rnf11b (LOC106613899)


Basic Information

Item Value
gene id rnf11b
gene name LOC106613899
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 68944931 ~ 68978449 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604042.2
TGTTGCTAAGTTCGTTACCTTCCCCGCGTTTGACGGGGCTGGAAAGTCCCTTTCAAATGGTCTTCAGTCTGAAGATGAGAATCCGTTTTTAGAGCATTAATAACTATTAGGTGTTTAGCATTATTACGTTCAACCTGCACACAGGCGTTGTGAGAGTTCTAGCTAGCAAACAACCGCTAAATCACTTCAGTTTGAGGGTGTACATTGGCTAGGTGGCCAGCCAGGCTCTTTGTGTAGggatgttttgtttttgttgatcACAGCTCTCGTAGCTTGTTAGATCATTTGCAATGTGTTGAAGCCCATAATATTGATAGCATACGGTGCTATTTTTTACTGAAAGGTTAGAAAAAGTAGCCTGTGGACGTTGCAAAGCGACAAATATATAAGGAGTTTGACGTCGAGGAGATGGGGAATTGTCTAAAATCTCCAACCTCGGATGATATTTCCTTGCTTCATGAATCACAATCGGATAGAGCTAGTTATGGTGATGGGGCAGATCCAGATCAGGAACCACCGCCACCATACCAGGAGCAGCCCTATGTGCCAGTGTACCACCCCACGCCCAGTCAGGCCCGCCTGGCCAGCCAGCTAACAGAGGAGGAGCAGGTCCGCATTGCCCAACGCATTGGCCTCATACACCACCTCCCCAAGGGAGTGTACGACGCTAGCAGGGACGGCTCCGAGAAGAAAATCAGAGAGTGTGTGATTTGCATGATGGACTTTGTGTATGGAGACCCCATCCGGTTCCTGCCCTGCATGCACATCTACCACATGGACTGTATAGATGACTGGCTGATGCGCTCCTTCACCTGCCCCTCCTGCATGGAGCCAGTGGATGCTGCGCTGCTCTCCTCCTACGAGACCAACTGAGACACAACAGCACCACCGCTACCACCCCTGCACACTGTTTTGACTTACTCCCGCATTCCACCTATGCGGCCCCCTCCAGCATCCCCATGACCCACAGACAGCACCTCCAACATGGGGGAGGGTCACAGCCTCTGGGAGCAGTtgagggctgtgtggtggtgttgaAGGGTGCTGTGGAGGCGATGGATGGCTAACACAGAGAGGGGGCCTCTACCTTCTGGCCTGGCCTGCTGGACAGGAAAGCACAGGCTGGGGGAGGACTGTGGATACTGGTGACCAAGACTGTCTCTTACTGTCATATATCACCCTCTGTCCACAGCCAACATTTTTAACACGTTAAAACTCTCTAGAAATACAGATATATGCAAAGATCTCTTGCAAGGAGGTGATTCACTGGCTTTCCTCTCCTTAACATTGTGTTCAAGTCGGAAGCTCTGTTCTACCAGTCCTCTTAAGGGCTCATTATTAGGAGCAAACTATTAATGCACATGTACACAAATCAGAAGAACTTCCACTTATTTTCTAGCCCCAGTGGAAGAGTTCAGCATATGCTTACAAAATATTTGAATAGAAACACTTCATTTTCTCATATTCAGTAACCGCAACATGATTGTTTCAACCCAATGGTAAGGTTTGTTTTCCTGATTTGGTGAGTTTCTTAGACTAATGATCAGTCAAAAACTGATCATATTGGTCTGCTAGGGGTTGGTCGCAAGGTGTGTTCGATCAAAATACTCTTGTTTAGCACAGTCTTTCTAGACTGCACATCACGTTTCATACCAGAGATATTCAACCGTCGATTCACCCCATTCAGAACAAGTGTCTTAGTCATATTACCAAGACCATATGATTTATCACAATTAGGCCCCTGTGTTTTGGTTaatcatgtcacatgacctggATTTTAACCTTTTCTTTTTAGCCTTTTCCAGAATTTAGATTAAAAATGAAAGCAAATTGTCTAAGGATGGAGCTGATGCATCTGACATAAAAAGTTTGATGAAAAAGCTTTAAATAATGGTTGAAATccaggtcatgtgacatgattaaccaaaacacagggccctagTTCATAATGCATACACACAAGTCATTCAGTTAGTTTCAATGAATTAAGTTACATGCCCTAGTGTTTATTTATTAGTTCAACATATGAATCATCAGGTTGTTGTGCAAGGGGTTTGGAAATGAGTGTGCTAACCACCCCAAACCTTTAGATTTTTGTGTTCGTCTGCATCTGTCTGAGCACGTGTTTCCTCATCCTACTTGTAAATAATGTTGTTTTTCCAAGACTTTCATGATTTTCATACTTAAACATAGAAAAAATCTTGAATGTATTATGATAACATGCTGGAACCTTTTAACAACTATTCAATCAGCACAGTTCGCTGTAACCAATAGTTAATAAATAATGGGTGTGGTTTTGGTCATGTTATGTTGCTGTATTTTGACTGGCTCGAATTAAATGCAAATGTTTATTTTAAATGGGGGCAAGGTATCTTTCATGTTAAGTGATCATTTTACGACATTTAATAAAagtattttagatgta

