agbl4 (LOC100286605)


Basic Information

Item Value
gene id agbl4
gene name LOC100286605
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 68234121 ~ 68643132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604030.2
TCCTTATCCCTAGACTGCGTTGCCGTGGCAACACTCAGCCAGCGTTGTGCGCTGGTGTGTTGTGCAAAAATGGAAAGGAAGATGGAGGAGAACATGAGAGACGTCGACGCTGGCAGTgaagctggaggagaggatgccTTAGTGGGCAATGTGAACAAGCTGATGGTGACTCCACCAGGATACACAGGAGTTCCACGGAAAGGCCACCTTGTCTTTGATGCTTGCTTCGAGAGTGGTAACCTTGGACGTGTTGATTACATCAGTGAATTTGAGTTTGATCTGTTCATCAGACCTGACACCTGTAACCCTCGCTTCAGAGTTTGGTTCAACTTCACAGTGGAAAACGTGCGGGAGACACAGAGGGTGATTTTCAACATTGTCAACTTTAGCAAGACCAAGAGCCTGTATAGAGATGGCATGTCTCCAGTGGTGAAGTCCACCAGCCGGCCTAAATGGCAAAGACTCCCGACTAAGAATGTGTACTACTACCGTTGCCCTGACCATCGGAGAAACTACGTGATGTCTTTTGCCTTCTGCTTTGATCGAGAGGATGATGTGTACCAATTTGCTTACTGCTACCCCTACACCTACACCAGACTGCAGCACTACCTGGACAGCTTGGAGCGCAGGAACCTGGACTACCTGCAGAGGGAGCAGCTGGGGCTcagtgtgCAACAGCGACGTCTTGACCTCCTAACCATCACCAGCCCTGCTCAACAGAATCCAGAGAAGGTGAAGAAGCTAGTTGTCCTTACAGCCCGTGTACACCCTGGGGAGTCGCCTGCATCCTTCATCTGCCAAGGAGTGATTGACTTCCTAGTCAGCCAGCACCCTGTGGCCCAAACCTTGCGTGACCATGTCATCTTTAAGATTGTACCCATGCTCAACCCTGACGGCGTCTACTTAGGCAACTACAGGTGTTCTCTGATGGGCTTTGACCTTAACCGTCACTGGCAGGAGCCATCCCCCTGGGCCCACCCCACCCTCCACGCCGTCAAGCAGCTCATCGTCCAGCTCAGTCAAGACCCAGTAGGGCTGGAGTTCTACATTGATGTTCATGCCCACTCCACCATGATGAATGGCTTCATGTACGGGAACGTgtttgaggaggaggagagagtccagAGACAAGCCGTGTTCCCTCGCCTGCTCTGCCAAAACGCCCCAGACTTCTCCTTTTCCAACACGTCATTTAACCGTGACGTGGTGAAGGCTGGCACTGGGAGGCGCTTCCTGGGTGGCCTGCTGGACGACACGTCCTACTGCTACACCCTGGAGGTGTCCTTCTACAGCTACATGGCAGCGGGGAGCACGTCGCCCGTTCCCTACACCGAGGACacctACATGAAGCTGGGAAGAAATGTTGCCCGCACCTTCCTCGACTACTACAGGCACAACAACTTCATCGATGACAACAAACTACAAATCCCAAATCACATCAACAGTATGGAGGTATTGTCCCAGGGTCGACAGGGGAATGGAAATGGGAATGGGAGGACTtctgggagtgagagaggagcagagaggaagaaCCAGAGTATCACAGGAGAGTACTAGACACCTGGCAATAACATACTGGAGAGACCAGTCCAGTCTGACCACTGTATAAGGCTCCTGACTCACAGCCCTACACTATATCCACACAGCCCTACACTATATCCACACAGCGCTACACTATATCCACACAGCCCTACACTATATCCACACAGCCCTACACTATATCCACACAGCCCTACACTATATCCTCACAGCCCTCATGAAAATTAGATGCATCAGCCCAAGACAAAGGATGCAATTTCACAAACGGATCACTTTTGGATAACATGTTAATTGGAGGATATTTACCCATGGAACTTCATTAGAGCAAGTTGCTCTGACTGTATGAAATGTATGGGACGAATCAAGCTGACACATACATCTCATGTTCCATTTGAGGCCTTCATACGTCATTCATATATTTTACCACAATGTGCTTTTTCCATTTTAGGTATTGCTTTTTATTCAAATGTATTCACgcatgtcattgaaaataagtgcATGTGTTTTCTCTTGTAAGTAacttattttgtgtttatcttgcCGCTCTGTATCCTACATTATTTGGAGGGGTGTAATGGGAGGGGTAACCCATTTTTGTTTAGTCATGACCTTATCGGTATCTAAGTATTCTGTtgataaaactatgaaatataaCACACATTTGTAAGTTTGTGAAATTGATGGTTAGTCATTGTCAGTGCATTAGTTTACACAGGTGTTTCCGATTTAAAGGAAACAGACTTAGGGTCAATTTGATTTCAACTGAAGTCATTTCATGGATTATAATATAGAAGAAAATTCATGAATTTGAAATCCCTCTAGAAAATGATGGGTATCTATCAAGTATGAACTTGCCCTGAATTGACTGATATCCATTAATTTCCATATCTTACTGCAATGTAAACATCTATTCAACCTATCTGTTCAGAGCACAGAGTGCTTTTCACTGCATTATGTAAAACACCATCCATGGGACTTGCTCAACACAAAGGCATAAGTAGGAGAGCTAGAGAGAATGGTACATTAGTCAAGTGTGGCGTGAAGAACAACATGTAATTTTCAGACCAGTCATTTGGAATAAGTGAGGCAATCTGTCAGCATAAAAGCATACACAAAGGACTTTTACATGGTTGACGAGAAGATGGAGAGGCTGTACGAGAATGACGAAAGACATTTGTCTTTTGATGCTTTCACTGAACATGTGTCAGACCTGGACCTGTCCAACACTAAAGTGCATGTTagcgcatctctctctctctctctctcttgcacacacacacacacacacacacacacaaacaaactgcatgcacacacacaggaaaatgcTTCCTTCTATTCAAAGTGCACGGTCCCCACTGTGCTGCTATCATTTTAAGCTTTATCTAGAGATATTATTCTCTATTGCTTTCTCAATGAGACTGGGCACATTACTTTCTAATTAATTGTACACAGCTATGCATGCGAGAAGTTGAGAATTGTTAATACATTTTCTCTTCAATAGTCAAGAAAATTATATTTCTAATTAGCCGTCCTTACATTTGTTATGCATTATTTAGCCTCTTACCAAATCCCAGAGGCTCTTGTTTATCTAAGAGGATGGTTAATTGCagctgcaggtagcctaatggttaagaGCAGTGGAAATCATCCtcaaggtcgctggttcaaatccttgAGACAACTAGGTGAatatctgtcaatgtgcccttgagtaaggcatTTAACcttagttgctctggataagagcatctgctaaattactcaaatgtaaaagcACTGCAAACAAGTCTGTTTAGAGCCCCGCTGTGGTCAGTGTCACCCTGTATATAACAAAGCCAGTAGAGGTTGGTGTGTATAACTACTCATCTAAAGGATGATCATGAATGCAATACTAATGTGGGGTAGGACTGGAAGTTTGTTTTTCTTAGCAttactcaaataaaataaatgcgtGGCATGATCTAAAGTCCACTTATTTGATCGCTCTTCAGCTCTCATCATTTATCAGGACTACTATGTAACTATTTATTCTCAATCTGCCCAATAAATGGTTTTGGACTTTT

