LOC110524435 (LOC106613903)


Basic Information

Item Value
gene id LOC110524435
gene name LOC106613903
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69066016 ~ 69076209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978211.1
TCTATACTGTGTTATGTTTGTTCGCGTAGCACTCCTTACAGGCCGTTTGGTGtacgttttttgggggggtgagaTGAAATCTCCAATTGTGAAAGGTATTATAGTACATCATTATTGCAACACAAGATTTGTTCAAACCTAAAATGTTAGTCCGTAATCGTAACATGGTGTTTTGCATGTTCACAGATTAAATGTAACGTTTACGTTCCATGTTTCACGCATTGCTTTTCTTACTATCCTAACAATTTATTAATGGATTTTCTAACGATACGTACATTCCATCTTTTGGCAGATATTTCGCTCCATAGTATGACAGGTTTGAATGGACAGAGGTTTGAAGAATGCCATCATTAACGACCACTCTCTTATAATCGCACATTTACGGCGTCACTGATGTTCTTCTACCCACTATTGTCCATATTTTGGGCTGTTTCTGCAAAGGCAGATTTCTTTCAATTTGACAGTATTTCTAATGTATCTACGTATTATTTCAATTATATTTATTGTAATATATGGGAAGGGGAGTGTCAACAGAATCAAGATGATGCGACTCAGCAAGTACCTACTAGGGACCTATGGGCAGCATTCCCTCAAGACTATATCAGTTTGCTGTCACAGTGGTATTGCAGCCTGGGACAGTGCTGTGAATCAGGGGATTGTCGGATAACAAATAATATTACAGGTCTGGCTAGTGATCTACAGCTAAAGCTTCATGGGCAGCACCTTGCCCAATCAGTGGTTCTGAAGGCTGTGCAGGGCTTCATCAGTAACCCTGAATCCAATAAGCCATTGACCCTCTCCTTCCATGGCTGCTCCGGCACCGGCAAGAACTTTGTGACCCGGATTGTAGCTGACAACTTGTACCGGGACGGGGTGAAGAGCGAGTGTGTGCGTCTGTTCATCGCCCCATTCCATTTCCCCCATGCCAGACTAGTGGACACGTACAAGGGCCAGCTCAGAGAAGCTATCCGGGACATGGTGCTGCGTTGCCCACAGACACTTTTCATCTTTGATGAGGCTGAGAAACTGCACCCCGGCCTTATAGATGCTATCAAGCCCTATATGGACCATTATGACAATGTGGATGGGGTCAGCTATAGGAGGGCTGTCTTCTTATTCCTCAGTAATATAGGTGGGACCACCGTCAACGATGTGGCCTTGGACTTCTGGCACTCAGGGCAAAACAGAGAGGACATTGGGATGGAGGACTTGGAACACCGGCTACGTGCTGAAGCTATGGATTCTCAAGGAGGCTTTGCACAGAGTGAACTGATGTCAGGTCACCTTATTGACTTCTTTGTGCCCTTCCTACCTCTGGAGTACCGTCATGTCAAGCTCTGTGCCCGTGATGCCTATGCAGCGCGGGGTCTGGAGCCAGACGAGGGAACACTGGACGAAGTGGCGAAGGCCATGCTATATACACCCAAGGAGGAGAGGCTGTTCTCTGCCCAAGGCTGCAAATCCATACCACAGAGGATCAATTTCTTCCTACCCTAAACAGACCAATGCAACACATGAACAGTGTTTTGGCAAAAAGGAAAAAGTATGTCCTGCTGACATATTGAACATTTCTGCAATGGCACATGTCAATCGAACATGTGGTATGCCCACTCTTCACCCTACACTGCCAAGAAAGGAAGCATAGAGCATCTGGCTATAGTAAGATTCAATCTGATAACGAAGAGATTTTAGAGTGCATTTTCAACTTCCTCAGACAATTTTTATGCAATTATTTTACGTGAAGTAGTATTATTAtttgcatgtacagtaccagtcaaatgtttggacacacctactcattcaagggttttcctttatttgtacttttttctaCATCATAGAATACATATAATatatgtagaataatagtgaagacatcaaaatgatgaaataacacatggaatcatgtagtaagccaAAGTGTtaaaaatcaaattatatttgattcttcaaagtagccaccctttgccttgaca
>XM_021604051.2
TCCGGTTTCCCTGACTTCCGTTTTTTTCTATACTGTGTTATGTTTGTTCGCGTAGCACTCCTTACAGGCCGTTTGGTGtacgttttttgggggggtgagaTGAAATCTCCAATTGTGAAAGATATTTCGCTCCATAGTATGACAGGTTTGAATGGACAGAGGTTTGAAGAATGCCATCATTAACGACCACTCTCTTATAATCGCACATTTACGGCGTCACTGATGTTCTTCTACCCACTATTGTCCATATTTTGGGCTGTTTCTGCAAAGGCAGATTTCTTTCAATTTGACAGTATTTCTAATGTATCTACGTATTATTTCAATTATATTTATTGTAATATATGGGAAGGGGAGTGTCAACAGAATCAAGATGATGCGACTCAGCAAGTACCTACTAGGGACCTATGGGCAGCATTCCCTCAAGACTATATCAGTTTGCTGTCACAGTGGTATTGCAGCCTGGGACAGTGCTGTGAATCAGGGGATTGTCGGATAACAAATAATATTACAGGTCTGGCTAGTGATCTACAGCTAAAGCTTCATGGGCAGCACCTTGCCCAATCAGTGGTTCTGAAGGCTGTGCAGGGCTTCATCAGTAACCCTGAATCCAATAAGCCATTGACCCTCTCCTTCCATGGCTGCTCCGGCACCGGCAAGAACTTTGTGACCCGGATTGTAGCTGACAACTTGTACCGGGACGGGGTGAAGAGCGAGTGTGTGCGTCTGTTCATCGCCCCATTCCATTTCCCCCATGCCAGACTAGTGGACACGTACAAGGGCCAGCTCAGAGAAGCTATCCGGGACATGGTGCTGCGTTGCCCACAGACACTTTTCATCTTTGATGAGGCTGAGAAACTGCACCCCGGCCTTATAGATGCTATCAAGCCCTATATGGACCATTATGACAATGTGGATGGGGTCAGCTATAGGAGGGCTGTCTTCTTATTCCTCAGTAATATAGGTGGGACCACCGTCAACGATGTGGCCTTGGACTTCTGGCACTCAGGGCAAAACAGAGAGGACATTGGGATGGAGGACTTGGAACACCGGCTACGTGCTGAAGCTATGGATTCTCAAGGAGGCTTTGCACAGAGTGAACTGATGTCAGGTCACCTTATTGACTTCTTTGTGCCCTTCCTACCTCTGGAGTACCGTCATGTCAAGCTCTGTGCCCGTGATGCCTATGCAGCGCGGGGTCTGGAGCCAGACGAGGGAACACTGGACGAAGTGGCGAAGGCCATGCTATATACACCCAAGGAGGAGAGGCTGTTCTCTGCCCAAGGCTGCAAATCCATACCACAGAGGATCAATTTCTTCCTACCCTAAACAGACCAATGCAACACATGAACAGTGTTTTGGCAAAAAGGAAAAAGTATGTCCTGCTGACATATTGAACATTTCTGCAATGGCACATGTCAATCGAACATGTGGTATGCCCACTCTTCACCCTACACTGCCAAGAAAGGAAGCATAGAGCATCTGGCTATAGTAAGATTCAATCTGATAACGAAGAGATTTTAGAGTGCATTTTCAACTTCCTCAGACAATTTTTATGCAATTATTTTACGTGAAGTAGTATTATTAtttgcatgtacagtaccagtcaaatgtttggacacacctactcattcaagggttttcctttatttgtacttttttctaCATCATAGAATACATATAATatatgtagaataatagtgaagacatcaaaatgatgaaataacacatggaatcatgtagtaagccaAAGTGTtaaaaatcaaattatatttgattcttcaaagtagccaccctttgccttgaca