Function

NR:

description
PREDICTED: RING finger protein 11

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11980 RNF11; E3 ubiquitin-protein ligase RNF11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604042.2 True 2425 mRNA 0.43 3 68944931 68978449

Neighbor

gene id symbol gene type direction distance location
faf1 LOC106613896 coding downstream 33299 68830415 ~ 68911632 (-)
LOC110524428 LOC106613895 coding downstream 125922 68815962 ~ 68819009 (-)
agbl4 LOC100286605 coding downstream 301799 68234121 ~ 68643132 (-)
bend5 LOC106584333 coding downstream 592103 68331871 ~ 68352828 (-)
spata6 spata6 coding downstream 713422 68215000 ~ 68231509 (-)
ttc39a LOC106613900 coding upstream 568 68979017 ~ 69023944 (-)
eps15 NA coding upstream 47472 69025921 ~ 69050378 (-)
LOC110522990 LOC106613902 coding upstream 72091 69050540 ~ 69054216 (-)
LOC110524435 LOC106613903 coding upstream 87567 69066016 ~ 69076209 (-)
LOC118964770 NA coding upstream 106733 69085182 ~ 69085265 (-)
G432389 NA non-coding downstream 117281 68826974 ~ 68827650 (-)
G432377 NA non-coding downstream 138611 68806014 ~ 68806320 (-)
G432338 NA non-coding downstream 195948 68748558 ~ 68755057 (-)
G432084 NA non-coding downstream 561169 68345154 ~ 68383762 (-)
G431968 NA non-coding downstream 775856 68168805 ~ 68169075 (-)
G432448 NA non-coding upstream 169181 69147630 ~ 69149826 (-)
LOC110524437 abl2 non-coding upstream 204475 69143474 ~ 69187261 (-)
G433669 NA non-coding upstream 490594 69469043 ~ 69469372 (-)
G433670 cep350 non-coding upstream 491315 69469764 ~ 69470321 (-)
G432310 LOC106613894 other downstream 237483 68699821 ~ 68707448 (-)
lrrc7 LOC106613881 other downstream 1126807 67810595 ~ 67983549 (-)
LOC110524398 LOC106613863 other downstream 2155095 66786837 ~ 66793995 (-)
G432513 NA other upstream 26170 69004619 ~ 69006106 (-)
G433683 LOC106613912 other upstream 544365 69486406 ~ 69524790 (-)
G435234 NA other upstream 2012443 70990892 ~ 70991798 (-)
G435176 NA other upstream 2089576 71068025 ~ 71068887 (-)
LOC110524478 LOC106613944 other upstream 2250733 71226012 ~ 71242283 (-)

Expression


Co-expression Network