LOC110524415 (LOC106613887)


Basic Information

Item Value
gene id LOC110524415
gene name LOC106613887
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 67996354 ~ 68000277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604014.2
AGACCTCTGATTGGTTTGGGGGGAGGTTCTCAAACTCCCGGCGCTCTGCCTGGGAATCTAACAGTGTCTATAAAGGCTGCTGATCACTCCACAGTTCAGACTGATTTCCTACACACTGTCAATAGGAAAATGGTTAGTCGAATTGAGCATCCGGCTGGTGGCTACAAGAAAATCTTTGAGACATGTGAAGAGTTGAATGAGCCTATTCCTGCTGTGGTTGTAGGTGTGATCCCAGAATGGCTGAGCGGCAGTCTGTTGCGTCTTGGACCTGGCCTGTTTGAGGTGGGGGCGGAACCTTTCTACCACCTCTTTGATGGCCAGGCCCTCATGCACAAGTTTGACCTAAAGAACGGCCATGTGACATACTATCGGAAATTTGTCAAAACAGATGCCTATGTGCGAGCCATGACAGAGAAAAGAGTGGTCATCACGGAGTTTGGAACAGCAGCCTACCCAGATCCTTGCAAAAATATATTCTCAAGGTTTTTCACCTACTTCAAAGGGATTGAGGTGACAGATAATTGCTTAGTGAACGTGTACCCTGTTGGTGAGGATTTCTATGCCTGCACAGAAACCAACTACATCACCAAAGTCGACCCAGACACACTGGAGACTCTGAAAAGGGTGGACCTGTGTGACTACCTCTCGGTCAATGGAGTGACAGCTCATCCACACATTGAAAGTGATGGAACGGTGTACAACATTGGGAACTGTTTTGGGAAGaatatgtcactggcctacaacaTTGTCAAAATTCCTCCCACACCGAAAGACAAGTCCGATCCCATTGCAAAGTCCAAGGTTCTTGTGCAGCTCCCCAGCAGTGAGAGATTCAAGCCCTCCTATGTTCACAGCTTTGGAATGACAGAAAACTACTTTGTCTTCGTTGAGACTCCAGTGAAGATAAACCTTCTAAAATTCTTGACCGCTTGGAGCATCTGGGGCACAAATTACATGGATTGCTTTGAGTCAAACGAAACCATGGGCACATGGTTCCATCTGGCTACAAAGGACCCAGCTGAATACATAGAGCATAAATTCAGGACTTCTGCCTTCAATCTCTTCCATCATATCAACAGCTATGAGGACGATGGCTTCATCGTTGTTGACCTGTGTACTTGGAAAGGTCATGAGTTTGTCTACAACTACCTATATCTGGCCAACCTGCGGGAGAACTGGGAGGAAGTGAAGAAAGCTGCTATGAGGGCACCTCAGCCAGAGGTCCGGCGATACGTTCTACCCATGGACGTCCACAAGGAGGAACAGGGGAAGAATCTGATATCCCTTCCGTACACCACAGCCACTGCAGTGATGCGCAGCGATGGAACCATCTGGCTGGAGCCTGAGGTTCTGTTTTCTGGACCACGACAAGCTTTCGAGTTCCCTCAGATCAACTACAGTAAATTCTCTGGGAAGAACTACAGCTATGCCTATGGACTGGGCCTGAACCACTTCATCCCTGACAGGATCTGCAAACTGAACGTGAAGACTAAGGATACGTGGGTGTGGCAGGAGCCAGACTCTTACCCCTCAGAGCCCATCTTTGTGCAGACCCCAGATTCTGTGGAGGAAGATGACGGGGTGTTGTTGAGCATCGTGGTGAACCCTGGAGCAGACCAGAGGCCAGGGTATCTCCTCATCCTCAATGCCAGAGACCTGACAGAGATCGCACGGGCTGAGGTGGAGGTCATCATCCCTGTCACCTTCCATGGAATGTACAAGCCTTAGGACTACATTCTCAAACACATCTACAATACCACTCCACAGGAGAAAGGGACAATAATAATACTATAACCTTTGTTGggaatgt

Function

NR:

description
retinal Mueller cells isomerohydrolase-like

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0050251 retinol isomerase activity molecular_function

KEGG:

id description
K11158 RPE65; retinoid isomerohydrolase / lutein isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604014.2 True 1810 mRNA 0.48 14 67996354 68000277

Neighbor

gene id symbol gene type direction distance location
depdc1a LOC106613883 coding upstream 1000 67987179 ~ 67995354 (+)
lrrc40 lrrc40 coding upstream 186032 67802829 ~ 67810322 (+)
LOC110524410 NA coding upstream 346827 67517412 ~ 67649527 (+)
sox2 sox2 coding upstream 371999 67622271 ~ 67624355 (+)
fxr1 fxr1 coding upstream 484949 67491153 ~ 67511405 (+)
LOC110524419 LOC106613886 coding downstream 9914 68010191 ~ 68052897 (+)
LOC110524422 gsh0 coding downstream 193475 68193752 ~ 68200853 (+)
LOC110524423 LOC106613476 coding downstream 211947 68212224 ~ 68214236 (+)
elavl4 LOC106613894 coding downstream 647539 68647816 ~ 68716531 (+)
LOC110524431 LOC106613897 coding downstream 910657 68910934 ~ 68936736 (+)
LOC110524407 LOC106613876 non-coding upstream 532211 67458540 ~ 67464323 (+)
G430297 NA non-coding upstream 554344 67441733 ~ 67442010 (+)
G430285 NA non-coding upstream 560181 67435867 ~ 67436173 (+)
G430282 NA non-coding upstream 567467 67428684 ~ 67428887 (+)
G430749 LOC106613888 non-coding downstream 58276 68058553 ~ 68058967 (+)
G430775 NA non-coding downstream 67987 68068264 ~ 68068617 (+)
G430787 NA non-coding downstream 88867 68089144 ~ 68089356 (+)
G430798 NA non-coding downstream 107824 68108101 ~ 68108398 (+)
G429156 NA other upstream 948190 66981949 ~ 67048164 (+)
G428696 NA other upstream 1853749 66142079 ~ 66142605 (+)
G427747 NA other upstream 2474974 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 2967652 65024444 ~ 65028828 (+)
G430796 LOC106613888 other downstream 102902 68103179 ~ 68103534 (+)
G434653 NA other downstream 2959333 70959610 ~ 70959932 (+)
G434792 LOC106613943 other downstream 3218512 71218789 ~ 71223578 (+)
G434829 NA other downstream 3298338 71298615 ~ 71298900 (+)

Expression


Co-expression Network