soat1 (soat1)


Basic Information

Item Value
gene id soat1
gene name soat1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69187862 ~ 69198259 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604066.2
AGGCGGGGTGGTGGCGTAGAAAAAGAAGGGACATCATCGCATCACGTTTTTTCAACATTGAAGAGatgagaatgtgatgaaaatTGAAAGTAACAGATTAACACGGGGGTTTCATTTCAAGACACGGCTCAGTGAAGGGATGGAGAGTGGGGATGACAGTGTCCTGCGCTGCCGCAGCGCTTTACCTAAGATGTCCACCATTTCAAACCTGGATGATATGGGTGGAGAGGGCAGCAATGGAGAGAACCCTTGCAATGGAGAGATCCACAGTAATGGAAAAATGGAAGTGGAGCGACTCATCAGCAAGAAACTCCAACTGAAGAGGAAAGCAGAGCACTTGAAGTTTGACCTGATGAGGCAGTTTGACTCCCAGGTGTTGGAGTTCATGGACAGTCTGATAGAGGAATCGGCCAGCCTGGAGCCTGCTCCTGTCCCTGctgtcttctcccctcctctgtccGATAAAGAGAGGAGTAAGCTCAGGCATCTCCAAGGGTCATCCCAGGGCCAAGGCAAACAGTTTGTGTTCCGGAGGTCCTTGTTAGATGAGCTGTTTGAAGTGAACCACATCCGGACCATCTACCACATGTTCATTGCCCTGCTGATCCTCTTCATCCTCAGCACCCTGGTGGTTGACTTCATCGATGAAGGCAGATTGGTGCTCGACTTTGACCTGCTGGTCTATGTATTTGGACAGTTCCCCCTGGTGGTGATTACCTGGATCTGCATGTTCCTTTCAGTGCTGGTGGTGCCCTACAGCCTGTTCCACACCTGGGCCTCTCACTACCATGAGTCCCGCCATGGGACCCTGTGGTCTCTTCTACTGGGCGCTCTCTTCCTGCTCTATCAGGGCCTGGGCCTAGGCTTCCTGCCTACCTTTGTGGTGGTGAAGAACAGCTTTCCCCCTGCATCCTGCTTCATCATCATCCTGGAACAGGTGCGCTTGATGATGAAGGCACACTCCTATATCAGGGAGAATGTCCCCAAAGTTCTGGCTTTGGCAAAAGACAAATCCAgctcctccccagtctctccacTCATCCCACAGCTGAGCCACTATATCTACTTCCTCTTTGCTCCCACCCTTATTTACAGAGATAAATATCCCAGGAATCCCACCATCAGGTGGAGTTATGTGGCCTCTAAGTTATTACAGGTTCTAGGATGTCTCTTCTATGCCTACTATGTGTTTGTGCGCCTCTGCATCCCACAGTTCCGCAGCATCAGCCAGCAACTGTTTGACCTGCGGGCCATGGTCCTGTGTGTGTTCAACTCTATCCTGCCAGgagttcTGGTTCTCTTCTtggccttttttgccttcctgCACTGCTGGCTCAATGCCTTTGCTGAGATGCTGCGGTTTGCTGACAGGATGTTTTACAAGGATTGGTGGAACTCCACATcctttgccaattactaccgcaCCTGGAATGTGGTGGTACACGACTGGCTGTATTACTATGTGTACTGTGACTTCCTATGGATGTCGAAGAAGAGATTTCGGGCGGCAGGCATGTTATTGGTCTTCACTATGTCTGCAGTAGTGCATGAGTACATCTTGGCGATCTGCTTCGGCTTCTTCTacccagtcctcttctgtctcttcATGTGCTTCGGAATGATGTTTAACTTCATTCTTCATGACCGGAGAAAAGGCCCAATTTGGAACGTGATCATGTGGACTGCTCTGTTCCTCGGTCAGGGGGTCATCATCTGCCTCTACTCTCAGGAGTGGTATGCACAGCGCTACTGCCCCCTTCAGGAGccCTCTTTCCTAGAGCTGCTGAAGCCGCGTTCCTGGAGCTGTCACCTCCAGACCAACCCAGCAGTCGACTCTTGAGGGGCTGTGACTGACATCACATTGAACTACTGAACCGACAACACTCGCCAATCTATTGAATGTGTTTAGGAAGAGCACAACCTCCTGTTTCTTTCAAGCCTTTTTACTTTTTGTTTTACTTAATTTTTTTTCTGTTACACTAGTCTGACTGATATTGAGAGACTGCGTTATTCATTTGAAAGAGCATGGAGTGAGTGAGACATATAATGGCCTCTGTCATTCACAAAGATGCCTTATTTATCCTTTTAGTTTCATGACAAACCCATTGGAAATCAGGGTAACATAGAGCACAGAAATGtgaaccatatatatatatattattattttttatttataaattTTATTTCCAGCCTGGATACAATTACCATGTTCTTTCATTTGAAATGCACTTTCAATGCCAATATGGTAAATTGTAAAATTGCTGCTTTTCCCAAAAGTTAACCTCTTAGCAAACATGCAGTTATATATTTAGCAAATaatttacttttacttttttttttttttttttatgaacccagacatttcaaatgttcagCCACTGTATTTTGTGTCGTCTAGTCTCCAAGGGGTTTTAAGTCATGTTGATGGAGATCAGCGTTGGGCTCATTTCAGTTTGAAATTAACTCCCATTCAACTCATGAGTTGAAATTAGAGTTGAATTGGCTGCACTCCACGGGATGTAGAGTTTGTGTGACAGAAAGTAATCCAAGGAAATTTCACTCGTCATACAACATAAGTTTCATTGAATCTCACAGTTCCAGACACCAAATAATAACTTTTCTCTGGAAATAATGTTTATAACTTTGGTGCTTAGAATAGCCAATTATATTTTTGCCAACCATTTCATTTGTTTGGCTTGTTTTTGAAGTCCTCAGGGTCAACTGCAGGGTTACACTaatgcattctgggaaatgtATTTTCCTCATTGAACAAAATTTATTCAatttaatgaaatacaaaaactTTGAATATTCACTTACAGGTTGTTTCCCTTGATCATTCAGTTTGTCCTGAAAAATCAATTGTTTTAACAATTCTATATGCATGTATATAATGACATGTTTCATGTCCAATATGTATATTTGTATAGACCACCTAATATAGAATAGAGGCATTTGAATTTCTCTGAACTCAATTACATTTCCTTTCAGTCAAGTTTGAATTGCAATTTTGTTTTCTGTTTACTATTTAAATTCAACATTTAAATTGGAATTTGAGGCATTCTCCATTTCAATTCTGAAGTGAGCCCGACCCTTATGGAGATGTTAGCTTATTCAACAAAATGGAGATACGTTTGCTCTGTGTTTAGTGCTATGAATGTTTTGTCAGATGTGAAGCCTTACACAAAGATTCATGTTAATTAAGAATATGTATTTATTCAAAAGCAATATTGAAAGTGTTCCTATACCAATCAGAAATTCCACACCTGACCTTGAGTTGGTGGAAACTGCACTGCTGTTGCACCTGGCTGCTCTGATGTTGCCATTCATTATCAGTATGACTGAtgcatgtattgtttatttaCTTGATTAGTGCCAATGCCTAAATATACACTAGTGCATTATTTGCTTTTGGCAGAAATGACACGATTACACTAACTGTTGCCATTAATGCTGTAAATTAGGGATTCAATTTCAGCTTCAATCCATGAGTCTGACTTGTCATTTTGTGATTGTCTCTCTATGGAACAGTTTTTGTTTTAGACTCAAACCATGTATGGTGATAATTTAAACCACCAGATGGCGCTGTAATGTAACATTTTTGAATTCCCACTTGTTTCTCATGACAATCTATTTTACTCATAAGTAATTATTTAAGAAGGACCGTTAACAAAACATTGTTATatagagaaacgtgtgtgtgaatgtgtgtgtttatatatatccTATCAAGAGATTTTGTTGCAAGACTACTTCAGCCTGTATTGTAATTGGGAGACTGTTTACTATTTGTGGTCGTATTTCAGTGGTTATTTCGAGCCCACTTTTGAGATTATTATGATGCTCTTTTGATCATTTAGAAAATGAGTGATACTTTTGTTCAGATATTTCTATTTTTGAACAGAGATTGACATTCCTCTATTTTGCTTGATACATTTATGGAGTTCTAGTgtttgaaacatttatttggtaTTATACGAGATATGTTGTATAATATTTACCATTACAGTGCATTAGGTATATGTCAGGTTGAAAATAAAGCTATAAATCTATATTTTTGGTCTTTAAACCAAACCCTGGGTTAGAATTGAGACTGCAacatttttttactttaaaaTAACAGTTCCGGTTTTTGATATACTTTCCATATATAGAATATTGTGAAATGTACAATGTCAAGACAATACAAATTTGAATGGA
>XM_021604067.2
