LOC110524422 (gsh0)


Basic Information

Item Value
gene id LOC110524422
gene name gsh0
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 68193752 ~ 68200853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604025.2
TTTGCACACAACGCACAGTTACAAGGTGGGCGTGCTCATAGCGCTAGTTTCCACCAGCAAAATAAACTACCGGTACATATGCAATTCACAGAGGTACTGTTTTTGAAACGCGGTGAGTCCTGTCGCTAACTGCAGAAATAAATAACTGGATAAGTTGCTGGATAGCTTAAAAGGACGTTTCACTACTATATATTTACTGACAACCAAGGACACCACATGGACAATCACACCACCAGTGCTAAAGTGCTTCTCAACCATGCTACGACATTGAATCTGCACACGGGAAATTTAGTAAACCGTAGCCGTCTCAAGAAAAAATGTCCGTCTTCACCTAGTGAAGAGATTCAAGACTGTGTTCGAGCTACACTTAGTGAGTGGTTTGCCACGATACCACCACCAACTTCACCAACGGACTTACCAGACACAATTGACTGCTCCATCCCTCAAGCTACAGAAGTAATCACACCcgaggagagggaggagctgAAGGTTTCAGTCAAACTATTTATTTGCGAGGCAGACCTCTCTTCAATCAAAGATGCAGTAGATAAGGCTTGCCAGGCCCTGGCTGTTTCCCAGCTGGACTCAGTGATCATTGCGCCCCCTGCTCTGCCTGAGGAAGTGAGCCAGACCCTGGACAACCTGCAGCCTGCCTGGAGTGAACTGGAGGGTCTGGTGCAAAGCCACAAGATCGCTACCATCGGCACCTCCGACCTGGACAAGGAGCTCCTGGAGCAGCTCTACAACTGGGCCCAGGTGAAACCCAGTAGTAACCAGGTGAATCTGGCCTCCTGCTGTGTGATGCCCCCTGACCTGACTGCTTTTGCAAAGGAGTTTGACATTCAGCTACTGACTCATAATGACCCAAAAGAACTGATTACTGCTGCCAGCTTCCAGGAGGCAGTGCAGgagagcactcaggacctgaaGGTGGCAGACTGGAGGTTGGAGTGGGTTTTGCGTTACTCCATCATAGTCAAAAGCAGGGGGATCATCAAAGCAAAAGGCTACCTTGTTCACGCAAAGAGAAGCAGCCTGCAGCATGTCCTCTGAAAACCAGTTGTTCAGATGTTATTCATGACCACTGCATTCATAGTAATGAAACCACTTACCCTTCTGCATTGCAGTAGAAGCTGTGTTTTAAAGACTGATGGGTAGCTAAACTTTTATCCAACATGGTTTCAAAGCGGAtttttctccttttctccccgCATCTACTTTATTTTGCTGTGTCAAggattatggggtattatgaaaAAAGATGCATTGGTACCACAGAATTTGTATTTTAGTACAATGACAGAATTATTCAAAAGCAGTTTAAATGGGAAACACAGCCTCTAACCCACTATGGAAATGTCCTATGatatttttacattgtaaatTTGGATCTGTTGTTATAGCTTGAGTCATATGTAAAGTCCTAGTGCTCTCTGATGTGTATGAGCAGCTTCTACTGTATAATACTTGCACCCTCTATTGGCAATGGGGGGGATTAAGGCATAATTCAAATTGACATTTATGGTTAGTTCAGAAACTATTTTTGATTGTgtacacattttattttaaacaAATCTAGTGATACTTTATGGATGTTAGTAttgtcatgtcaaacattttAATATATGTTTAAAGCCCTGTACTTACTGAGAATATACTaggacagtggttcccaaactgtggggtgTGCCTCCTAGGGTTTAAATTAGTAGGCTCAACACCTTTATTGTGTACATAATAGCACTGAAAAATTCCAGATTGGCATGGAAAATGAATTACAAGCTCTGAAGTATCTGGCCTGATAATGCCTTATCATGGCTTTTCTTCCAGACATTGTCCAAAAAGTTTGATTTCTCTCTTGTACTGTAATTAAAATGTtgctattttctgtatatcatGTCCTTGAATTGTGTTTATTAAACGATGAAAGACTAA
