faf1 (LOC106613896)


Basic Information

Item Value
gene id faf1
gene name LOC106613896
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 68830415 ~ 68911632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604036.2
ATGGCCTCCGATAGCATGGACAGAGAAATGATTCTTGCTGACTTTCAGGCTTGCACTGGCATTGACAACATTGCAGAGGCAATCACGCTCTTAGAACTCAATAATTGGGATTTAGTGGCAGCCATCAATGGTGTGATGCCACAAGAGAATGGGATCTTGCAAAGCGAGGTGTCTCAGGCCAACATCTATGGGCCTCACAACCAAGCAGCAACAGCAGAGGCAGCAGTGGCCCCACCAGCTACCTCATCGTCTTCCTCCTCTCCGCCATCCTCCTCCTCAGCCTTCTGCCCTGTCCTCCCCTCTCGACACATTGTGGAGCGGCAGCCGCGCATGCTCAACTTCCGGGTGGAGTACCGCCAGCGCACTGTGGAAGTGGTCGTAGAGGAGGGCAGCGCAGTTGGGGAAATCAAACATATTCTTGAGACAGAGCTTCAGGTCCCCATATCACAAATGCAGTTAAAGGGTTGGAAAAGTGGAGACGTATCTGACGTTACGGTTCTGCGAAGTTTACACTTGCCCAAGAACAACAGCCTGTATGTGCTCACCCCAGATATCGCCCCCACTGCCAGCACCAGCCAAAACAGCGTTCTTCAGGAGTCATTAAATCAGAACTTCCTGCTTGTCATCAGCCACCGTGAAGCCCAGAGAGACTACAACCTCAACTTCCCTGGCAGCAGAACCATACAGGAGGTGAAAAGGAATGTTTCAGACCTGACAAACATCCCAGTGCGACACCAACAATGGGAGGGCTGGCCTGCTGCGGCATCTGACGATTCGATGACACTAGCTGCCTCTGGAATCAGCTACCCCTGCCATCACCTCAGTGTGTGTCGAAGGTCCTCACCAGCCAACAACCAGGAGCCCACAGAAGAGTGCGCAGATGTCCACATGGTAAGCGACAGCGAGGGGGATGACTTTGAGGATGCGTCTGAATTTGGAGTGGACGAATCAGAGATGTTCGGTATGGGGTCTTCTACAGGCTGTCGGAAAGCCGCCTTGATGCCAGAGAATAGTGAGAATGAAAGTGATGCCTTACTGCACTTTACTGCTGAATTTTCAACAAGGTACGGAGAATGTCATCCAGTGTTCTTCATTGGTACTTTGGAGGCAGCATCTCAAGAGGCCTTCTATGGCAAAGCCAGAGATAGAAAACTGCTGGCCATCTACCTCCACAATGACGAGAGTGTGCTCAGCAACGTCTTCTGCTCCCAGATGATGTGTGCAGACTCCATAGTGGCCTATCTGAGCCAGAACTTCATCACATGGGCATGGGATGTCACTAAAGAAGCTAACAAAGCCAGACTACTCACCATTTGCACGAGGCATTTTGGCAGTGTGGTGGCACAGACTATTCGGACATACAAGACCGATCAGTTCCCCCTGCTCCTTATTGTCATGGGAAAGAGGACATCAAATGAAGTTTTAAATGTTATTCAAGGCAATACAACAGTGGATGAGTTGATGATGAGGCTAATGGGTGCAATGGAAATCTTCTCAGCTCAGCAGCAAGAGGACATCAAGGATGAGGATGAACGTGAAGCCAGGGAAATGGTGAAGAGGGAGCAGGATGAGGCCTACCAACTGTCATTAGAGGCTGACCGTAAAAAGagagaagcacaggagagagagcaggcagaACAGCTTCGCCTGCAACAGATCCAGAAAGAAGCAGATGatgagaaagaggcCATCCGTCTCTCATTGGAACATGCCCTGCCGCCAGAGCCtgcggaggagggaggagagccaATTAGCAAGCTGCGTATACGAACTCCCAGTGGTGAGTTTCTGGTGCGGCGCTTCCTGGGCAGCACCAAGTTGCAGGTCCTCTTTGACTTTGTGGCCTCCAAGGGCTACCCCTGGGATGACTTCAAACTGCTCACCACCTTCCCCCGCAGAAACATCACCCAGCTAGACCCAGCCTCGTCTTTACTGGAGGCCAAGCTTTTCCCGCAGGAGACCCTGTTCCTGGAAGCTAAAGAGTAGGACAGCCTGGCCATGTGGTGGTGGGACTGGCTGGAAGAGTAGTGAAGAGTTAGCATGGTTTTAGTGGGTCTACAGAGACAGACCACCCTCTCACATGGAGGTgaactctcaaacacacacaatacacaacatatacagtacactattcacactcaccccccccccccccccccccacacacacacacacacacacacacacacacgcgtaagCATCCCTGCTCTCGGCCTGTGCATCGTACATGAATGCCTAGTGTACACGTCTGCACAGAGAAGCTAccacaagcacacagccaaacacTCTCGCCCCTCACTTAATTGCAGTGTCATGGTTTTCTCTGTCCACACTTACAGTATGATAAAGGATATTAATAAGAAACTTTTGAGTAGAAGAACAGCATCACGGACAAGGACTTCCCACTACAGTACGGCTGCtttttttaagtcatgttttGTTTGaataaaataagcaaggagacaTTTCCTGGAGAACGCTGGACTATCTAATCTCCACCTGCAATTGGCCGTACCCCCATTGCTCCCACCTGCCCCTCCATGCACCCAACCAGGGATGGACCCCCTCCTGCCCCCTTCCCACCCGCAGCCAGAGAGGCTCAATGTTCCTGATCTGCACCCCTCCTGCTCTGCTCTGACCAATCTGGTTTTAATTTCAAAATGCTCCACAACCAACTGTTACTACTTTATTTTTCTTGATCCTTTTTAAGTTTGATGCTGTATTAGTTTTAGTTTGATATacattatataaaatatatatgaaCATGCATCCGTCTGAGCCAGCACTCTCTtggaacgcgcacacacacatacacgtcatATGAATTTTGTATTATTGTGGccttttgtgatttttttttttttttttttccccctaatTTAAGTGGTATCGTTAATACAGATTTGACCGTGAGTGTGTTGAGCTGTAGTGGAGAGATGGGTAGGCTATTCATTTTGTAAATCTGACTTGGAACATTTAGTATTTTAAGTGGCTATTAGGTTTTATTTAAATTTGGTTTATTCCTTGTCACCTTCTGAGTCATTATTTCAGGGTTTCTGTCAATGAGACCTCAGCAAACTTTCTACAAAACATTAAAGCTATTATATTATTTAAACCATTTATTGTCTATTTGGCCAGCAGGCTATGGGCTGTCCTTGTATGAAGGATCTGAATAGGAGTTTTTGTGTTTGACTCTAAAGTGTGTACGTCAGCATGCTGAACTCCGTTAGCTAACATGGTAAGCTTCCTGTCAAGCCAGGCATGGGGAAAATACACCACATCTGGTCAGCGATTGGCTCTCTGGAGTAGCTGTGAAGACTACATGTCGATATGCAGCCTGAGTTTGCTTTAGACATTTGAGACATTTCTAAAAGCAATACGTTTGGATGAACTTCAGTGTACTGAGTGACTGAATTCCTGATGGACAATCAGTTCTATTATCTAATATAAAAAATTTAACTAGTGA

