LOC110522990 (LOC106613902)


Basic Information

Item Value
gene id LOC110522990
gene name LOC106613902
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69050540 ~ 69054216 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110522990
TTGAGGTCAGGATTTTGACCAATATAGCATGTAACTAGCCATAGCTAGTTTTACTGCTAGATTTAGTGTCTATAAAATGTATGGTATTTATTTACATTGTTAATTACATTTTCTATTTTAgagggtgtttttttttttttttagcaagctGAAATGACAACCCTGTCGATGCTTTTGATGGCCGTATCGATCGCATCACTATTTGCTGAGTCCTCCATTTATTTCCGAGAACAATTtgaagatggggggggggtgtaagttCTGAATAAATACTGAACCTTcctgttttttttgggggggggggggtcgagatTTGAAATGTGGTGATTGGACTACATGTCATATGTTGGATGAGTGTCACAGAGACACAATTTCATAGCCTGCTCACTTTATGCAATATCAGCTTGACATGCTCAAAATGTAGTTCACATTTAGCTGACATGTTCTGATTTAGTGATTACTCATCAATGGGTTGCATGCACTCCCTCTGCTCTTTTCCCAGATCAACTACACAGGTACATGGCCCTTGCCGAGTGGCTCTGTCCTCATTACTCAGGTGACTTACTTACACCTGATTTTTGAATAACATTTCGCAGATGCCTGGAAAAGCTGATGGGTGGAATCTAAACACAAGTCAGACTATGGGAAGTTTGTTCTCACTGGTGGGAAATTCTATGGAGACGTTGACAAAGACAAAGGTGCCTCTGTCATTTTGTCATTTAGGCTCCAGCAATAGAATCTGGTGTGTCTAGCTGTTTCTCAATAGGTTGACACTTGATATGAGTATTTCTTGAGCGTTTTAAACATTTCAGGCCTTCAAACCAGCCAGGATGCTCGCTTTTACTCTGCATCCTCCCGCTTTGAGTCCGTCAACAACAAAGACCAGTCACTGGTAATCCAGTTTACTGTGAAACATGAACAGAACATTGACTCTGGTGGAGGCTACCTCAAGCTTTTCCCAGCTGATCTCAACCAGGAGGAAATGCATGGAGAATCCACAAACAACATCATGTTTGGATGATGAATATACCCACATGTACACACTGGTAGTCAATCCGGATAACACCTACGAGGTGGAGATCAACAACAAGAAAGTTGAGTCTGGAAGCCTAGAGGAGGACTGGGACTTCCTCCCCCCAAGAAGATAAAGGACCCTGATGCTGAGAAGCCAGATGACTGGGATGAGAGAACATTGATGATCCTGAAGACAAGAAACCAGAGGACTGGGATGTGGCTGAGACTATCCCTGACCCTGATGCCAAGAAGCTTGATGACTGGAACGATGAGATGGATGGTGAATGGGAGCCTCCCATGGTCACGGACCCTGACTATAAGGGGGAGTGGAAGCCCAAACAGATTGACAATCCTGCCTCCAAGGGGAAATGGGTGAACCCTGAAATTGACAACCCTGACTACACTGCTGACCTTGAAATATGCCAGCATGGGGGTGATTGGATATGTGGCAGGTGAAGTCAGGgactatttttgacaactttctCAATGAACCAAAGCTTGCAGAAGTAGGGAACGAGACATGGGGTGCAACAAAGGACCCTGAAAAGATGATGACGGACAgtcaggaagaggagagaaagaaacgGGATGGAGAAGAGATTAATAaaaaggagggagaagaggatgaAGAAATTGACTCTAAACACAAAGATGAGATGAACTTCTGAAAAGGAACCCTGTCTACTATGATCCATTGGCGCAAGGCTGAAGATGGGGCTTTGTTTGGCCTTTCCGTTAATGATTTATGCTTCTCCCCCAAAACAAATGGGTAGCTATTGTTTTGCCTACATCACAAGGGAAGGGGCGAAAACTAAGGACAGCAATTAGTTATGTTTCCATGTTATGTTGATAATCTATAGGAGTTCAGATTTGAGATTTGGTTGAAGATTTATTGTTAGAtttgagatttttattttttagcaGTGACATGCCAGTAATTGTTTTTGAAAGTGAAGTTTACAACAATTTGAATCTCATCTCTGAAAACAATGTTCTTCTGCTAACTACATTAAGTATATTGACCATCTCAAATTTCCTGACAATGTTTACctcaatgcattttttttgtgtatttaaaaaaaaaaatctgacacattTTTGTTGAGTCTGTGCTACCTGATGTCTGGTAGGTGCTTGTACCCCAAACATGTATATGGCATTATgatggtgtatatgtgtgtggagaGATATATTGTTTTGGCTATGGTGTGAAAGTCTACTGATTATCCTTTTCTGCAGCTTATTTTCAGCACTCATGGGGTCACTCTGTGTATTGGGTAGGCAGTTTTCACTAACTACTCAAGCTACCTTAAATCAAATGCACCTATTTTCTAAATTGAAAATAAGCTCAGACTGCATACATACAGCTGTTAAGATATTCTAAAGCAGGAGGCTCTGATATTGATATGTTcattttgggattttttttttaaactggaaTTTTCCCCCCTCTGGATTTTAATGTAAATGTTTCTGCACTGCTCTACCCTAAAGCCTTGTCCCTATGCTGATTGGAAGTTGACCCTGTTGTGAAACATTTTAGACTATGTATGGGGAGGCTGTTTTCATTTTATTGTGGAAGGAAGAAGTTCTTATACAGATTACTCTCCAATAATGCAACATAAAGGAAGTGACTCAA
>TU489754
CTACATGTCATATGTTGGATGAGTGTCACAGAGACACAATTTCATAGCCTGCTCACTTTATGCAATATCAGCTTGACATGCTCAAAATGTAGTTCACATTTAGCTGACATGTTCTGATTTAGTGATTACTCATCAATGGGTTGCATGCACTCCCTCTGCTCTTTTCCCAGATCAACTACACAGGTACATGGCCCTTGCCGAGTGGCTCTGTCCTCATTACTCAGGTGACTTACTTACACCTGATTTTTGAATAACATTTCGCAGATGCCTGGAAAAGCTGATGGGTGGAATCTAAACACAAGTCAGACTATGGGAAGTTTGTTCTCACTGGTGGGAAATTCTATGGAGACGTTGACAAAGACAAAGGTGCCTCTGTCATTTTGTCATTTAGGCTCCAGCAATAGAATCTGGTGTGTCTAGCTGTTTCTCAATAGGTTGACACTTGATATGAGTATTTCTTGAGCGTTTTAAACATTTCAGGCCTTCAAACCAGCCAGGATGCTCGCTTTTACTCTGCATCCTCCCGCTTTGAGTCCGTCAACAACAAAGACCAGTCACTGGTAATCCAGTTTACTGTGAAACATGAACAGAACATTGACTCTGGTGGAGGCTACCTCAAGCTTTTCCCAGCTGATCTCAACCAGGAGGAAATGCATGGAGAATCCACAAACAACATCATGTTTGGATGATGAATATACCCACATGTACACACTGGTAGTCAATCCGGATAACACCTACGAGGTGGAGATCAACAACAAGAAAGTTGAGTCTGGAAGCCTAGAGGAGGACTGGGACTTCCTCCCCCCAAGAAGATAAAGGACCCTGATGCTGAGAAGCCAGATGACTGGGATGAGAGAACATTGATGATCCTGAAGACAAGAAACCAGAGGACTGGGATGTGGCTGAGACTATCCCTGACCCTGATGCCAAGAAGCTTGATGACTGGAACGATGAGATGGATGGTGAATGGGAGCCTCCCATGGTCACGGACCCTGACTATAAGGGGGAGTGGAAGCCCAAACAGATTGACAATCCTGCCTCCAAGGGGAAATGGGTGAACCCTGAAATTGACAACCCTGACTACACTGCTGACCTTGAAATATGCCAGCATGGGGGTGATTGGATATGTGGCAGGTGAAGTCAGGgactatttttgacaactttctCAATGAACCAAAGCTTGCAGAAGTAGGGAACGAGACATGGGGTGCAACAAAGGACCCTGAAAAGATGATGACGGACAgtcaggaagaggagagaaagaaacgGGATGGAGAAGAGATTAATAaaaaggagggagaagaggatgaAGAAATTGACTCTAAACACAAAGATGAGATGAACTTCTGAAAAGGAACCCTGTCTACTATGATCCATTGGCGCAAGGCTGAAGATGGGGCTTTGTTTGGCCTTTCCGTTAATGATTTATGCTTCTCCCCCAAAACAAATGGGTAGCTATTGTTTTGCCTACATCACAAGGGAAGGGGCGAAAACTAAGGACAGCAATTAGTTATGTTTCCATGTTATGTTGATAATCTATAGGAGTTCAGATTTGAGATTTGGTTGAAGATTTATTGTTAGAtttgagatttttattttttagcaGTGACATGCCAGTAATTGTTTTTGAAAGTGAAGTTTACAACAATTTGAATCTCATCTCTGAAAACAATGTTCTTCTGCTAACTACATTAAGTATATTGACCATCTCAAATTTCCTGACAATGTTTACctcaatgcattttttttgtgtatttaaaaaaaaaaatctgacacattTTTGTTGAGTCTGTGCTACCTGATGTCTGGTAGGTGCTTGTACCCCAAACATGTATATGGCATTATgatggtgtatatgtgtgtggagaGATATATTGTTTTGGCTATGGTGTGAAAGTCTACTGATTATCCTTTTCTGCAGCTTATTTTCAGCACTCATGGGGTCACTCTGTGTATTGGGTAGGCAGTTTTCACTAACTACTCAAGCTACCTTAAATCAAATGCACCTATTTTCTAAATTGAAAATAA