>XM_021604026.2
TACAAGGTGGGCGTGCTCATAGCGCTAGTTTCCACCAGCAAAATAAACTACCGGTACATATGCAATTCACAGAGGTACTGTTTTTGAAACGCGGTGAGTCCTGTCGCTAACTGCAGAAATAAATAACTGGATAAGTTGCTGGATAGCTTAAAAGGACGTTTCACTACTATATATTTACTGACAACCAAGGACACCACATGGACAATCACACCACCAGTGCTAAAGTGCTTCTCAACCATGCTACGACATTGAATCTGCACACGGGAAATTTAGTAAACCGTAGCCGTCTCAAGAAAAAATGTCCGTCTTCACCTAGTGAAGAGATTCAAGACTGTGTTCGAGCTACACTTAGTGAGTGGTTTGCCACGATACCACCACCAACTTCACCAACGGTGGAGGAATTCTGTGAGAGCTTAATGTTATGCCTTAAAACCTTTGCCCCCCCCCAACCAACGAGGAAGTCTGCTGTAGGGTTGCCAGCCCGCTCTTCATTTCCACTCAGTTCGACTCGCCATAAGTTCGGGGTCTGAACTGTGCATTACGTACACAAAGCCAAAGCTTATTGGAGCATCCCTGCAATGAAATCCCACAAGATTGTAAAACAGAAATTCTGGGACTTACCAGACACAATTGACTGCTCCATCCCTCAAGCTACAGAAGTAATCACACCcgaggagagggaggagctgAAGGTTTCAGTCAAACTATTTATTTGCGAGGCAGACCTCTCTTCAATCAAAGATGCAGTAGATAAGGCTTGCCAGGCCCTGGCTGTTTCCCAGCTGGACTCAGTGATCATTGCGCCCCCTGCTCTGCCTGAGGAAGTGAGCCAGACCCTGGACAACCTGCAGCCTGCCTGGAGTGAACTGGAGGGTCTGGTGCAAAGCCACAAGATCGCTACCATCGGCACCTCCGACCTGGACAAGGAGCTCCTGGAGCAGCTCTACAACTGGGCCCAGGTGAAACCCAGTAGTAACCAGGTGAATCTGGCCTCCTGCTGTGTGATGCCCCCTGACCTGACTGCTTTTGCAAAGGAGTTTGACATTCAGCTACTGACTCATAATGACCCAAAAGAACTGATTACTGCTGCCAGCTTCCAGGAGGCAGTGCAGgagagcactcaggacctgaaGGTGGCAGACTGGAGGTTGGAGTGGGTTTTGCGTTACTCCATCATAGTCAAAAGCAGGGGGATCATCAAAGCAAAAGGCTACCTTGTTCACGCAAAGAGAAGCAGCCTGCAGCATGTCCTCTGAAAACCAGTTGTTCAGATGTTATTCATGACCACTGCATTCATAGTAATGAAACCACTTACCCTTCTGCATTGCAGTAGAAGCTGTGTTTTAAAGACTGATGGGTAGCTAAACTTTTATCCAACATGGTTTCAAAGCGGAtttttctccttttctccccgCATCTACTTTATTTTGCTGTGTCAAggattatggggtattatgaaaAAAGATGCATTGGTACCACAGAATTTGTATTTTAGTACAATGACAGAATTATTCAAAAGCAGTTTAAATGGGAAACACAGCCTCTAACCCACTATGGAAATGTCCTATGatatttttacattgtaaatTTGGATCTGTTGTTATAGCTTGAGTCATATGTAAAGTCCTAGTGCTCTCTGATGTGTATGAGCAGCTTCTACTGTATAATACTTGCACCCTCTATTGGCAATGGGGGGGATTAAGGCATAATTCAAATTGACATTTATGGTTAGTTCAGAAACTATTTTTGATTGTgtacacattttattttaaacaAATCTAGTGATACTTTATGGATGTTAGTAttgtcatgtcaaacattttAATATATGTTTAAAGCCCTGTACTTACTGAGAATATACTaggacagtggttcccaaactgtggggtgTGCCTCCTAGGGTTTAAATTAGTAGGCTCAACACCTTTATTGTGTACATAATAGCACTGAAAAATTCCAGATTGGCATGGAAAATGAATTACAAGCTCTGAAGTATCTGGCCTGATAATGCCTTATCATGGCTTTTCTTCCAGACATTGTCCAAAAAGTTTGATTTCTCTCTTGTACTGTAATTAAAATGTtgctattttctgtatatcatGTCCTTGAATTGTGTTTATTAAACGATGAAAGACTAA