TCCTGTGTTCATATGATACCTGAGTGAGTCAACAAAATCAATGTGGTCCCCCTGGGGGTCAAGGACCCCATGGGCACAATCTGGCCATGATAACTACAAGGTTTAAATAGCTGATTAGCCTAATTTACCTAACATGGGCTAGTAGTTGATcaactggacatttctgacaggttatatactgTAGTTTACAAAGACTGTTGTTTAACATTCTGTTATCAATGTTCTCTCTCACCATTCTCCATGGTCAACATAACTTTGGTGATATTTTGCCTAAAGCTATGGAGGACAGTATCAGTGTGTCTTCTGACTGAGGTCTCTTACATGGACAGCTTGGCacagaaaataaaatgtaatttcccAAATTGCTCGAAACCCATGTAGACAGATTTAATTCACCACGCTATAGCACATGTTTACCATTATACCAGCATGGTCTCATAGATTAAACGTAATatagtaaacgtaaatccagGAAACTGACATTAGTattatatgttacatttggtaaggttacataagacagaagcttacttaaggcaaaaatgatatataacgcaaacgtctagcatcccaaaggttgcatgttcaaatctcgtcatggacaactttagcattttagtatCCTGGGGATGACAGTGCCCTGCGCTGCCGCAGCGCTTCACTATTTCAGACCTGGATGGTATGGGTGGAGAGAGCAGCAATGGAGAGAACCCTTGCAATGGAGAGATCCACAGTAATGGAAAAATGGAAGTGGAGCGACTCATCAGCAAGAAACTCCAACTGAAGAGGAAAGCAGAGCACTTGAAGTTTGACCTGATGAGGCAGTTTGACTCCCAGGTGTTGGAGTTCATGGACAGTCTGATAGAGGAATCGGCCAGCCTGGAGCCTGCTCCTGTCCCTGctgtcttctcccctcctctgtccGATAAAGAGAGGAGTAAGCTCAGGCATCTCCAAGGGTCATCCCAGGGCCAAGGCAAACAGTTTGTGTTCCGGAGGTCCTTGTTAGATGAGCTGTTTGAAGTGAACCACATCCGGACCATCTACCACATGTTCATTGCCCTGCTGATCCTCTTCATCCTCAGCACCCTGGTGGTTGACTTCATCGATGAAGGCAGATTGGTGCTCGACTTTGACCTGCTGGTCTATGTATTTGGACAGTTCCCCCTGGTGGTGATTACCTGGATCTGCATGTTCCTTTCAGTGCTGGTGGTGCCCTACAGCCTGTTCCACACCTGGGCCTCTCACTACCATGAGTCCCGCCATGGGACCCTGTGGTCTCTTCTACTGGGCGCTCTCTTCCTGCTCTATCAGGGCCTGGGCCTAGGCTTCCTGCCTACCTTTGTGGTGGTGAAGAACAGCTTTCCCCCTGCATCCTGCTTCATCATCATCCTGGAACAGGTGCGCTTGATGATGAAGGCACACTCCTATATCAGGGAGAATGTCCCCAAAGTTCTGGCTTTGGCAAAAGACAAATCCAgctcctccccagtctctccacTCATCCCACAGCTGAGCCACTATATCTACTTCCTCTTTGCTCCCACCCTTATTTACAGAGATAAATATCCCAGGAATCCCACCATCAGGTGGAGTTATGTGGCCTCTAAGTTATTACAGGTTCTAGGATGTCTCTTCTATGCCTACTATGTGTTTGTGCGCCTCTGCATCCCACAGTTCCGCAGCATCAGCCAGCAACTGTTTGACCTGCGGGCCATGGTCCTGTGTGTGTTCAACTCTATCCTGCCAGgagttcTGGTTCTCTTCTtggccttttttgccttcctgCACTGCTGGCTCAATGCCTTTGCTGAGATGCTGCGGTTTGCTGACAGGATGTTTTACAAGGATTGGTGGAACTCCACATcctttgccaattactaccgcaCCTGGAATGTGGTGGTACACGACTGGCTGTATTACTATGTGTACTGTGACTTCCTATGGATGTCGAAGAAGAGATTTCGGGCGGCAGGCATGTTATTGGTCTTCACTATGTCTGCAGTAGTGCATGAGTACATCTTGGCGATCTGCTTCGGCTTCTTCTacccagtcctcttctgtctcttcATGTGCTTCGGAATGATGTTTAACTTCATTCTTCATGACCGGAGAAAAGGCCCAATTTGGAACGTGATCATGTGGACTGCTCTGTTCCTCGGTCAGGGGGTCATCATCTGCCTCTACTCTCAGGAGTGGTATGCACAGCGCTACTGCCCCCTTCAGGAGccCTCTTTCCTAGAGCTGCTGAAGCCGCGTTCCTGGAGCTGTCACCTCCAGACCAACCCAGCAGTCGACTCTTGAGGGGCTGTGACTGACATCACATTGAACTACTGAACCGACAACACTCGCCAATCTATTGAATGTGTTTAGGAAGAGCACAACCTCCTGTTTCTTTCAAGCCTTTTTACTTTTTGTTTTACTTAATTTTTTTTCTGTTACACTAGTCTGACTGATATTGAGAGACTGCGTTATTCATTTGAAAGAGCATGGAGTGAGTGAGACATATAATGGCCTCTGTCATTCACAAAGATGCCTTATTTATCCTTTTAGTTTCATGACAAACCCATTGGAAATCAGGGTAACATAGAGCACAGAAATGtgaaccatatatatatatattattattttttatttataaattTTATTTCCAGCCTGGATACAATTACCATGTTCTTTCATTTGAAATGCACTTTCAATGCCAATATGGTAAATTGTAAAATTGCTGCTTTTCCCAAAAGTTAACCTCTTAGCAAACATGCAGTTATATATTTAGCAAATaatttacttttacttttttttttttttttttatgaacccagacatttcaaatgttcagCCACTGTATTTTGTGTCGTCTAGTCTCCAAGGGGTTTTAAGTCATGTTGATGGAGATCAGCGTTGGGCTCATTTCAGTTTGAAATTAACTCCCATTCAACTCATGAGTTGAAATTAGAGTTGAATTGGCTGCACTCCACGGGATGTAGAGTTTGTGTGACAGAAAGTAATCCAAGGAAATTTCACTCGTCATACAACATAAGTTTCATTGAATCTCACAGTTCCAGACACCAAATAATAACTTTTCTCTGGAAATAATGTTTATAACTTTGGTGCTTAGAATAGCCAATTATATTTTTGCCAACCATTTCATTTGTTTGGCTTGTTTTTGAAGTCCTCAGGGTCAACTGCAGGGTTACACTaatgcattctgggaaatgtATTTTCCTCATTGAACAAAATTTATTCAatttaatgaaatacaaaaactTTGAATATTCACTTACAGGTTGTTTCCCTTGATCATTCAGTTTGTCCTGAAAAATCAATTGTTTTAACAATTCTATATGCATGTATATAATGACATGTTTCATGTCCAATATGTATATTTGTATAGACCACCTAATATAGAATAGAGGCATTTGAATTTCTCTGAACTCAATTACATTTCCTTTCAGTCAAGTTTGAATTGCAATTTTGTTTTCTGTTTACTATTTAAATTCAACATTTAAATTGGAATTTGAGGCATTCTCCATTTCAATTCTGAAGTGAGCCCGACCCTTATGGAGATGTTAGCTTATTCAACAAAATGGAGATACGTTTGCTCTGTGTTTAGTGCTATGAATGTTTTGTCAGATGTGAAGCCTTACACAAAGATTCATGTTAATTAAGAATATGTATTTATTCAAAAGCAATATTGAAAGTGTTCCTATACCAATCAGAAATTCCACACCTGACCTTGAGTTGGTGGAAACTGCACTGCTGTTGCACCTGGCTGCTCTGATGTTGCCATTCATTATCAGTATGACTGAtgcatgtattgtttatttaCTTGATTAGTGCCAATGCCTAAATATACACTAGTGCATTATTTGCTTTTGGCAGAAATGACACGATTACACTAACTGTTGCCATTAATGCTGTAAATTAGGGATTCAATTTCAGCTTCAATCCATGAGTCTGACTTGTCATTTTGTGATTGTCTCTCTATGGAACAGTTTTTGTTTTAGACTCAAACCATGTATGGTGATAATTTAAACCACCAGATGGCGCTGTAATGTAACATTTTTGAATTCCCACTTGTTTCTCATGACAATCTATTTTACTCATAAGTAATTATTTAAGAAGGACCGTTAACAAAACATTGTTATatagagaaacgtgtgtgtgaatgtgtgtgtttatatatatccTATCAAGAGATTTTGTTGCAAGACTACTTCAGCCTGTATTGTAATTGGGAGACTGTTTACTATTTGTGGTCGTATTTCAGTGGTTATTTCGAGCCCACTTTTGAGATTATTATGATGCTCTTTTGATCATTTAGAAAATGAGTGATACTTTTGTTCAGATATTTCTATTTTTGAACAGAGATTGACATTCCTCTATTTTGCTTGATACATTTATGGAGTTCTAGTgtttgaaacatttatttggtaTTATACGAGATATGTTGTATAATATTTACCATTACAGTGCATTAGGTATATGTCAGGTTGAAAATAAAGCTATAAATCTATATTTTTGGTCTTTAAACCAAACCCTGGGTTAGAATTGAGACTGCAacatttttttactttaaaaTAACAGTTCCGGTTTTTGATATACTTTCCATATATAGAATATTGTGAAATGTACAATGTCAAGACAATACAAATTTGAATGGA

