spata6 (spata6)


Basic Information

Item Value
gene id spata6
gene name spata6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 68215000 ~ 68231509 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604029.2
CAGAAAGTATAATGGATGTATATTATACTCCCGTTGATGGCAGTAATGCAACATATTGTATGCTAACCGCCTTtaaatcccaaagaagaagaagaatctcTCCGCTCCCTGTTAGTGTTTGGCAGCTATGACAACGAAGTTTGAAAATGGGTGGTTTGACACCTCAGAAGAAGAAGCTCTCCTCCTCTAAAATGTCTCAGAAAGCTCTGAAATGCACCGTGCGAATTAAAATCCAAGCTATTACTTGTCCAGGGGTTGTGTTACCCAATCAGGAAGACATATACCTGAGTGTCTGCGTCATGGGACAGTTCAAGAAGACTCTCTGTCTGCCGCCTGCCTTCCCTCTTCTATTCCATGAGAACATGGTATTTGTGAAGACGTTCACAGGAGCTGCTGACCCAGGTCACATTGTGGACCTCCTTGAAGCTGACACAACATCCTTTGAACTGATTCAGCTTGTGCCTCCAGAGGGGGATATTTTGGCCACTATTGAAGAGAAGACCAGAGAATTCCTCTATCCAGGCCCCAAGCTGACACCTAGAGCCGATGGtcctgagagagagatgctgatgAGGAGATCTATCTGTTTCCCTGGAATCTCTCCTAAAGTGGAGTTTGCAACCATGTCTGTCATTGAGGAATGTGATTGGAAAGATAGCCAGCCTCAGCCTGCTTCCCCTCCGTGTTGTAGACCATCCCCAGCCAAACAGTCCCCAGCAAGGCGTAGACCAGTCAGAGGGGCTGTTGGGAGCCCTAGACAGACGCTGAAAGGGAAGGATCTGAGTCTGATTGGTCCATCCAGTGGTTATGAGCAGCCCACTGTGGCCTCCCAGGCTcgtgctctctctccctacaccCACCGCAGGATGTGCCAACTGTCTGAGGAAGCCAGGCAGAGACTCAGCTACCTCCAACTTGGGCCCTACAAGTTCAAGAAGGAAACAGAGGCCCAGATCCCCTTTGTGGTCACCAGTACTCGGAGTGTCTCCATGATTGAGACTCCTTCATCTTGTCTCTCCTCTAAAATAAGCCTTCCCCACAGCAGGTCCACCAGCTTTGCTCTAGACCCCTTAGGAGATGTCTCTCTCCTTGGCAGCTATAGACCAAAGCCTGTTAAAGTAGGCACTGGCTGTCTGAAGACTCAGAAATCACCAGGGAAGTCTtccagacaggactgttccagAACCACAGTCAGGATGGCCCGGTCAGCCCTGGCTGCCCAGTCCTCTACCCCAGTGTGTGGCCCAAGGAGTCCCCTGCTCAGCCGCTCCTCCCTCAGAGAGCGGTTCCATAGTAGTGAGTCCAGTCCGTCTAAGGAGATCCACAGTCGAGTCCAGAAGATTCTCCACACCCATTCTACTGACAGGAAACTACACTTTGACGAGGATGGGTGTTCGGCTAAGCGGGGGCCTCCGCTCTCCTGTGAAGACTCTTTATGTGACAGCCAAGACAGGGACACTCCTGGAGAGACATCTGTCCACCTGGACAATGGGACATTCTGGAGCAGGCAGGTTGCCTGCTACACAGGGAAACCCCACAGGGCTGTGTTTGAGGACAGTCTGGGACTCATCTACAAGAACATGTACAGGAGGGCCTTGAGCACCACCTGAGACCTACACTATTATTGCTTTAGACACCTGGCTGGGTTCCAATTATGACACTTGATTGCTAAGATGAAGGAACACTGACCCTGTGCTATACCATAACCAAAGCTTTGTCATATGTGCCCTGGTTACACTGATTTTAGCTCATTTATAGGGTTACATGTGTGCACTATTTACAATTTTCCATATTTTTGTACTAAGAATGTTTATCTAAACTGATTTAATGACTGTACTTCTTCAAAATGTCTTTCCTGTCCATCTTGTGGATTTGGTGTACTCATTCTCTGGGTAGAAACTGGTTGAGCAGATGTTAATTCATTTACTCCTAACAAGTATATCAATGGTGGCTATGCATGAAATCTTGATTTCCATTGTTTATGGCCATTAATGtaaaaaggcccagtgcagtcaaacatgtttcatatattgaacaaaaatgcaacgtgttggtcccatgtttcatgagctgaaattaaagatccctgaaatgttc

