depdc1a (LOC106613883)



Basic Information


Item Value
gene id depdc1a
gene name LOC106613883
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 67987179 ~ 67995354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021604012.2
CTGCCTCCAGAAGAAAGCTCGTAATTTTAAACAGTGTGGAATGCCACTGGTCGCTGCATCGACAATGTGGCACCGATAACCAACAAACTACAATAATTTGGGTTGTTTGCACGTTGATTCTAGCGTCAATATGATGAGTTCTCATATTGTCACTCCTGGGCCTTATAGGGCGACAAAACTGTGGAATGAAGTCACAAAGCTATTCAAGGCAGGGATGCCTCTGCGGAAACATCGTCAACACTTCAGAGTATATGGGAACTGTTTTACTGCCATAGCAGCTGTCGACTGGCTACACGAACTGCTCAGGTACAATAGTAATTTTGGACCAGATGTCACCAGACAACAGACTATCCAACTGCTGAAGAAGTTCCTCAAAAATCATGTGATCGAGGATGTGAAGGGCAGATGGGGTTCAGAAGATTTGGAAGACAACAGCCATCTCTACAGGTTTGCTTCAACATCTCCTTTGAAACCAATTCCCTATCGCCCACCTGTGTCAGGGCCTGCATCAGTAAAGAAGAGTTTCTCAATGAAAGAAAAGGAAGGCTTCTTCAAATGTAGGACTTCCAAGAAACCTGGCAAGGAGACTACAGAAAATGTGGATCCATCAAAACAAGATATGGAGACTGAGCCTGTGATTGAAGTGGTTCAGGCCAGAGCACTAACAGAGGAAGATATTCAGGATGTTTGGAGAGGCATCACTCTCACACACCTTCAGAAAACATTGGGATTGACTGCGCTTGAGGATGTTTTGGATCCAAGACACATCAATTCTCAAAACATTGTGTACAACATGACCAATGTGAACAAGCATGGGGTTGTTACACTTGAGGACAAGACTGATGACCTCCCACACTGGGTCTTGTCTGCAATGAAATGTCTTGCAAACTGGCCGAAGTATGATTCCAACCAGCCATCCTATCCTGGGTTTGAGAGGGATGTGTTTAAAACCGTCTCTGACTACTTCTACAGCCTCCCTCAGCCACTTCTTACATTTGAGTACTATGAGTTGTTTGTCAACATCTTGGTTTTATGTGGCTACATTGTGGCTCCTAAAACTCAAAGAGGAAAGCGAAAAAACCAAGAGGATCCCAGCTACCCCCAGCCTGCAAAAAACCCTCACATGAAAGGTGCTGTTAACCTGTTCAAATCAACGGAATGTCTGCTGTTGAGCTTAATTCGGAAAGAGGCTTTTGAAGAGGGCGACTCACCAATGAGAGAGGTGTTCAGTTCAAAGGCCCAGTCCACGTTTGCAGCTCTGAAGACGGGCTGTGCCGGGAGGGTCCCCCAGATGGGTCTGACAGGCCGAAGGGCCAGTTCCGGGGATGTCCTGGGAGGCAACTCTCCGAGTCTTGTACGGTCAGAGAGCAGTGGAGCCTCATCAGTTAGGCTCAAAAGACCCAGTAGTTGCTCCCTGGAGAGAATCCTGGATGAATCAGCTAAGTCTGACTCATGCACCCAACACAAGTTGTTCCAGTCTACAGAGAGTCTGGTGTCCTGCAAAAGTAACAGTGGCAGCAAGTACAGCACCCCACCTCAGAATAAAActgactctctgtctgttttAGACAACTACCCTTACTCTGAACCCCAAGTCTTTGTCACCATGGCAACTCCCAGTTGCAACACCAGTTCAGGTATGATGTCTGTAGACGGTAGCACTCACAGCTCCAAAAGCGAGGGTGCCAGAAGCGGCATCTCGCTACCAATGGACAACCTCTCAGTCAGTCAGAAGCCCAAGCGCCCTAGGAGCATTGGTACCGGTTTGGATATAGCTGAGCACAGAGGGATGTCTGCCAGCTGTTTCAGTATTAACGCCCCTGTAGCAGAGATCACCGTGAAGCCAGACTCCTCCTCCACTGTTGGCCTGAGGGGTCCCAGTCTGCTTAACCTGAGGGCCAGCAGCATGGACCTCCGAGACCTCAGAGCTGGGCCTTCTGTTAGCAGGCGCTGTCAGAGCTCTCTGGACCTGTCCAGGCCAACCTTTGCTCTGCCCTCTGTGTTCACTTATGCACGCCGTCTGAGTTCCGAGCAAAGTCTCCTCCAGCCTCAGTTGGAGCGGGTGGCCATTGAGGCTCTGCAGCTCTGCACCCTGTTGCTGCCCCCTGCCAGCCGGAGGAAGCTCCAGCTGCTGATGAGAATGATCTCCCGGATGAGTCAGAATGTGGACATGCCTCGGCTCCATGACGCCATAGGAACACGCACATTGATGGTCCATACGTTCTCCCGCTGTGTGCTGGGCTGTGAGGAAGAGGTGGACCTGGATGAGCTTCTGGCCACCAGACTGGTCTCCTTCCTCATGGATCACCACCAGGAGATACTCCAGGTGCCAGTCTATCTGCAGAACGCTGTCCGAGACCACCTGGTATACCTCAGAAAAGTACAGataACCTACCCAGGTAGTGGTGGTGTGGAGGCCCCCATGCCCATCTACTCCTTCTGCAGACAGATCAGTACCGAGGAGTTTGAGGAGCAGAAGCTGAGTGTGTCCCAGGCTGCCATCGCTGACCTGCTGGAGAGCCTGGTCAAAGACAAGAACATGTCTGTAAAGGATAAGAAGAAGAAGCTCAAGCAGTTTCAGAGGCAGTATACAGACATTTACGCTCGCCGATTTCCAACGACTGCGAGCGAGGCGCAGCTTTTTGAAGATAAACCAAAGATCAAACCTCCAATGCTGATAAGTATGAAAAAACCAAAAGCTTTTGGAATTAGAAATTGAAGGTACAATTGGGATGCAACTGTTTGTGTGGAATATTTTTGTTGCTTGAAACTAGACCTGGCAGCTAAATGTAGGAAGGTGGGAGGAAACTACTGTGGGGACCACCACAATTTAGACTGCAACTATAACATTTCTCTTTAGGGTTGAATTATGCATGTTTTATGTTAAgtcatgtttttgtgtgtgtaattTCTAAATACTGCAGTATGTATCTTTAGTGCACCAAATAATTTATTCGGGATTGATGATGCCCTCGTATGGGAGTATAAGCTGTAAGCAAATGACAATTTGGGAGTCGattctttattttctttattttgaagTTGATCCAGATTTATACACTCCGATTGACATCAATGTACGGAATTTAAACCTTCAGGGATTAGTTTTATTGTTAAGATTAATAATAAAATTAGTCTacctagtttttttttttcataggGTTGTATGAAATGCTTATAATTGAACTTTGTTCatgtttttctgtttgttttgtcactTCTCTGTATTTTTATTCCATTAACATTCTCAAAGTTGAGCTCAAACTACTTTATTGTATATTTTTGGTGTGggatgtttt
>XM_021604013.2
GCCTCCAGAAGAAAGCTCGTAATTTTAAACAGTGTGGAATGCCACTGGTCGCTGCATCGACAATGTGGCACCGATAACCAACAAACTACAATAATTTGGGTTGTTTGCACGTTGATTCTAGCGTCAATATGATGAGTTCTCATATTGTCACTCCTGGGCCTTATAGGGCGACAAAACTGTGGAATGAAGTCACAAAGCTATTCAAGGCAGGGATGCCTCTGCGGAAACATCGTCAACACTTCAGAGTATATGGGAACTGTTTTACTGCCATAGCAGCTGTCGACTGGCTACACGAACTGCTCAGGTACAATAGTAATTTTGGACCAGATGTCACCAGACAACAGACTATCCAACTGCTGAAGAAGTTCCTCAAAAATCATGTGATCGAGGATGTGAAGGGCAGATGGGGTTCAGAAGATTTGGAAGACAACAGCCATCTCTACAGGTTTGCTTCAACATCTCCTTTGAAACCAATTCCCTATCGCCCACCTGTGTCAGGGCCTGCATCAGTAAAGAAGAGTTTCTCAATGAAAGAAAAGGAAGGCTTCTTCAAATGTAGGACTTCCAAGAAACCTGGCAAGGAGACTACAGAAAATGTGGATCCATCAAAACAAGATATGGAGACTGAGCCTGTGATTGAAGTGGTTCAGGCCAGAGCACTAACAGAGGAAGATATTCAGGATGTTTGGAGAGGCATCACTCTCACACACCTTCAGAAAACATTGGGATTGACTGCGCTTGAGGATGTTTTGGATCCAAGACACATCAATTCTCAAAACATTGTGTACAACATGACCAATGTGAACAAGCATGGGGTTGTTACACTTGAGGACAAGACTGATGACCTCCCACACTGGGTCTTGTCTGCAATGAAATGTCTTGCAAACTGGCCGAAGTATGATTCCAACCAGCCATCCTATCCTGGGTTTGAGAGGGATGTGTTTAAAACCGTCTCTGACTACTTCTACAGCCTCCCTCAGCCACTTCTTACATTTGAGTACTATGAGTTGTTTGTCAACATCTTGGGTCTCCTCCAGCCTCAGTTGGAGCGGGTGGCCATTGAGGCTCTGCAGCTCTGCACCCTGTTGCTGCCCCCTGCCAGCCGGAGGAAGCTCCAGCTGCTGATGAGAATGATCTCCCGGATGAGTCAGAATGTGGACATGCCTCGGCTCCATGACGCCATAGGAACACGCACATTGATGGTCCATACGTTCTCCCGCTGTGTGCTGGGCTGTGAGGAAGAGGTGGACCTGGATGAGCTTCTGGCCACCAGACTGGTCTCCTTCCTCATGGATCACCACCAGGAGATACTCCAGGTGCCAGTCTATCTGCAGAACGCTGTCCGAGACCACCTGGTATACCTCAGAAAAGTACAGataACCTACCCAGGTAGTGGTGGTGTGGAGGCCCCCATGCCCATCTACTCCTTCTGCAGACAGATCAGTACCGAGGAGTTTGAGGAGCAGAAGCTGAGTGTGTCCCAGGCTGCCATCGCTGACCTGCTGGAGAGCCTGGTCAAAGACAAGAACATGTCTGTAAAGGATAAGAAGAAGAAGCTCAAGCAGTTTCAGAGGCAGTATACAGACATTTACGCTCGCCGATTTCCAACGACTGCGAGCGAGGCGCAGCTTTTTGAAGATAAACCAAAGATCAAACCTCCAATGCTGATAAGTATGAAAAAACCAAAAGCTTTTGGAATTAGAAATTGAAGGTACAATTGGGATGCAACTGTTTGTGTGGAATATTTTTGTTGCTTGAAACTAGACCTGGCAGCTAAATGTAGGAAGGTGGGAGGAAACTACTGTGGGGACCACCACAATTTAGACTGCAACTATAACATTTCTCTTTAGGGTTGAATTATGCATGTTTTATGTTAAgtcatgtttttgtgtgtgtaattTCTAAATACTGCAGTATGTATCTTTAGTGCACCAAATAATTTATTCGGGATTGATGATGCCCTCGTATGGGAGTATAAGCTGTAAGCAAATGACAATTTGGGAGTCGattctttattttctttattttgaagTTGATCCAGATTTATACACTCCGATTGACATCAATGTACGGAATTTAAACCTTCAGGGATTAGTTTTATTGTTAAGATTAATAATAAAATTAGTCTacctagtttttttttttcataggGTTGTATGAAATGCTTATAATTGAACTTTGTTCatgtttttctgtttgttttgtcactTCTCTGTATTTTTATTCCATTAACATTCTCAAAGTTGAGCTCAAACTACTTTATTGTATATTTTTGGTGTGggatgtttt