Function

NR:

description
cytosolic carboxypeptidase 6 isoform X1

GO: NA

KEGG:

id description
K23439 AGBL4, CCP6; cytosolic carboxypeptidase protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604030.2 True 3605 mRNA 0.45 13 68234121 68643132

Neighbor

gene id symbol gene type direction distance location
spata6 spata6 coding downstream 2612 68215000 ~ 68231509 (-)
slc5a9 slc5a9 coding downstream 43205 68184226 ~ 68190916 (-)
LOC110524417 LOC106613888 coding downstream 119885 68052730 ~ 68114236 (-)
si:ch211-198n5.11 LOC106613885 coding downstream 224527 68002085 ~ 68009594 (-)
lrrc7 LOC106613881 coding downstream 250572 67810595 ~ 67983549 (-)
LOC110524428 LOC106613895 coding upstream 172830 68815962 ~ 68819009 (-)
faf1 LOC106613896 coding upstream 187283 68830415 ~ 68911632 (-)
rnf11b LOC106613899 coding upstream 301799 68944931 ~ 68978449 (-)
ttc39a LOC106613900 coding upstream 335885 68979017 ~ 69023944 (-)
eps15 NA coding upstream 382789 69025921 ~ 69050378 (-)
G431968 NA non-coding downstream 65046 68168805 ~ 68169075 (-)
G431967 NA non-coding downstream 65454 68168428 ~ 68168667 (-)
G431963 NA non-coding downstream 71641 68162235 ~ 68162480 (-)
G431962 NA non-coding downstream 72068 68161844 ~ 68162053 (-)
G431958 NA non-coding downstream 76990 68156931 ~ 68157131 (-)
G432338 NA non-coding upstream 105426 68748558 ~ 68755057 (-)
G432377 NA non-coding upstream 162882 68806014 ~ 68806320 (-)
G432389 NA non-coding upstream 183842 68826974 ~ 68827650 (-)
LOC110522990 LOC106613902 non-coding upstream 407701 69050540 ~ 69054216 (-)
G432448 NA non-coding upstream 504498 69147630 ~ 69149826 (-)
LOC110524398 LOC106613863 other downstream 1444285 66786837 ~ 66793995 (-)
G428132 NA other downstream 2851531 65370116 ~ 65382590 (-)
G427902 ubxn6 other downstream 3222523 64999708 ~ 65011598 (-)
LOC110524332 LOC106613803 other downstream 3323123 64903039 ~ 64911196 (-)
G432310 LOC106613894 other upstream 56689 68699821 ~ 68707448 (-)
G432513 NA other upstream 361487 69004619 ~ 69006106 (-)
G433683 LOC106613912 other upstream 879682 69486406 ~ 69524790 (-)
G435234 NA other upstream 2347760 70990892 ~ 70991798 (-)

Expression


Co-expression Network