Function

symbol description
spata6 Predicted to enable myosin light chain binding activity. Predicted to act upstream of or within spermatogenesis. Predicted to be located in sperm connecting piece. Is expressed in neural tube; spinal cord; and ventral mesoderm. Orthologous to human SPATA6 (spermatogenesis associated 6).

NR:

description
spermatogenesis-associated protein 6

GO: NA

KEGG:

id description
K23224 SPATA6; spermatogenesis-associated protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604029.2 True 2097 mRNA 0.48 13 68215000 68231509

Neighbor

gene id symbol gene type direction distance location
slc5a9 slc5a9 coding downstream 24084 68184226 ~ 68190916 (-)
LOC110524417 LOC106613888 coding downstream 100764 68052730 ~ 68114236 (-)
si:ch211-198n5.11 LOC106613885 coding downstream 205406 68002085 ~ 68009594 (-)
lrrc7 LOC106613881 coding downstream 231451 67810595 ~ 67983549 (-)
LOC118936331 dnajc19 coding downstream 701653 67511452 ~ 67513347 (-)
agbl4 LOC100286605 coding upstream 2612 68234121 ~ 68643132 (-)
bend5 LOC106584333 coding upstream 100362 68331871 ~ 68352828 (-)
LOC110524428 LOC106613895 coding upstream 584453 68815962 ~ 68819009 (-)
faf1 LOC106613896 coding upstream 598906 68830415 ~ 68911632 (-)
rnf11b LOC106613899 coding upstream 713422 68944931 ~ 68978449 (-)
G431968 NA non-coding downstream 45925 68168805 ~ 68169075 (-)
G431967 NA non-coding downstream 46333 68168428 ~ 68168667 (-)
G431963 NA non-coding downstream 52520 68162235 ~ 68162480 (-)
G431962 NA non-coding downstream 52947 68161844 ~ 68162053 (-)
G431958 NA non-coding downstream 57869 68156931 ~ 68157131 (-)
G432084 NA non-coding upstream 113645 68345154 ~ 68383762 (-)
G432338 NA non-coding upstream 517049 68748558 ~ 68755057 (-)
G432377 NA non-coding upstream 574505 68806014 ~ 68806320 (-)
G432389 NA non-coding upstream 595465 68826974 ~ 68827650 (-)
LOC110522990 LOC106613902 non-coding upstream 819324 69050540 ~ 69054216 (-)
LOC110524398 LOC106613863 other downstream 1425164 66786837 ~ 66793995 (-)
G428132 NA other downstream 2832410 65370116 ~ 65382590 (-)
G427902 ubxn6 other downstream 3203402 64999708 ~ 65011598 (-)
LOC110524332 LOC106613803 other downstream 3304002 64903039 ~ 64911196 (-)
G432310 LOC106613894 other upstream 468312 68699821 ~ 68707448 (-)
G432513 NA other upstream 773110 69004619 ~ 69006106 (-)
G433683 LOC106613912 other upstream 1291305 69486406 ~ 69524790 (-)

Expression


Co-expression Network