Function


NR:

description
DEP domain-containing protein 1A-like isoform X4

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021604012.2 False 3299 mRNA 0.47 12 67987179 67995354
XM_021604013.2 True 2289 mRNA 0.44 11 67987181 67995354

Neighbor


gene id symbol gene type direction distance location
lrrc40 lrrc40 coding upstream 176857 67802829 ~ 67810322 (+)
LOC110524410 NA coding upstream 337652 67517412 ~ 67649527 (+)
sox2 sox2 coding upstream 362824 67622271 ~ 67624355 (+)
fxr1 fxr1 coding upstream 475774 67491153 ~ 67511405 (+)
LOC110524407 LOC106613876 coding upstream 524049 67458540 ~ 67464323 (+)
LOC110524415 LOC106613887 coding downstream 1000 67996354 ~ 68000277 (+)
LOC110524419 LOC106613886 coding downstream 14837 68010191 ~ 68052897 (+)
LOC110524422 gsh0 coding downstream 198398 68193752 ~ 68200853 (+)
LOC110524423 LOC106613476 coding downstream 216870 68212224 ~ 68214236 (+)
elavl4 LOC106613894 coding downstream 652462 68647816 ~ 68716531 (+)
G430297 NA non-coding upstream 545169 67441733 ~ 67442010 (+)
G430285 NA non-coding upstream 551006 67435867 ~ 67436173 (+)
G430282 NA non-coding upstream 558292 67428684 ~ 67428887 (+)
G430749 LOC106613888 non-coding downstream 63199 68058553 ~ 68058967 (+)
G430775 NA non-coding downstream 72910 68068264 ~ 68068617 (+)
G430787 NA non-coding downstream 93790 68089144 ~ 68089356 (+)
G430798 NA non-coding downstream 112747 68108101 ~ 68108398 (+)
G429156 NA other upstream 939015 66981949 ~ 67048164 (+)
G428696 NA other upstream 1844574 66142079 ~ 66142605 (+)
G427747 NA other upstream 2465799 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 2958477 65024444 ~ 65028828 (+)
G430796 LOC106613888 other downstream 107825 68103179 ~ 68103534 (+)
G434653 NA other downstream 2964256 70959610 ~ 70959932 (+)
G434792 LOC106613943 other downstream 3223435 71218789 ~ 71223578 (+)
G434829 NA other downstream 3303261 71298615 ~ 71298900 (+)

Expression



Co-expression Network