>XM_021604027.2
TACTGTTTTTGAAACGCGATTCAAGACTGTGTTCGAGCTACACTTAGTGAGTGGTTTGCCACGATACCACCACCAACTTCACCAACGGTGGAGGAATTCTGTGAGAGCTTAATGTTATGCCTTAAAACCTTTGCCCCCCCCCAACCAACGAGGAAGTCTGCTGTAGGGTTGCCAGCCCGCTCTTCATTTCCACTCAGTTCGACTCGCCATAAGTTCGGGGTCTGAACTGTGCATTACGTACACAAAGCCAAAGCTTATTGGAGCATCCCTGCAATGAAATCCCACAAGATTGTAAAACAGAAATTCTGGGACTTACCAGACACAATTGACTGCTCCATCCCTCAAGCTACAGAAGTAATCACACCcgaggagagggaggagctgAAGGTTTCAGTCAAACTATTTATTTGCGAGGCAGACCTCTCTTCAATCAAAGATGCAGTAGATAAGGCTTGCCAGGCCCTGGCTGTTTCCCAGCTGGACTCAGTGATCATTGCGCCCCCTGCTCTGCCTGAGGAAGTGAGCCAGACCCTGGACAACCTGCAGCCTGCCTGGAGTGAACTGGAGGGTCTGGTGCAAAGCCACAAGATCGCTACCATCGGCACCTCCGACCTGGACAAGGAGCTCCTGGAGCAGCTCTACAACTGGGCCCAGGTGAAACCCAGTAGTAACCAGGTGAATCTGGCCTCCTGCTGTGTGATGCCCCCTGACCTGACTGCTTTTGCAAAGGAGTTTGACATTCAGCTACTGACTCATAATGACCCAAAAGAACTGATTACTGCTGCCAGCTTCCAGGAGGCAGTGCAGgagagcactcaggacctgaaGGTGGCAGACTGGAGGTTGGAGTGGGTTTTGCGTTACTCCATCATAGTCAAAAGCAGGGGGATCATCAAAGCAAAAGGCTACCTTGTTCACGCAAAGAGAAGCAGCCTGCAGCATGTCCTCTGAAAACCAGTTGTTCAGATGTTATTCATGACCACTGCATTCATAGTAATGAAACCACTTACCCTTCTGCATTGCAGTAGAAGCTGTGTTTTAAAGACTGATGGGTAGCTAAACTTTTATCCAACATGGTTTCAAAGCGGAtttttctccttttctccccgCATCTACTTTATTTTGCTGTGTCAAggattatggggtattatgaaaAAAGATGCATTGGTACCACAGAATTTGTATTTTAGTACAATGACAGAATTATTCAAAAGCAGTTTAAATGGGAAACACAGCCTCTAACCCACTATGGAAATGTCCTATGatatttttacattgtaaatTTGGATCTGTTGTTATAGCTTGAGTCATATGTAAAGTCCTAGTGCTCTCTGATGTGTATGAGCAGCTTCTACTGTATAATACTTGCACCCTCTATTGGCAATGGGGGGGATTAAGGCATAATTCAAATTGACATTTATGGTTAGTTCAGAAACTATTTTTGATTGTgtacacattttattttaaacaAATCTAGTGATACTTTATGGATGTTAGTAttgtcatgtcaaacattttAATATATGTTTAAAGCCCTGTACTTACTGAGAATATACTaggacagtggttcccaaactgtggggtgTGCCTCCTAGGGTTTAAATTAGTAGGCTCAACACCTTTATTGTGTACATAATAGCACTGAAAAATTCCAGATTGGCATGGAAAATGAATTACAAGCTCTGAAGTATCTGGCCTGATAATGCCTTATCATGGCTTTTCTTCCAGACATTGTCCAAAAAGTTTGATTTCTCTCTTGTACTGTAATTAAAATGTtgctattttctgtatatcatGTCCTTGAATTGTGTTTATTAAACGATGAAAGACTAA

