LOC110524428 (LOC106613895)


Basic Information

Item Value
gene id LOC110524428
gene name LOC106613895
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 68815962 ~ 68819009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604035.2
TAGTGGCAATCTCTTGAGTAAGTTAGTGTCTCACGCTGGTGCGAGTATAGCAACCTCGGCTCCTTTTAGGTGATATTAAGTTAAAACAGGGCACTAATTTCTGCAAGTCTCTTGGATTTCTCCTCGTACATAACACTTTAAAAGTTAGTTTTTCAGTACAGATTGTTGCAGAGTTAATCCACTCTTGACAGGCTGCATGGCGTTTTTATACCTTACTCGCGCAAGTTGACAATCGGTATTTTATCTGGTTGCTGCTACGTATCGTTATCTTCAATGGACAGAACACCAGTAGATTAACCTACGTTAGAAGTTGTGCAGGGATGTTGACAACTGTTCGACTGGTGTGAACAATTTACTCCTCAGCATCAATACAAACTACGCTGCATCATCACGTTACTTTTTCCGATTGATAGTAGATATTGATCAGCAATAGGACATGGATCTGAGACCAGAGCTCTCCACCGCACCGTCAGGATCCCAGGTCCACCCTGGAGCCGGAGCGTCTGTCAACATCCCCGTCTCCATGGCCAGTAGCCTCCTGCGGGGTCCAATGCTATATCGCGCAACGGAGAAGTATCCTCGCACCCCGAAGTGTGCCCGCTGCAGGAATCATGGCGTGGTATCTGCGCTGAAGGGCCATAAACGCTATTGCCGCTGGAAGGACTGTATGTGCGCCAAATGCACCCTAATCGCTGAGAGACAGCGCGTAATGGCCGCACAAGTGGCTCTCCGTCGACAGCAAGCTCAGGAAGAGAACGAAGCCCGGGAGCTGCAGCTCCTGTACGGGACAGCAGAAGGGCTAGCTCTGGCGGCCGCCAACGGCATCATACCACCTCGTCAGAGTTATGAGGTCTTCGGTTCTGTCAACAACGAAAGTAACTCCGATTCAAGCATGCAGAAGTTTGAATTGTTTCCGAAGTCCCAAATGTCAGTATCAGTGACCAAGCAGCAGACTGTGGGCAAATCGGTTTCCACTGACAGCGAACCAGGGATCTCATCCCCAGACGGGCGTCATGGCTCAGGCTCCGAGAATGGAGACGGAGAGTCGTTCATTAGCTCTCCTGTCTCCAAGGCAATGAAAGACGGAGAGGACACCCCGGGTTCGATTAGCCCCTTAGGATCTGACTCGGGTTCGGAGACCGACAAAGATGATCAAGAACCATCGGCCGCCTCCAGGCAAATGAACCCCATCGACATATTGACCAGAGTGTTCCCCAGCCACAAGCGAAGTGTTCTCGAACTGGTTCTACAGGGCTGCGGGAAAGACGTGGTGCAGGCCATCGAGCAAATTCTCAACAACAGTGGACAAGCCAAGGCCCCGGAGCAGGTGTGGACAGCAGAACGCATGCTCCAGAGCGCACAGCCGCACCTTTCTTCCACTCCAAGGCCCATGTTACCCGGAGCAATAACGCTGAGCAACCGCTCCGCCTTCTCCCCTCTGCAGCCAAATGCGCCACACTTTGGCGCGGATCCCAGCACCTACCCCCTGAGCACCCATCTGGGACTAAACCCCTTGCGGCTGGCCTACTCGGCCCACAGCAGAGGGCTCACCTTCATGACACCCTACTCCACCACGGGGTTGATGCCAACTCTGGGCTTCAGGCCACCAATGGACTACTCATTCAGTGACCTCATACGGGACAGGACACTCTTGCACAAAGACCAAGGGTACACCAATGGCCTGTATGGGCCCCTCGTCAACAATAACCCAGACAAACCGTTAGACTGAGAATGTGCAATGTTTCATTAACTCAGTCGTGTTGGGGCTAGGATTCAAGTGGACACATTCAGAGAGGAACAGTGTATTTGTAGCCTAGCCACAAGTGTTGAATGTTATGAAGAAATCAGTCATGTTTGATACTCCACTGCTGTACATAATgctttgtttttagtcccatgcGAACCCAGGCTCACTTATATAACTTTGTTTTCTCAGAGAGAGCCTATTATTCCATGGGCATATACACAATTGTTGCTTTAAGTCCCCCGCCAATCATAGTGTGTAACCTGAAAATATCTCGCCAATGAAAGTATTTTGTCTGAAACATTACTAAAGGGGTTGCAATTCCAGAAAAACGGACAGACAAATTATTCATCACACCATAATGTATGCAGTAGCATAATACTGAAGTACATATATGAAGCACATCCAAATTATAACTTAGATATGGTTCCTGTAAATTGTAGGGTTTTGTGAGATTGAAAAAAAGTGGTGCAACCCAATTTCACTTTTTGAAATATTTGGGTTGTTGTGTTTGGTGAACCTGGTGcaattgttactttttatttttagtaTAAAACAAATAAATCTGGAGGAAACATCCAACCTTAGTTACTAAGGAATTATTGctcaaacttaaaaaaaaaacagttttttaggaCAGCCAAGCTTTAAAACAAAAACCGTTCAAGTGGGATCAAGTTATTTCCATAACGTTTAGGTTACTGACTTTGAACATTACAATCGAAAGCTTAATTGTTAAAACGAATGATGTATTGGCATTATTTTTCTGACTTTTTATCCAACAGTACATTGTATATTGCATTTGATTATATAAGATTGATTATATTATAATTGACTTTACCTGTGTACTTTATCCAGCATTTTAtcaactacactacaacactTCTCTGTTTTGTGAAATTGCATTTGTTTGCAAGTCTATTGCTCCTCTGTCACAAGCTGTAGTGTCACATGAAATTACTggaaataaatgttattttatacAAAA

