Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110524428 |
| gene name | LOC106613895 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 68815962 ~ 68819009 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| doublesex- and mab-3-related transcription factor A2-like |
| id | name | namespace |
|---|---|---|
| GO:0021537 | telencephalon development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K19491 | DMRT4_5, DMRTA; doublesex- and mab-3-related transcription factor 4/5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021604035.2 | True | 2732 | mRNA | 0.46 | 2 | 68815962 | 68819009 |
68,811,000
68,812,000
68,813,000
68,814,000
68,815,000
68,816,000
68,817,000
68,818,000
68,819,000
68,820,000
NC_048569.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| agbl4 | LOC100286605 | coding | downstream | 172830 | 68234121 ~ 68643132 (-) |
| bend5 | LOC106584333 | coding | downstream | 463134 | 68331871 ~ 68352828 (-) |
| spata6 | spata6 | coding | downstream | 584453 | 68215000 ~ 68231509 (-) |
| slc5a9 | slc5a9 | coding | downstream | 625046 | 68184226 ~ 68190916 (-) |
| LOC110524417 | LOC106613888 | coding | downstream | 701726 | 68052730 ~ 68114236 (-) |
| faf1 | LOC106613896 | coding | upstream | 11406 | 68830415 ~ 68911632 (-) |
| rnf11b | LOC106613899 | coding | upstream | 125922 | 68944931 ~ 68978449 (-) |
| ttc39a | LOC106613900 | coding | upstream | 160008 | 68979017 ~ 69023944 (-) |
| eps15 | NA | coding | upstream | 206912 | 69025921 ~ 69050378 (-) |
| LOC110522990 | LOC106613902 | coding | upstream | 231531 | 69050540 ~ 69054216 (-) |
| G432377 | NA | non-coding | downstream | 9642 | 68806014 ~ 68806320 (-) |
| G432338 | NA | non-coding | downstream | 66979 | 68748558 ~ 68755057 (-) |
| G432084 | NA | non-coding | downstream | 432200 | 68345154 ~ 68383762 (-) |
| G431968 | NA | non-coding | downstream | 646887 | 68168805 ~ 68169075 (-) |
| G431967 | NA | non-coding | downstream | 647295 | 68168428 ~ 68168667 (-) |
| G432389 | NA | non-coding | upstream | 7965 | 68826974 ~ 68827650 (-) |
| G432448 | NA | non-coding | upstream | 328621 | 69147630 ~ 69149826 (-) |
| LOC110524437 | abl2 | non-coding | upstream | 363915 | 69143474 ~ 69187261 (-) |
| G433669 | NA | non-coding | upstream | 650034 | 69469043 ~ 69469372 (-) |
| G432310 | LOC106613894 | other | downstream | 108514 | 68699821 ~ 68707448 (-) |
| lrrc7 | LOC106613881 | other | downstream | 997838 | 67810595 ~ 67983549 (-) |
| LOC110524398 | LOC106613863 | other | downstream | 2026126 | 66786837 ~ 66793995 (-) |
| G432513 | NA | other | upstream | 185610 | 69004619 ~ 69006106 (-) |
| G433683 | LOC106613912 | other | upstream | 703805 | 69486406 ~ 69524790 (-) |
| G435234 | NA | other | upstream | 2171883 | 70990892 ~ 70991798 (-) |
| G435176 | NA | other | upstream | 2249016 | 71068025 ~ 71068887 (-) |
| LOC110524478 | LOC106613944 | other | upstream | 2410173 | 71226012 ~ 71242283 (-) |