Function

NR:

description
torsin-1A-like isoform X1

GO:

id name namespace
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
K23000 TOR3A, ADIR; torsin-3A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978211.1 False 1976 mRNA 0.43 6 69066016 69076183
XM_021604051.2 True 1805 mRNA 0.44 7 69066016 69076209

Neighbor

gene id symbol gene type direction distance location
LOC110522990 LOC106613902 coding downstream 11800 69050540 ~ 69054216 (-)
eps15 NA coding downstream 15638 69025921 ~ 69050378 (-)
ttc39a LOC106613900 coding downstream 42072 68979017 ~ 69023944 (-)
rnf11b LOC106613899 coding downstream 87567 68944931 ~ 68978449 (-)
faf1 LOC106613896 coding downstream 154384 68830415 ~ 68911632 (-)
LOC118964770 NA coding upstream 8973 69085182 ~ 69085265 (-)
LOC110524436 LOC106613904 coding upstream 10750 69086959 ~ 69135091 (-)
LOC110524437 abl2 coding upstream 67265 69143474 ~ 69187261 (-)
soat1 soat1 coding upstream 111653 69187862 ~ 69198259 (-)
si:dkey-21p1.3 LOC106613908 coding upstream 122278 69198487 ~ 69228669 (-)
G432389 NA non-coding downstream 238366 68826974 ~ 68827650 (-)
G432377 NA non-coding downstream 259696 68806014 ~ 68806320 (-)
G432338 NA non-coding downstream 317033 68748558 ~ 68755057 (-)
G432084 NA non-coding downstream 682254 68345154 ~ 68383762 (-)
G432448 NA non-coding upstream 71421 69147630 ~ 69149826 (-)
G433669 NA non-coding upstream 392834 69469043 ~ 69469372 (-)
G433670 cep350 non-coding upstream 393555 69469764 ~ 69470321 (-)
G433680 NA non-coding upstream 408128 69484337 ~ 69484789 (-)
G432513 NA other downstream 59910 69004619 ~ 69006106 (-)
G432310 LOC106613894 other downstream 358568 68699821 ~ 68707448 (-)
bend5 LOC106584333 other downstream 713271 68331871 ~ 68352828 (-)
lrrc7 LOC106613881 other downstream 1247892 67810595 ~ 67983549 (-)
G433683 LOC106613912 other upstream 446605 69486406 ~ 69524790 (-)
G435234 NA other upstream 1914683 70990892 ~ 70991798 (-)
G435176 NA other upstream 1991816 71068025 ~ 71068887 (-)
LOC110524478 LOC106613944 other upstream 2152973 71226012 ~ 71242283 (-)
il23r LOC106613945 other upstream 2210181 71285725 ~ 71308015 (-)

Expression


Co-expression Network