LOC110524423 (LOC106613476)


Basic Information

Item Value
gene id LOC110524423
gene name LOC106613476
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 68212224 ~ 68214236 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604028.2
ATGGATGTGAGCAGCACAATAGTAACTGAGAATGAAAGGGCTGATCAAGATGAAGCCCCTCACACCACAGAGCCCATTTTGGTGACCTCTATCCAGAACCTGAAGGTCAGTGTATCTGACGCTGACAAGCTAGAGGAAAAGGAGGGGGGCACTGCTGGTGACACGGAGGCCATTGAAGAGCAAGATCAGGAAGAATGTGTTGATCAGGAGGGAGACTATGATAAATATGCACAAGTCCTCTTCACAAGCAGAAATCCACAATTGAAAGAGTTGTCCAGCCGCATTGACCCGGGCCTGAGATTGAAGGAGCTTGGGGGATTATACATCAATTTTGATGGCAGCAAATCAAAGACTGTCTCTAACTCCCTGAAAAAACTAAAGGAACAGAAGAGCCAAGATGAGTTGATGAAGAAAAGTGTTATTGGCCCAGAGCTTGAGAAGAAAGATGCTGTGCCTCCATACAGGGAGTCCAAACAGGCTGTGAAACTGAAGCGCAAAGAGAGCGACTTGACAACTGGAGCCAGGTGGTTTAATATGCGGGCTCCTGAAATGACAGAGTAACTAAAGGGCGACCTCAAAGCACTGAAAATGCATGGAGCAGTGGACCCCAAGTGGTTTTACAAGAAGAACGACATAGATGGATTCCCCAAGTATTTCCAGGTCATAGTAGAAAGCCCTGTGGACTTCTATCATTCCCGTGTCCTGAAGAAAGACCGGAAGAGAACCATGGTGGCGGAGTTGCTTGCTGATGCAGAGTTCAGACAAAACGAGAAGAAATACCAACAGATCATGGCAGAAAAAGCAGCCATTGGTGCTGGCAAGAAGAATAATAAGTTCAGAAAGTGAGTGACTGAATTGAGACCATTATATGTTAATGCCTGAATGAAACCTGTTAAACACACAGTACCATTTTTAAAGTGTCTGAGTGTCGATGCATctgttaaatgttttattaacatGAACTATGTATCAACAGATTTTCTGACTGTAATTCAAAGGTTTTTTATCTTTATCACATTTTTGGGAAACAataaagtaccttactgtga
>TU488020
GTTGGAGACTAGACAATGCTTCCTCTCCCGGGTAATTATTTGAGACAATCTGTTATAGGAAAGAGTTGTCCAGCCGCATTGACCCGGGCCTGAGATTGAAGGAGCTTGGGGGATTATACATCAATTTTGATGGCAGCAAATCAAAGACTGTCTCTAACTCCCTGAAAAAACTAAAGGAACAGAAGAGCCAAGATGAGTTGATGAAGAAAAGTGTTATTGGCCCAGAGCTTGAGAAGAAAGATGCTGTGCCTCCATACAGGGAGTCCAAACAGGCTGTGAAACTGAAGCGCAAAGTGAATACAAGTCCATGTAACCTTGTTTATTAATTTAGAAAAGGAAGTAGTGTGATACAAGGAGAAGTTATATTTTTACTACATTTAGCAAGCAGGCATGTTTCCTCCTTGGCTTGCCATGCTCAGGAGAGCGACTTGACAACTGGAGCCAGGTGGTTTAATATGCGGGCTCCTGAAATGACAAGAGTAACTAAAGGGCGACCTCAAAGCACTGAAAATGCATGGAGCAGTGGACCCCAAGTGGTTTTACAAGAAGAACGACATAGATGGATTCCCCAAGTATTTCCAGTAGAAAGCCCTGTGGACTTCTATCATTCCCGTGTCCTGAAGAAAGACCGGAAGAGAACCATGGTGGCGGAGTTGCTTGCTGATGCAGAGTTCAGACAAAACGAGAAGAAATACCAACAGATCATGGCAGAAAAAGCAGCCATTGGTGCTGGCAAGAAGAATAATAAGTTCAGAAAGTGAGTGACTGAATTGAGACCATTATATGTTAATGCCTGAATGAAACCTGTTAAACACACAGTACCATTTTTAAA

Function

NR:

description
LOW QUALITY PROTEIN: deoxynucleotidyltransferase terminal-interacting protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604028.2 False 1049 mRNA 0.43 7 68212224 68214236
TU488020 True 832 TUCP 0.43 4 68212716 68214104

Neighbor

gene id symbol gene type direction distance location
LOC110524422 gsh0 coding upstream 11371 68193752 ~ 68200853 (+)
LOC110524419 LOC106613886 coding upstream 159327 68010191 ~ 68052897 (+)
LOC110524415 LOC106613887 coding upstream 211947 67996354 ~ 68000277 (+)
depdc1a LOC106613883 coding upstream 216870 67987179 ~ 67995354 (+)
lrrc40 lrrc40 coding upstream 401902 67802829 ~ 67810322 (+)
elavl4 LOC106613894 coding downstream 433580 68647816 ~ 68716531 (+)
LOC110524431 LOC106613897 coding downstream 696698 68910934 ~ 68936736 (+)
LOC118964640 NA coding downstream 982146 69196382 ~ 69222310 (+)
LOC110524443 cep350 coding downstream 1252035 69466271 ~ 69505008 (+)
LOC110524444 LOC106613912 coding downstream 1291259 69505495 ~ 69540163 (+)
G430863 NA non-coding upstream 21498 68190112 ~ 68190726 (+)
G430860 NA non-coding upstream 22115 68185680 ~ 68190109 (+)
G430837 NA non-coding upstream 54794 68157227 ~ 68157430 (+)
G430828 NA non-coding upstream 67605 68144163 ~ 68144619 (+)
G430826 NA non-coding upstream 70096 68141846 ~ 68142128 (+)
G430948 NA non-coding downstream 110588 68324824 ~ 68396956 (+)
G431028 NA non-coding downstream 226388 68440624 ~ 68520768 (+)
G431188 NA non-coding downstream 530527 68744763 ~ 68752767 (+)
G431309 NA non-coding downstream 611415 68825651 ~ 68825945 (+)
G431311 NA non-coding downstream 614731 68828967 ~ 68829171 (+)
G430796 LOC106613888 other upstream 108690 68103179 ~ 68103534 (+)
LOC110524407 LOC106613876 other upstream 747901 67458540 ~ 67464323 (+)
G429156 NA other upstream 1164060 66981949 ~ 67048164 (+)
G428696 NA other upstream 2069619 66142079 ~ 66142605 (+)
G427747 NA other upstream 2690844 65453856 ~ 65521380 (+)
G434653 NA other downstream 2745374 70959610 ~ 70959932 (+)
G434792 LOC106613943 other downstream 3004553 71218789 ~ 71223578 (+)
G434829 NA other downstream 3084379 71298615 ~ 71298900 (+)
ralgps2 LOC106613957 other downstream 3461635 71552653 ~ 71687963 (+)
G436403 NA other downstream 4289224 72503460 ~ 72504435 (+)

Expression


Co-expression Network