Function

NR:

description
doublesex- and mab-3-related transcription factor A2-like

GO:

id name namespace
GO:0021537 telencephalon development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19491 DMRT4_5, DMRTA; doublesex- and mab-3-related transcription factor 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604035.2 True 2732 mRNA 0.46 2 68815962 68819009

Neighbor

gene id symbol gene type direction distance location
agbl4 LOC100286605 coding downstream 172830 68234121 ~ 68643132 (-)
bend5 LOC106584333 coding downstream 463134 68331871 ~ 68352828 (-)
spata6 spata6 coding downstream 584453 68215000 ~ 68231509 (-)
slc5a9 slc5a9 coding downstream 625046 68184226 ~ 68190916 (-)
LOC110524417 LOC106613888 coding downstream 701726 68052730 ~ 68114236 (-)
faf1 LOC106613896 coding upstream 11406 68830415 ~ 68911632 (-)
rnf11b LOC106613899 coding upstream 125922 68944931 ~ 68978449 (-)
ttc39a LOC106613900 coding upstream 160008 68979017 ~ 69023944 (-)
eps15 NA coding upstream 206912 69025921 ~ 69050378 (-)
LOC110522990 LOC106613902 coding upstream 231531 69050540 ~ 69054216 (-)
G432377 NA non-coding downstream 9642 68806014 ~ 68806320 (-)
G432338 NA non-coding downstream 66979 68748558 ~ 68755057 (-)
G432084 NA non-coding downstream 432200 68345154 ~ 68383762 (-)
G431968 NA non-coding downstream 646887 68168805 ~ 68169075 (-)
G431967 NA non-coding downstream 647295 68168428 ~ 68168667 (-)
G432389 NA non-coding upstream 7965 68826974 ~ 68827650 (-)
G432448 NA non-coding upstream 328621 69147630 ~ 69149826 (-)
LOC110524437 abl2 non-coding upstream 363915 69143474 ~ 69187261 (-)
G433669 NA non-coding upstream 650034 69469043 ~ 69469372 (-)
G432310 LOC106613894 other downstream 108514 68699821 ~ 68707448 (-)
lrrc7 LOC106613881 other downstream 997838 67810595 ~ 67983549 (-)
LOC110524398 LOC106613863 other downstream 2026126 66786837 ~ 66793995 (-)
G432513 NA other upstream 185610 69004619 ~ 69006106 (-)
G433683 LOC106613912 other upstream 703805 69486406 ~ 69524790 (-)
G435234 NA other upstream 2171883 70990892 ~ 70991798 (-)
G435176 NA other upstream 2249016 71068025 ~ 71068887 (-)
LOC110524478 LOC106613944 other upstream 2410173 71226012 ~ 71242283 (-)

Expression


Co-expression Network