Function

NR:

description
PREDICTED: calreticulin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110522990 False 2653 mRNA 0.42 6 69050540 69054216
TU489754 True 2028 lncRNA 0.42 6 69050833 69053884

Neighbor

gene id symbol gene type direction distance location
eps15 NA coding downstream 162 69025921 ~ 69050378 (-)
ttc39a LOC106613900 coding downstream 26596 68979017 ~ 69023944 (-)
rnf11b LOC106613899 coding downstream 72091 68944931 ~ 68978449 (-)
faf1 LOC106613896 coding downstream 138908 68830415 ~ 68911632 (-)
LOC110524428 LOC106613895 coding downstream 231531 68815962 ~ 68819009 (-)
LOC110524435 LOC106613903 coding upstream 11800 69066016 ~ 69076209 (-)
LOC118964770 NA coding upstream 30966 69085182 ~ 69085265 (-)
LOC110524436 LOC106613904 coding upstream 32743 69086959 ~ 69135091 (-)
LOC110524437 abl2 coding upstream 89258 69143474 ~ 69187261 (-)
soat1 soat1 coding upstream 133646 69187862 ~ 69198259 (-)
G432389 NA non-coding downstream 222890 68826974 ~ 68827650 (-)
G432377 NA non-coding downstream 244220 68806014 ~ 68806320 (-)
G432338 NA non-coding downstream 301557 68748558 ~ 68755057 (-)
G432084 NA non-coding downstream 666778 68345154 ~ 68383762 (-)
G431968 NA non-coding downstream 881465 68168805 ~ 68169075 (-)
G432448 NA non-coding upstream 93414 69147630 ~ 69149826 (-)
G433669 NA non-coding upstream 414827 69469043 ~ 69469372 (-)
G433670 cep350 non-coding upstream 415548 69469764 ~ 69470321 (-)
G433680 NA non-coding upstream 430121 69484337 ~ 69484789 (-)
G432513 NA other downstream 44434 69004619 ~ 69006106 (-)
G432310 LOC106613894 other downstream 343092 68699821 ~ 68707448 (-)
bend5 LOC106584333 other downstream 697795 68331871 ~ 68352828 (-)
lrrc7 LOC106613881 other downstream 1232416 67810595 ~ 67983549 (-)
G433683 LOC106613912 other upstream 468598 69486406 ~ 69524790 (-)
G435234 NA other upstream 1936676 70990892 ~ 70991798 (-)
G435176 NA other upstream 2013809 71068025 ~ 71068887 (-)
LOC110524478 LOC106613944 other upstream 2174966 71226012 ~ 71242283 (-)
il23r LOC106613945 other upstream 2232174 71285725 ~ 71308015 (-)

Expression


Co-expression Network