Function

NR:

description
FAS-associated factor 1-like

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0060037 pharyngeal system development biological_process

KEGG:

id description
K20703 FAF1; FAS-associated factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604036.2 True 3466 mRNA 0.48 19 68830415 68911632

Neighbor

gene id symbol gene type direction distance location
LOC110524428 LOC106613895 coding downstream 11406 68815962 ~ 68819009 (-)
agbl4 LOC100286605 coding downstream 187283 68234121 ~ 68643132 (-)
bend5 LOC106584333 coding downstream 477587 68331871 ~ 68352828 (-)
spata6 spata6 coding downstream 598906 68215000 ~ 68231509 (-)
slc5a9 slc5a9 coding downstream 639499 68184226 ~ 68190916 (-)
rnf11b LOC106613899 coding upstream 33299 68944931 ~ 68978449 (-)
ttc39a LOC106613900 coding upstream 67385 68979017 ~ 69023944 (-)
eps15 NA coding upstream 114289 69025921 ~ 69050378 (-)
LOC110522990 LOC106613902 coding upstream 138908 69050540 ~ 69054216 (-)
LOC110524435 LOC106613903 coding upstream 154384 69066016 ~ 69076209 (-)
G432389 NA non-coding downstream 2765 68826974 ~ 68827650 (-)
G432377 NA non-coding downstream 24095 68806014 ~ 68806320 (-)
G432338 NA non-coding downstream 81432 68748558 ~ 68755057 (-)
G432084 NA non-coding downstream 446653 68345154 ~ 68383762 (-)
G431968 NA non-coding downstream 661340 68168805 ~ 68169075 (-)
G432448 NA non-coding upstream 235998 69147630 ~ 69149826 (-)
LOC110524437 abl2 non-coding upstream 271292 69143474 ~ 69187261 (-)
G433669 NA non-coding upstream 557411 69469043 ~ 69469372 (-)
G433670 cep350 non-coding upstream 558132 69469764 ~ 69470321 (-)
G432310 LOC106613894 other downstream 122967 68699821 ~ 68707448 (-)
lrrc7 LOC106613881 other downstream 1012291 67810595 ~ 67983549 (-)
LOC110524398 LOC106613863 other downstream 2040579 66786837 ~ 66793995 (-)
G432513 NA other upstream 92987 69004619 ~ 69006106 (-)
G433683 LOC106613912 other upstream 611182 69486406 ~ 69524790 (-)
G435234 NA other upstream 2079260 70990892 ~ 70991798 (-)
G435176 NA other upstream 2156393 71068025 ~ 71068887 (-)
LOC110524478 LOC106613944 other upstream 2317550 71226012 ~ 71242283 (-)

Expression


Co-expression Network