Function

symbol description
soat1 Predicted to enable cholesterol O-acyltransferase activity; cholesterol binding activity; and fatty-acyl-CoA binding activity. Predicted to be involved in cholesterol efflux; cholesterol esterification; and cholesterol metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including eye; hatching gland; pericardial region; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Chagas disease; coronary artery disease; and hepatocellular carcinoma. Orthologous to several human genes including SOAT1 (sterol O-acyltransferase 1).

NR:

description
sterol O-acyltransferase 1 isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008374 O-acyltransferase activity molecular_function

KEGG:

id description
K00637 SOAT; sterol O-acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604066.2 False 4200 mRNA 0.41 16 69187862 69196337
XM_021604067.2 True 4664 mRNA 0.40 15 69187862 69198259
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110524437 abl2 coding downstream 601 69143474 ~ 69187261 (-)
LOC110524436 LOC106613904 coding downstream 52771 69086959 ~ 69135091 (-)
LOC118964770 NA coding downstream 102597 69085182 ~ 69085265 (-)
LOC110524435 LOC106613903 coding downstream 111653 69066016 ~ 69076209 (-)
LOC110522990 LOC106613902 coding downstream 133646 69050540 ~ 69054216 (-)
si:dkey-21p1.3 LOC106613908 coding upstream 228 69198487 ~ 69228669 (-)
LOC110524442 LOC106613910 coding upstream 41272 69239531 ~ 69350551 (-)
LOC110524447 LOC106613914 coding upstream 353544 69551803 ~ 69619075 (-)
LOC110524449 LOC106613916 coding upstream 506612 69704871 ~ 69714330 (-)
LOC110524450 k0841 coding upstream 517023 69715282 ~ 69728426 (-)
G432448 NA non-coding downstream 38036 69147630 ~ 69149826 (-)
G432389 NA non-coding downstream 360212 68826974 ~ 68827650 (-)
G432377 NA non-coding downstream 381542 68806014 ~ 68806320 (-)
G433669 NA non-coding upstream 270784 69469043 ~ 69469372 (-)
G433670 cep350 non-coding upstream 271505 69469764 ~ 69470321 (-)
G433680 NA non-coding upstream 286078 69484337 ~ 69484789 (-)
G433682 NA non-coding upstream 287935 69486194 ~ 69486404 (-)
G433683 LOC106613912 non-coding upstream 288147 69486406 ~ 69524790 (-)
G432513 NA other downstream 181756 69004619 ~ 69006106 (-)
G432338 NA other downstream 432805 68748558 ~ 68755057 (-)
G432310 LOC106613894 other downstream 480414 68699821 ~ 68707448 (-)
bend5 LOC106584333 other downstream 835117 68331871 ~ 68352828 (-)
lrrc7 LOC106613881 other downstream 1369738 67810595 ~ 67983549 (-)
G435234 NA other upstream 1792633 70990892 ~ 70991798 (-)
G435176 NA other upstream 1869766 71068025 ~ 71068887 (-)
LOC110524478 LOC106613944 other upstream 2030923 71226012 ~ 71242283 (-)
il23r LOC106613945 other upstream 2088131 71285725 ~ 71308015 (-)

Expression

soat1(soat1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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soat1(soat1) Expression in each Bioproject

Bar chart with 21 bars.
soat1(soat1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network