNA 0.44 15 67802837 67810322

Neighbor

gene id symbol gene type direction distance location
LOC110524410 NA coding upstream 153302 67517412 ~ 67649527 (+)
sox2 sox2 coding upstream 178474 67622271 ~ 67624355 (+)
fxr1 fxr1 coding upstream 291424 67491153 ~ 67511405 (+)
LOC110524407 LOC106613876 coding upstream 339699 67458540 ~ 67464323 (+)
LOC110524406 LOC106613873 coding upstream 353133 67426327 ~ 67449696 (+)
depdc1a LOC106613883 coding downstream 176857 67987179 ~ 67995354 (+)
LOC110524415 LOC106613887 coding downstream 186032 67996354 ~ 68000277 (+)
LOC110524419 LOC106613886 coding downstream 199869 68010191 ~ 68052897 (+)
LOC110524422 gsh0 coding downstream 383430 68193752 ~ 68200853 (+)
LOC110524423 LOC106613476 coding downstream 401902 68212224 ~ 68214236 (+)
G430297 NA non-coding upstream 360819 67441733 ~ 67442010 (+)
G430285 NA non-coding upstream 366656 67435867 ~ 67436173 (+)
G430282 NA non-coding upstream 373942 67428684 ~ 67428887 (+)
G430744 NA non-coding downstream 163238 67973560 ~ 68002686 (+)
G430749 LOC106613888 non-coding downstream 248231 68058553 ~ 68058967 (+)
G430775 NA non-coding downstream 257942 68068264 ~ 68068617 (+)
G430787 NA non-coding downstream 278822 68089144 ~ 68089356 (+)
G429156 NA other upstream 754665 66981949 ~ 67048164 (+)
G428696 NA other upstream 1660224 66142079 ~ 66142605 (+)
G427747 NA other upstream 2281449 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 2774127 65024444 ~ 65028828 (+)
G430796 LOC106613888 other downstream 292857 68103179 ~ 68103534 (+)
G434653 NA other downstream 3149288 70959610 ~ 70959932 (+)
G434792 LOC106613943 other downstream 3408467 71218789 ~ 71223578 (+)
G434829 NA other downstream 3488293 71298615 ~ 71298900 (+)

Expression


Co-expression Network