Function

NR:

description
glutamate--cysteine ligase regulatory subunit-like isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016874 ligase activity molecular_function

KEGG:

id description
K11205 GCLM; glutamate--cysteine ligase regulatory subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604025.2 False 1935 mRNA 0.43 7 68193752 68200853
XM_021604026.2 False 2138 mRNA 0.43 8 68193771 68200853
XM_021604027.2 True 1833 mRNA 0.43 8 68193846 68200853

Neighbor

gene id symbol gene type direction distance location
LOC110524419 LOC106613886 coding upstream 140855 68010191 ~ 68052897 (+)
LOC110524415 LOC106613887 coding upstream 193475 67996354 ~ 68000277 (+)
depdc1a LOC106613883 coding upstream 198398 67987179 ~ 67995354 (+)
lrrc40 lrrc40 coding upstream 383430 67802829 ~ 67810322 (+)
LOC110524410 NA coding upstream 544225 67517412 ~ 67649527 (+)
LOC110524423 LOC106613476 coding downstream 11371 68212224 ~ 68214236 (+)
elavl4 LOC106613894 coding downstream 446963 68647816 ~ 68716531 (+)
LOC110524431 LOC106613897 coding downstream 710081 68910934 ~ 68936736 (+)
LOC118964640 NA coding downstream 995529 69196382 ~ 69222310 (+)
LOC110524443 cep350 coding downstream 1265418 69466271 ~ 69505008 (+)
G430863 NA non-coding upstream 3026 68190112 ~ 68190726 (+)
G430860 NA non-coding upstream 3643 68185680 ~ 68190109 (+)
G430837 NA non-coding upstream 36322 68157227 ~ 68157430 (+)
G430828 NA non-coding upstream 49133 68144163 ~ 68144619 (+)
G430826 NA non-coding upstream 51624 68141846 ~ 68142128 (+)
G430948 NA non-coding downstream 123971 68324824 ~ 68396956 (+)
G431028 NA non-coding downstream 239771 68440624 ~ 68520768 (+)
G431188 NA non-coding downstream 543910 68744763 ~ 68752767 (+)
G431309 NA non-coding downstream 624798 68825651 ~ 68825945 (+)
G431311 NA non-coding downstream 628114 68828967 ~ 68829171 (+)
G430796 LOC106613888 other upstream 90218 68103179 ~ 68103534 (+)
LOC110524407 LOC106613876 other upstream 729429 67458540 ~ 67464323 (+)
G429156 NA other upstream 1145588 66981949 ~ 67048164 (+)
G428696 NA other upstream 2051147 66142079 ~ 66142605 (+)
G427747 NA other upstream 2672372 65453856 ~ 65521380 (+)
G434653 NA other downstream 2758757 70959610 ~ 70959932 (+)
G434792 LOC106613943 other downstream 3017936 71218789 ~ 71223578 (+)
G434829 NA other downstream 3097762 71298615 ~ 71298900 (+)
ralgps2 LOC106613957 other downstream 3475018 71552653 ~ 71687963 (+)

Expression


Co-expression Network